Axial and equatorial hydrogen bonds: jet-cooled rotational spectrum of the pentamethylene sulfide...hydrogen fluoride complex

Two different axial and equatorial hydrogen-bonded conformers of the complex formed by pentamethylene sulfide and hydrogen fluoride have been generated in a pulsed supersonic expansion and characterised by means of Fourier transform microwave spectroscopy. The ground-state rotational spectra of six isotopomers (C(5)H(10)S...HF, C(5)H(10)S ...DF, C(5)H(10)(34)S ...HF, (13)C(alpha)C(4)H(10)S ...HF, (13)C(beta)C(4)H(10)S...HF and (13)C(gamma)C(4)H(10)S ...HF) have been analysed for both conformers in the frequency range 5.5-18.5 GHz. The rotational parameters were used to derive C(s) structures for the conformers, with hydrogen fluoride pointing to the domain of the nonbonding electron pairs at either the axial or equatorial position of the sulfur atom. The axial form was found to be the more stable, in contrast with the observation for the pentamethylene sulfide...HCl complex. No equatorial-to-axial relaxation was observed when He or Ar were used as the carrier gas. The conformational behaviour is compared with that of related six-membered rings and discussed in terms of the existence of secondary hydrogen bonding between the halogen atom and the nearest H atoms of the methylene groups of the ring. No significant structural distortion of pentamethylene sulfide upon complexation was detected from a comparison with the structure of the isolated monomer. Finally, an ab initio study was carried out to complement the experimental results.     

Symmetric hydrogen bonding. Infrared absorption spectrum of potassium hydrogen succinate single crystal

Polarized spectra of the title compound were recorded and the assignment of the most relevant bands is discussed. Particular attention is paid to the B_u type band at 1680 cm^?1 which is not accounted for in the factor group analysis.     

Rotational spectrum and hydrogen bonding of the H2O-HO radical complex

The first spectroscopic identification of the H2O-HO radical complex in the gas phase has been conducted by utilizing pulsed-discharge nozzle Fourier transform microwave spectroscopy. R-branch transitions in the Ka = 0 manifold appeared as in Hund's case (b), but extraordinarily large spin doubling implies a strong spin-orbit coupling between the electronic ground and low-lying excited states that correlate to the degenerate 2Pi state in free OH. The geometry of the complex is of C2v symmetry as a zero-point vibrational average, in which the OH radical acts as a proton donor to water. Precisely determined hyperfine coupling constants associated with hydrogen nuclei indicate a substantial rearrangement in unpaired electron distribution: there exists small but nonzero spin density on the H atoms in water.     

Experimental and theoretical analysis of the rotational Raman spectrum of hydrogen molecules in clathrate hydrates

The Raman spectra of H(2) and HD molecules in simple hydrogen and binary hydrogen-tetrahydrofuran clathrate hydrates have been measured at temperatures as low as 20 K. The rotational bands of trapped molecules in simple and binary hydrates have been analyzed, and the contributions originating from hydrogen molecules in the large cages have been separated from those in the small cages. A theoretical model, consisting in rigid cages enclosing interacting hydrogen molecules, has been exploited to calculate, on the basis of quantum mechanics, the Raman intensity of the rotational transitions for up to two interacting molecules in one cage. A comparison with experiment leads to a clear interpretation of sidebands appearing in the Raman rotational lines. The quantitative agreement between theory and experiment obtained in some cases clarifies the importance of the choice of the interaction potential, and of the proton disorder in the clathrate crystal.     

Microwave spectrum of 3-butyne-1-thiol: evidence for intramolecular S-H...pi hydrogen bonding

The microwave spectrum of 3-butyne-1-thiol has been studied by means of Stark-modulation microwave spectroscopy and quantum-chemical calculations employing the B3LYP/6-311++G(3df,2pd), MP2/aug-cc-pVTZ, MP2/6-311++G(3df,2pd), and G3 methods. Rotational transitions attributable to two conformers of this molecule were assigned. One of these conformers possesses an antiperiplanar arrangement of the atoms S-C1-C2-C3, while the other is synclinal and stabilized by the formation of an intramolecular hydrogen bond between the H-atom of the thiol group and the pi-electrons of the C[triple bond]C triple bond. The energy difference between these conformers was estimated to be 1.7(4) kJ mol(-1) by relative intensity measurements, with the hydrogen-bonded conformer being lower in energy. The spectra of five vibrationally excited states of the synclinal conformer were observed, and an assignment of these states to particular vibrational modes was made with the aid of a density functional theory (DFT) calculation of the vibrational frequencies at the B3LYP/6-311++G(3df,2pd) level of theory.     

The rotational spectrum of CN-

The rotational spectrum of the molecular negative ion CN(-) has been detected in the laboratory at high resolution. The four lowest transitions were observed in a low pressure glow discharge through C(2)N(2) and N(2). Conclusive evidence for the identification was provided by well-resolved nitrogen quadrupole hyperfine structure in the lowest rotational transition, and a measurable Doppler shift owing to ion drift in the positive column of the discharge. Three spectroscopic constants (B, D, and eQq) reproduce the observed spectrum to within one part in 10(7) or better, allowing the entire rotational spectrum to be calculated well into the far IR to within 1 km s(-1) in equivalent radial velocity. CN(-) is an excellent candidate for astronomical detection, because the CN radical is observed in many galactic molecular sources, the electron binding energy of CN(-) is large, and calculations indicate CN(-) should be detectable in IRC+10216-the carbon star where C(6)H(-) has recently been observed. The fairly high concentration of CN(-) in the discharge implies that other molecular anions containing the nitrile group may be within reach.     

The rotational spectrum of the cyclopentadienylallylnickel complex

The rotational spectrum of cyclopentadienylallylnickel, C₃H₅NiC₅H₅, has been studied using a pulsed molecular beam Fourier transform microwave spectrometer. Twelve a-type transitions were analyzed to obtain rotational and centrifugal distortion constants for the parent C₃H₅⁵⁸NiC₅H₅ complex. The measured rotational constant A = 3107.603(93) MHz is about 160.0 MHz larger than the predicted DFT value, providing evidence for possible fluxional motion in the complex. The large distortion constants, on the order of 100 kHz, provide further evidence for fluxional motion. The experimental constants B = 1302.38(22) and C = 1276.40(15) MHz are in good agreement with the DFT calculated values and confirm the η³-bonding of the allyl ligand to the Ni–C₅H₅ moiety. DFT calculations provide a V₅ barrier for internal rotation about the Ni–C₅H₅ axis of 53 cm⁻¹, with the lowest energy conformation having the central allyl c-atom eclipsed with respect to two C₅H₅ carbon atoms. Several additional rotational lines, possibly those of an exited torsional state, were observed but not assigned.     

The rotational spectrum and molecular properties of a hydrogen-bonded dimer of phosphine and hydrogen fluoride

⁵⁷Fe Mössbauer spectra have been obtained for Fe(p-CH₃C₆H₄SO₃)₂ between 2.3 and 300 K in zero field, and at 2.3 and 4.2 K in longitudinal applied magnetic fields ranging from 1.1 to 5.6 T. The complex is a fast-relaxing paramagnet under all conditions studied and there is no evidence of antiferromagnetic exchange coupling. The FeO₆ chromophore is distorted by a trigonal elongation and the orbital ground state is the [($\text{2}\text{3}$)^{$\text{1}\text{2}$}|±2〉 ? ($\text{1}\text{3}$)^{$\text{1}\text{2}$}|?1〉] doublet. The temperature dependence of the quadrupole splitting has been analysed via a crystal-field model to provide estimates of the axial field splitting parameter Ds = -93 cm^-1, spin-orbit coupling constant λ = -70 cm^-1, and fine structure constant Dσ = -28 cm^-1. The magnetic properties of the complex are described by treating the ground state as a non-Kramers doublet with fictitious spin ? = $\text{1}\text{2}$. Five separate Mössbauer-Zeeman spectra can be fitted in this spin-hamiltonian approximation with identical values of the g- and A-tensor components, viz. g_⊥ = 1.0, g_u = 9.0; A_⊥ ≈ 2.0 mm s^-1. A_u = -1.79 mm s^-1. The trigonal z axis, the z axis of the electric field gradient tensor, and the easy axis of magnetisation are collinear, and the saturation value of the internal hyperfine field along this axis is +13.0 T.     

Ab initio HF-SCF study of naphthazarin: Geometries,isomerism, hydrogen bonding,and vibrational spectrum

The structural properties and intramolecular hydrogen bonding of a series of structures of naphthazarin molecule were investigated by ab initio HF-SCF methods. The geometries of theC _2v ,C _2h ,D _2h , andC _s symmetry structures were optimized using split-valence basis sets. MP2/6-31G^*// HF/6-31G single-point energy calculations indicate that theC _2v isomer (5,8-dihydroxy-1,4-naphthoquinone) is the lowest energy structure of the molecule and that theC _2h symmetry one (4,8-dihydroxy-1,5-naphthoquinone), lying 37 kJ/mol above theC _2v form, is the other stable isomer of naphthazarin. At the HF/6-31G level, the intramolecular proton exchange between two equivalentC _2v structures is a two-step process where each proton can be independently transferred through an unsymmetrical potential having a 1,5-quinone intermediate, theC _2h symmetry structure, and two equivalent transition states ofC _s symmetry, with a barrier height equal to 38 kJ/ mol (MP2/6-31G^*//HF/6-31G). The study of naphthazarin molecule is flanked by a theoretical investigation on theC _2v andC _2h isomers of the parent naphthoquinone and dihydroxynaphthalene molecules. The SCF vibrational spectrum of the ground state of naphthazarin, harmonic frequencies, and infrared and Raman band intensities were computed at the HF/6-31G level. The results of the calculations are compared with the matrix isolation FT-IR spectroscopy measurements and with the infrared and Raman spectra of the crystal molecule.     

On differences between hydrogen bonding and improper blue-shifting hydrogen bonding.

Twenty two hydrogen-bonded and improper blue-shifting hydrogen-bonded complexes were studied by means of the HF, MP2 and B3LYP methods using the 6-31G(d,p) and 6--311 ++G(d,p) basis sets. In contrast to the standard H bonding, the origin of the improper blue-shifting H bonding is still not fully understood. Contrary to a frequently presented idea, the electric field of the proton acceptor cannot solely explain the different behavior of the H-bonded and improper blue-shifting H-bonded complexes. Compression of the hydrogen bond due to different attractive forces-dispersion or electrostatics--makes an important contribution as well. The symmetry-adapted perturbation theory (SAPT) has been utilized to decompose the total interaction energy into physically meaningful contributions. In the red-shifting complexes, the induction energy is mostly larger than the dispersion energy while, in the case of blue-shifting complexes, the situation is opposite. Dispersion as an attractive force increases the blue shift in the blue-shifting complexes as it compresses the H bond and, therefore, it increases the Pauli repulsion. On the other hand, dispersion in the red-shifting complexes increases their red shift.     

Vibrational and NMR spectra of mono- and di-chlorothiolacetic acids in relation to rotational isomerism and hydrogen bonding

The vibrational spectra of mono- and di-chlorothiolacetic acids have been measured in liquid and gaseous states and solutions, and vibrational assignments have been proposed. The experimental material shows that these molecules are present as a mixture of two rotational isomers. The energy of the two isomers in the liquid state is almost the same.     

Preorganization-enhanced halogen bonding via intramolecular hydrogen bonding: a theoretical study

Structural Chemistry - Cationic and neutral halogen bonding (XB) donors use two types (I and II) of intramolecular hydrogen bonding (HB) to preorganize structures and increase the efficiency of...     

The rotational spectrum of propynyl isocyanide

Propynyl isocyanide, CH₃C₂NC, has been prepared by vacuum pyrolysis of pentacarbonyl-(1,2-dichloropropenyl isocyanide) chromium, (CO)₅Cr–CN–C(Cl)=C(Cl)CH₃, and its ground state millimeter and microwave spectrum has been observed for the first time. r_s structural parameters of this molecule with a C_3v symmetry could be obtained from the rotational constants of several isotopomers: r_(C1–C2)=1.456(2) Å, r_(C2–C3)=1.206(2) Å, r_(C3–N)= 1.316(2) Å, r_(N–C4)= 1.175(2) Å, r_(H–C1)= 1.090(1) Å, >HCC=110.7(4)°. The nitrogen quadrupole coupling constant has been determined to be 878(2) kHz and measurements of the Stark effect allowed to obtain an electric dipole moment of 4.19(3) Debye. The results fit well into a series of related compounds and are in good agreement with data from ab initio calculations.     

Jet-cooled rotational spectrum of laser-ablated phenylalanine

The rotational spectrum of neutral phenylalanine has been recorded for the first time using laser-ablation molecular-beam Fourier transform microwave spectroscopy (LA-MB-FTMW). Two conformers stabilized by conjugative O-H···N and N-H···π hydrogen bond interactions have been conclusively identified on the basis of experimental values of rotational and (14)N nuclear quadrupole coupling constants. The nonobservation of the rotational spectra of the other low-energy conformers has been attributed to the photofragmentation that takes place in the laser ablation process. Nuclear quadrupole coupling interactions have been used directly to determine the orientation of the amino group and to identify and experimentally characterize the N-H···π interactions.     

The far-infrared rotational spectrum of the CF radical

The rotational spectrum of CF in its ground electronic state was studied around 1000 GHz, using a tunable far-infrared source. Seven transitions were observed originating from the ²Π_1/2 and ²Π_3/2 substates. The hyperfine and Λ-type splittings were resolved. The results were combined with gas-phase electron resonance and infrared diode laser spectra to determine all pertinent molecular constants.     

Experimentally measured permanent dipoles induced by hydrogen bonding. The Stark spectrum of indole-NH3

Hydrogen bond pairs involving the chromophore indole have been extensively studied in the gas phase. Here, we report high resolution electronic spectroscopy experiments on the indole-NH(3) hydrogen bond pair in the absence and presence of an electric field. The S(1)-S(0) origin band of this complex recorded in zero field at high resolution reveals two overlapping spectra; a consequence of NH(3) hindered internal rotation. The barrier to internal rotation is predicted by theory to be less than 20 cm(-1) in the ground state, therefore requiring a non-rigid rotor Hamiltonian to interpret the spectra. Conducting the experiment in the presence of an applied electric field further perturbs the already congested spectrum of the complex, but makes possible the measurement of the permanent electric dipole moments in its S(0) and S(1) states. These values reveal significant changes in electron distribution that arise from hydrogen bonding effects.     

The rotational spectrum of bromoacetyl chloride

The rotational spectrum of bromoacetyl chloride, BrCH₂COCl, has been assigned using a pulsed molecular beam Fourier transform microwave spectrometer. It has been possible to determine the rotational and quartic centrifugal distortion constants of the energetically favoured conformer (anti-periplanar) as well as the complete bromine and chlorine quadrupole coupling tensors including their off diagonal elements for the following isotopomers: ⁷⁹BrCH₂CO³⁵Cl, ⁸¹BrCH₂CO³⁵Cl, ⁷⁹BrCH₂CO³⁷Cl, and ⁸¹BrCH₂CO³⁷Cl. Experimental results are supported by quantum chemical calculations.     

Sizing the Ubbelohde effect: the rotational spectrum of a tert-butylalcohol dimer

The H → D isotopic substitution of the hydroxylic hydrogen participating in the O-H···O hydrogen bond in the tert-butylalcohol dimer produces an increase of the B and C rotational constants, according to the shrinkage of the OO distance of about 7 m?, underlying and sizing the associated Ubbelohde effect.