Conformational analysis of the complex of 2-methyl-1,3,2-dioxaborinane with hydroxyl anion

Studies of the conformationsl transformations of the complex of 2-methyl-1,3,2-dioxaborinane with the hydroxyl anion performed by the quantum-chemical method HF/6-31+G(d) showed that they are more versatile than those in the initial boric ester, include the existence of six minima, five transition states, and are close to the conformational behavior of 1,3-dioxanes.     

Conformational analysis of 2-methyl-1,3,2-dioxaborinane in the presence of an ammonia molecule

Nonempirical quantum chemical methods RHF//STO-3G, 3-21G and 6-31G(d) were used for the investigation of the conformational properties of molecular complexes of 2-methyl-1,3,2-dioxaborinane with ammonia (1:1). Two types of possible associates are revealed: with donor-acceptor N→B bond and with intermolecular NH···O hydrogen bond. Their calculated relative stability and conformational behavior are determined not only by the spatial orientation of the donor and the acceptor but also by the concepts of the used calculation approach.     

Conformational analysis of 2-methyl-5-nitro-1,3,2-dioxaborinane

Quantum-chemical methods HF/6-31G(d), HF/6-31+G(d), MP2/6-31G(d)//HF/6-31G(d), and MP2/6-31+G(d)//HF/6-31+G(d) were used to investigate the conformational isomerization of 2-methyl-5-nitro-1,3,2-dioxaborinane. It has been shown that a potential energy surface of this compound includes two minima: an axial form of semi-chair and equatorial sofa together with a transition state belonging to the conformation of 2,5-twist-form. A comparison between experimental NMR ¹H and theoretical vicinal coupling constants was used to determine the quantitative conformational composition of cyclic boric acid ester and a value of ΔG ⁰ for nitro group at the ring carbon atom C⁵ in CCl₄ and C₆D₅NO₂ solutions.     

Conformational analysis of 2-methyl-1,3,2-oxaza- and 2-methyl-1,3,2-oxathiaborinane associates with water molecule

The structure and conformational behavior of 1: 1 molecular assotsiates of 2-methyl-1,3,2-oxazaand 2-methyl-1,3,2-oxathiaborinanes with water were studied ab initio in terms of HF/6-31G(d) and PBE/3z quantum-chemical approximations. The most stable complexes are formed via hydrogen bonding with the heteroatoms (oxygen and nitrogen or sulfur). Their conformational behavior implies equilibrium between sofa and half-chair conformers, and intermolecular hydrogen bond is retained in the course of ring interconversion. No associate with a dative O→B bond is formed.     

Quantum-chemical study on conformations of molecular complexes formed by 2-methyl-1,3,2-dioxaborinane with methylamine

Conformations of 1: 1 molecular complexes of 2-methyl-1,3,2-dioxaborinane with methylamine were studied in terms of restricted Hartree-Fock approximation using STO-3G, 3-21G, and 6-31G(d) bass sets. The results showed possible formation of two types of complexes, one with dative N→B bond, and the other with intermolecular hydrogen bond NH … O. Their relative stability and conformations are determined by both mutual orientation of the components and basis set used.     

Chemical ionization induced fragmentations of 2-phenyl-1,3,2-dioxaborolanes and 2-phenyl-1,3,2-dioxaborinanes

Chemical ionization induced fragmentations (with 2-methylpropane as reagent gas) of 4-methyl- and 4,5-dimethyl-2-phenyl-1,3,2-dioxaborolane and 4-methyl-2-phenyl-1,3,2-dioxaborinane gave in each case two fragments, a hydrocarbon ion and metaboric acid. Propeae and thence metaboric acid are eliminated from 4,6-dimethyl-2-phenyl-1,3,2-dioxaborinane. The mechanisms of the fragmentations are discussed. Under the conditions used 2-phenyl-1,3,2-dioxaborolane and 2-phenyl-1,3,2-dioxaborinane do not fragment.     

Stereochemistry of heterocycles

A number of previously undescribed alkyl-1,3,2-dioxaborinanes were synthesized by condensation of substituted 1,3-diols with alkylboron dichlorides or dibutyl isopropylborate. It was shown by PMR spectroscopy that the 2,5-dialkyl-1,3,2-dioxaborinane molecules are conformationally homogeneous and do not contain an axial substituent in the 5 position, whereas the 2-isopropyl-5,5-dimethyl-1,3,2-dioxaborinane molecules exist in a state of rapid ring inversion, and introduction of methyl substituents in the 4, 4, and 6 positions of the 1,3,2-dioxaborinane ring leads to distortion of the ring conformation and conformational heterogeneity of the investigated sample. The observed regularities are explained from the position of intensive oxygen-boron electron exchange in the heteroring. It is concluded that the 2,5-dialkyl-1,3,2-dioxaborinane molecules have primarily a conformation with a semiplanar form.See [1] for communication XLVIII.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 1, pp, 26–30, January, 1978     

Conformational composition of the 2,4,6-trimethyl-1,3,2-dioxaborinane stereoisomers

A study of conformational transformations of 2,4,6-trimethyl-1,3,2-dioxaborinane cis- and trans-isomers in non-empirical quantum-chemical HF/6-31G (d) and PBE/3z approximations showed that the transformation routes include the sofa conformers with different orientations of the substituents at the ring atoms C⁴ and C⁶ through the transition states corresponding to diequatorial, axial-equatorial, and dixial conformations of the 2,5-twist form. The calculation and ¹H NMR data show that the conformational equilibrium of cis-isomer is almost entirely shifted to diequatorial sofa, and the trans-form is characterized by the interconversion between the two axial-equatorial sofa conformers.     

Nonempirical approach to the conformational analysis of 2,4-dimethyl-1,3,2-dioxaborinane and its oxonium ions

Using nonempirical quantum-chemical approximations RHF//STO-3G, 3-21G, 6-31G(d) and MP2//6-31G(d,p) a conformation isomerism of 2,4-dimethyl-1,3,2-dioxaborinane and its oxonium ions was studied. It was shown that the potential energy surface of the studied molecules has minima corresponding to equatorial (main minimum) and axial sofa forms and maxima corresponding to equatorial and axial conformations of 2,5-twist forms. Calculated values of the barriers of internal rotation of methyl group at the ring C⁴ atom were found. It was also established that the heat of protonation of the cyclic boric ester was smaller than of the non-boric analog, cis-2,4-dimethyl-1,3-dioxane, owing to decrease in basicity of the oxygen atoms in the cyclic boric ester due to partial double bond character of B-O bond.     

Molecular structure and conformational preference of 2-methyl-5-nitro-5-bromo-1,3,2-dioxaborinane and its complex with pyridine

The molecular structure of 2-methyl-5-nitro-5-bromo-1,3,2-dioxaborinane and its complex with pyridine is determined by single crystal X-ray diffraction. The structure of the synthesized compounds in the solution is also confirmed by the NMR spectroscopy data, and the conformational preference of their molecules is confirmed by the calculations using hybrid density functional theory.     

Conformational analysis of 2-methyl-5-alkyl- and 5-aryl-1,3,2-dioxaborinanes

Quantum chemical study of conformational isomerization of 2-methyl-5-alkyl- and 5-aryl-1,3,2-dioxaborinanes using RHF/6-31G(d) method led to the conclusion that the equilibrium between equatorial and axial sofa conformers is shifted to the latter form. Based on the experimental and theoretically calculated vicinal coupling constants J _HH the quantitative conformational composition and the values of ΔG ⁰ for substituents at the C⁵ ring atom were established.     

Conformational analysis of stereoisomers of 2,4-dimethyl-5-isopropyl-1,3,2-dioxaborinane

The investigation of conformation conversions of cis- and trans-isomers of 2,4-dimethyl-5-isopropyl-1,3,2-dioxaborinane using ab initio quantum-chemical approximation HF/6-31G(d) and the hybrid DFT-method PBE/3z showed that the routes of the transformations presuppose an equilibrium between sofa conformers with the different orientation of substituents at the atoms C⁴ and C⁵ of the ring that convert into each other through transition states corresponding to the equatorial and axial conformations of the 2,5-twist form. Based on experimental data of ¹H NMR spectra and calculated vicinal spin-spin coupling constants the quantitative conformational composition of cis- and trans-isomers was established and also the ΔG^o value of the conformation equilibrium was determined.     

Structure and conformational analysis of 2-hydroxy-5-isobutyl-1,3,2-dioxaborinane

The structure of 2-hydroxy-5-isobutyl-1,3,2-dioxaborinane, one of the major autooxidation products of 5-isobutyl-2-isopropyl-1,3,2-dioxaborinane, has been studied by ¹H, ¹³C, and ¹¹B NMR spectroscopy together with X-ray analysis. Molecules of the title compounds adopt a sofa conformation with equatorial isobutyl substituent. The ring interconversion path, free conformational energy, and optimal conformation of the isobutyl group (corresponding to the X-ray diffraction data) were determined by DFT quantum chemical calculations at the PBE/3ξ level of theory.     

Quantum-chemical study of 1,3-dioxane complexes with two water molecules

Methods PM3, RHF/6-31G(d), and MP2/6-31G(d)//RHF/6-31G(d) were used in calculation of the energy of formation of five 1,3-dioxane complexes with two water molecules formed through hydrogen bonds. The study of the conformational properties of the most stable associate revealed two routes of the chair-chair conformation isomerization. It was shown that the difference between the minima on the potential energy surface in this gase increased, and the barriersto the interconversion decreased as compared to the calculated values for the isolated molecule of 1,3-dioxane.     

Theoretical study of the conformational energy hypersurface of cyclotrisarcosyl

The multidimensional Conformational Potential Energy Hypersurface (PEHS) of cyclotrisarcosyl was comprehensively investigated at the DFT (B3LYP/6-31G(d), B3LYP/6-31G(d,p) and B3LYP/6-311++G(d,p)), levels of theory. The equilibrium structures, their relative stability, and the Transition State (TS) structures involved in the conformational interconversion pathways were analyzed. Aug-cc-pVTZ//B3LYP/6-311++G(d,p) and MP2/6-31G(d)//B3LYP/6-311++G(d,p) single point calculations predict a symmetric cis-cis-cis crown conformation as the energetically preferred form for this compound, which is in agreement with the experimental data. The conformational interconversion between the global minimum and the twist form requires 20.88 kcal mol-1 at the MP2/6-31G(d)//B3LYP/6-311++G(d,p) level of theory. Our results allow us to form a concise idea about the internal intricacies of the PEHSs of this cyclic tripeptide, describing the conformations as well as the conformational interconversion processes in this hypersurface. In addition, a comparative analysis between the conformational behaviors of cyclotrisarcosyl with that previously reported for cyclotriglycine was carried out     

Conformations,vibrational spectra and force field of 1-methyl-2-(2′-pyridyl)benzimidazole: experimental data and density functional theory investigation in comparison with 2-(2′-pyridyl)benzimidazole

The molecular structure, conformational equilibria, vibrational spectra and molecular force field of 1-methyl-2-(2′-pyridyl)benzimidazole have been determined at the HF, MP2 and DFT/(B3LYP, BVP86) levels with 6-31+G(d,p) and TZVP basis sets. The torsional potentials for the rotation around the C1–C2 pivotal bond have been calculated at the B3LYP/6-31+G(d,p) and BVP86/TZVP levels of theory for gaseous and aqueous 1-methyl-2-(2′-pyridyl)benzimidazole. FT-Raman (3500–10 cm^?1) and FT-IR (3900–400 cm^?1) spectra of solid 1-methyl-2-(2′-pyridyl)benzimidazole have been recorded and interpreted on a base of calculated potential energy distribution. The results of the experimental and theoretical study of vibrational spectra and molecular structure of 1-methyl 2-(2′-pyridyl)benzimidazole are considered in comparison with similar data for 2-(2′-pyridyl)benzimidazole.

     

Conformational studies in the cyclohexane series. 2. Phenylcyclohexane and 1-methyl-1-phenylcyclohexane

The structures and relative energies of the conformers of phenylcyclohexane, and 1-methyl-1-phenylcyclohexane have been calculated at theoretical levels including HF/6-31G, B3LYP/6-311G, MP2/6-311G, MP2/6-311(2df,p), QCISD/6-311G, and QCISD/6-311G(2df,p). The latter gives conformational enthalpy (DeltaH degrees ), entropy (DeltaS degrees ), and free energy (DeltaG degrees ) values for phenylcyclohexane that are in excellent agreement with the experimental data. The calculations for 1-methyl-1-phenylcyclohexane find a free energy difference of 1.0 kcal/mol at -100 degrees C, favoring the conformation having an axial phenyl group, that is in only modest agreement with the experimental value of 0.32 +/- 0.04 kcal/mol. The origin of the phenyl rotational profiles for the conformers of phenylcyclohexane and 1-methyl-1-phenylcyclohexane is discussed.     

Conformational analysis of 2,4,5-trimethyl-1,3,2-dioxaborinane individual stereoisomers

The study of the conformational isomerization of cis- and trans-isomers of 2,4,5-trimethyl-1,3-dioxaborinane I by means of RHF//STO-3G, 3-21G and 6-31G(d) quantumchemical methods led to the conclusion that its route includes equilibrium between sofa conformers with a different steric orientation of substituents at the C-4 and C-5 ring atoms. These conformers are interconverted through the maxima, the conformations of equatorial and axial 2,5-twist-forms. A comparison between experimental ¹H NMR and theoretical vicinal spin-spin coupling constants was used to determine the quantitative conformational composition of stereoisomers and a value of ΔG ⁰ for conformational equilibrium.     

Conformational analysis of 2-methyl-1,3,2-dioxaborinane in the presence of a water molecule

Russian Journal of Organic Chemistry - By means of nonempirical quantum-chemical approximations RHF//STO-3G, 3-21G, and 6-31G(d) conformational characteristics were studied of molecular associate...     

Conformational analysis of 2-isopropyl-5-methyl-5-methoxymethyl-1,3,2-dioxaborinane

Study of conformational transformations of 2-isopropyl-5-methyl-5-methoxymethyl-1,3,2-dioxaborinane using DFT approximation PBE/3ζ and the second order perturbation theory method RI-MP2/λ2 revealed beside the interconversion route sofa–sofa through a transition state corresponding to 2,5-twist form a number of local minima due to internal rotation of isopropyl and methoxymethyl substituents in sofa conformers. Over 88% of the molecules of the studied compound are present in a sofa form with the equatorially oriented CH₂OCH₃ group.