Intermolecular vibrational coupling in glycine

A study of isotopomers of α-glycine by Raman, inelastic neutron scattering and i.r. methods reveals intermolecular vibrational coupling on modes which, superficially, appear vibrationally insulated.     

Peptide bond vibrational coupling

Neutral trialanine (Ala3), which is geometrically constrained to have its peptide bond at Phi and Psi angles of alpha-helix and PPII-like conformers, are studied at the B3LYP/6-31+G(d,p) level of theory to examine vibrational interactions between adjacent peptide units. Delocalization of the amide I, amide II, and amide III3 vibrations are analyzed by calculating their potential energy distributions (PED). The vibrational coupling strengths are estimated from the frequency shifts between the amide vibrations of Ala3 and the local amide bond vibrations of isotopically substituted Ala3 derivatives. Our calculations show the absence of vibrational coupling of the amide I and amide II bands in the PPII conformations. In contrast, the alpha-helical conformation shows strong coupling between the amide I vibrations due to the favorable orientation of the C=O bonds and the strong transitional dipole coupling. The amide III3 vibration shows weak coupling in both the alpha-helix and PPII conformations; this band can be treated as a local independent vibration. Our calculated results in general agree with our previous experimental UV Raman studies of a 21-residue mainly alanine-based peptide (AP).     

Selective crystallization via vibrational strong coupling

The coupling of (photo)chemical processes to optical cavity vacuum fields is an emerging method for modulating molecular and material properties. Recent reports have shown that strong coupling of the vibrational modes of solvents to cavity vacuum fields can influence the chemical reaction kinetics of dissolved solutes. This suggests that vibrational strong coupling might also effect other important solution-based processes, such as crystallization from solution. Here we test this hitherto unexplored notion, investigating pseudopolymorphism in the crystallization from water of ZIF metal–organic frameworks inside optical microcavities. We find that ZIF-8 crystals are selectively obtained from solution inside optical microcavities, where the OH stretching vibration of water is strongly coupled to cavity vacuum fields, whereas mixtures of ZIF-8 and ZIF-L are obtained otherwise. Moreover, ZIF crystallization is accelerated by solvent vibrational strong coupling. This work suggests that cavity vacuum fields might become a tool for materials synthesis, biasing molecular self-assembly and driving macroscopic material outcomes.

Strong coupling of optical cavity vacuum fields and solvent vibrations leads to selective crystallization in a pseudo-polymorphic MOF system.     

Intramolecular vibrational coupling contribution to temperature dependence of vibrational mode frequencies

High-frequency vibrational modes in molecules in solution are sensitive to temperature and shift either to lower or higher frequencies with the temperature increase. These frequency shifts are often attributed to specific interactions of the molecule and to the solvent polarization effect. We found that a substantial and often dominant contribution to sensitivity of vibrational high-frequency modes to temperature originates from anharmonic interactions with other modes in the molecule. The temperature dependencies were measured for several modes in ortho-, meta-, and para-isomers of acetylbenzonitrile in solution and in a solid matrix and compared to the theoretical predictions originated from the intramolecular vibrational coupling (IVC) evaluated using anharmonic density functional theory calculations. It is found that the IVC contribution is essential for temperature dependencies of all high-frequency vibrational modes and is dominant for many modes. As such, the IVC contribution alone permits predicting the main trend in the temperature dependencies, especially for vibrational modes with smaller transition dipoles. In addition, an Onsager reaction field theory was used to describe the solvent contribution to the temperature dependencies.     

Inelastic electron tunneling spectroscopy and vibrational coupling

We discuss the relationship between the inelastic electron tunneling spectroscopy (IETS) and vibronic coupling constant within the Green's function formalism at a level of perturbation theory approximation. We also compare our results with experimental measurements. Our results can provide insights into the mechanism of active vibronic modes for IETS.     

Chaotic dynamics and vibrational mode coupling in small argon clusters

We have computed the local Kolmogorov entropy of molecular dynamics trajectory segments near the potential energy saddles of model Ar₃ and Ar₅ clusters. In the case of Ar₃ clusters bound with a Lennard-Jones potential, the local Kolmogorov entropy of the cluster is significantly smaller in the saddle region than in other areas of the potential surface. This behavior indicates an increase in the degree of nearly quasiperiodic motion near the Ar₃ saddle due to the partial decoupling of the cluster's vibrational modes there. Lennard-Jones Ar₅ clusters do not exhibit similar behavior, but Ar₅ clusters bound with a short-range Morse potential do. This suggests that the “regularizing” effect of saddle regions is strongly dependent on the shape of the energy surface near the saddle. From these observations, we can determine which features of the saddle are most important in this respect; the flatness of the saddle region seems to be one such feature.     

Vibronic coupling in naphthalene anion: vibronic coupling density analysis for totally symmetric vibrational modes

Vibronic coupling, or electron-phonon coupling, of naphthalene is calculated. A method of vibronic coupling density analysis, which has been proposed for the vibronic coupling of the Jahn-Teller active modes in a Jahn-Teller molecule, is extended for totally symmetric vibrational modes of a molecule including a non-Jahn-Teller molecule. Contrary to non-totally-symmetric modes, orbital relaxation upon a charge transfer plays a crucial role in the vibronic coupling calculation for the totally symmetric modes. The method is applied for the ground state of the naphthalene anion to compare with that of the benzene anion. The relationship between the vibronic coupling density and a nuclear Fukui function is also discussed.     

Low-temperature vibrational spectra of some nitrosyl salts

Pronounced changes in the vibrational spectra of NO[SbCl₆], (NO)₂[SnCl₆] and (NO)₂[TiCl₆] upon cooling to liquid nitrogen temperature are interpreted in terms of phase changes to low-symmetry structures with centrosymmetric space groups and z = 2 or 4. Restriction of rotation of NO⁺ results in appearance of Raman and IR bands at ca. 235 cm⁻¹ due to NO⁺ libration and series of translatory lattice modes.     

Superfast thermal decomposition reactions of polymers and crystallohydrates

Evidence of the existence of a high-limit degradation temperature for polymers is reported. At this high-limit temperature, the rate of polymer thermolysis exceeds the reaction rate predicted by the Arrhenius law by many orders of magnitude. An explanation is proposed for the observed behaviour, based on the disappearance of intermolecular interactions. For the study of degradation reactions under high-limit temperature conditions, new methods of fast (pulsed) thermal analysis are presented. The investigated samples, as very thin films, are brought into tight contact with a hot moving metal surface. Under these conditions, the heating rate exceeds 10⁴ deg/s, allowing estimation of accompanying decomposition rates for heating times of the order of 0.01 s.     

The vibrational spectra of some metal hyponitrates

The Raman spectrum of Na₂N₂O₃ and the i.r. spectra of Na₂N₂O₃, CaN₂O₃, BaN₂O₃, CdN₂O₃ and PbN₂O₃ are reported and assigned.     

The vibrational analysis of some oxamide complexes

Summary The vibrational spectra of the oxamide and deuteriooxamide complexes with Ni^II, Pd^II, Cu^II, Zn^II and Co^III are presented. The vibrational analysis is given for a planarD _2h structure for the Ni^II, Cu^II and Pd^II compounds; the Zn^II and Co^III complexes have a tetrahedral and octahedral structure respectively.Presented in part at the XIX I.C.C.C. Prague 1978.     

The vibrational analysis of some potassium salts

The IR, far-IR and Raman spectra of products with general formula X—COOK (X = —CONH₂, —CONHCH₃ and —CSNH₂) and the N-deuterated derivatives have been recorded, the fundamental vibrational frequencies assigned, and a valence force field calculated.     

Electronic and vibrational spectra of some dihydroxypyrimidines

In the present paper, we report the analysis and assignment of the electronic absorption spectra of 4(6) methyl-, 5,6-dimethyl- and 5-bromouracil in the light of their ketonic structure and the electronic and vibrational spectra of 4,6-dihydroxypyrimidine in the light of its keto enolic structure.     

beta Sheet structure in amyloid beta fibrils and vibrational dipolar coupling

Fibrils formed by amyloid beta proteins were labeled with 13C at various positions and examined by infrared spectroscopy to detect vibrational dipolar coupling, implying close physical proximity. The results support key features of several recently proposed models for amyloid fibril structure, but they also add some important caveats. For instance, they support the conclusion that the beta structure is parallel; however, the coupling is not as strong as expected when residues are in register. This may be explained by out-of-register alignment of adjacent strands, or nonstandard parallel sheet structure that yields suboptimal alignment of labeled dipole moments. The data also point to a significant structural difference between fibrils formed by the 40-residue amyloid beta protein and fibrils formed by residues 10-35.     

Polarization dependence of vibrational coupling signals in femtosecond stimulated Raman spectroscopy

The polarization dependence of vibrational coupling signals seen in femtosecond stimulated Raman spectroscopy (FSRS) is investigated. Changing the polarization of a pulse used to impulsively excite coherent low frequency chlorine bending motion in CDCl(3) has a dramatic effect on the line shape of vibrational sidebands which arise from the anharmonic coupling of the pumped modes at 262 and 365 cm(-1) with the higher frequency symmetric stretching mode at 652 cm(-1). The asymmetric bend sideband (652+262 cm(-1)) changes sign and magnitude as the impulsive pulse polarization is rotated relative to the Raman pulses, while the symmetric bend sideband (652+365 cm(-1)) is relatively polarization independent. These experiments demonstrate the ability of FSRS to obtain time-resolved information on not only the vibrational coupling strength but also the symmetry of anharmonically coupled modes.     

Tuning intramolecular anharmonic vibrational coupling in 4-nitroaniline by solvent-solute interaction

Applying a combined experimental and theoretical approach we demonstrate that doublets of the nu(s)(NO(2)) band of 4-nitroaniline which have been observed in several environments originate from Fermi resonances. Changes of the line shapes typical for Fermi resonances are reported also for other isotopomers of 4-nitroaniline, however, for each of them in different solvents and solvent mixtures. Simulations of the infrared spectra based on the solvatochromic frequency shifts of the nu(s)(NO(2)) vibration determined experimentally together with calculated cubic couplings with overtones and combination bands account for the experimental findings.     

Zero-point vibrational corrections to isotropic hyperfine coupling constants in polyatomic molecules

The present work addresses isotropic hyperfine coupling constants in polyatomic systems with a particular emphasis on a largely neglected, but a posteriori significant, effect, namely zero-point vibrational corrections. Using the density functional restricted-unrestricted approach, the zero-point vibrational corrections are evaluated for the allyl radical and four of its derivatives. In addition for establishing the numerical size of the zero-point vibrational corrections to the isotropic hyperfine coupling constants, we present simple guidelines useful for identifying hydrogens for which such corrections are significant. Based on our findings, we critically re-examine the computational procedures used for the determination of hyperfine coupling constants in general as well as the practice of using experimental hyperfine coupling constants as reference data when benchmarking and optimizing exchange-correlation functionals and basis sets for such calculations.     

Low frequency vibrational spectra of some amino acids

Far-IR absorption and reflection spectra, as well as laser Mandelshtam–Brillouin and Raman scattering spectra of -glycine, β-alanine, -histidine, -tryptophane single crystals in the 0.2–400 cm⁻¹ range were investigated. It was revealed that the far-IR and Raman spectra of the amino acids under study contain more bands than predicted by factor-group analysis, thus indicating a possible contribution of low-energy intramolecular vibrations and overtones, as well as an emergence of forbidden vibrations. Some of the low-frequency bands have never, to our knowledge, been detected previously.     

Synthesis and vibrational study of some polydentate ligands

Sodium salts of iminodiacetic acid (IDA), ethylenediaminetetraacetic acid (EDTA), 1,2-propylenediaminetetraacetic acid (PDTA) and 1,2-diaminocyclohexanetetraacetic acid (DCTA) were prepared by modification of the literature methods and their i.r. and Raman spectra were studied. The results obtained by application of both techniques allowed a better characterization of these polydentate ligands. Raman spectroscopy was specially useful in elucidating structural aspects in compounds containing acetate groups.