Mediation of ultrafast light-harvesting by a central dimer in phycoerythrin 545 studied by transient absorption and global analysis

We report ultrafast femtosecond transient absorption measurements of energy-transfer dynamics for the antenna protein phycoerythrin 545, PE545, isolated from a unicellular cryptophyte Rhodomonas CS24. The phycoerythrobilins are excited at both 485 and 530 nm, and the spectral response is probed between 400 and 700 nm. Room-temperature measurements are contrasted with measurements at 77 K. An evolution-associated difference spectra (EADS) analysis is combined with estimations of bilin spectral positions and energy-transfer rates to obtain a detailed kinetic model for PE545. It is found that sub pulse-width dynamics include relaxation between the exciton states of a chromophore dimer (beta 50/60) located in the core of the protein. Energy transfer from the lowest exciton state of the phycoerythrobilin (PEB) dimer to one of the periphery 15,16-dihydrobiliverdin (DBV) bilins is found to occur on a time scale of 250 fs at room temperature and 960 fs at 77 K. A host of energy-transfer dynamics involving the beta 158, beta 82, and alpha 19 bilins occur on a time scale of 2 ps at room temperature and 3 ps at 77 K. A final energy transfer occurs between the red-most DBV bilins with a time scale estimated to be approximately 30 ps. The role of the centrally located phycoerythrobilin dimer is seen as crucial-spectrally as it expands the cross-section of absorption of the protein; structurally as it sits in the middle of the protein acting as an intermediary trap; and kinetically, as the internal conversion and subsequent red-shift of the excitation is extremely fast.     

High T(g) photorefractive polymers: influence of the chromophores' beta tensor

In this paper we study the effect of the chromophores' beta tensor active components on the diffraction efficiency of a high T(g) photorefractive polymer. In particular, we study the two simplest structures with nonvanishing dipole moment, the one-dimension push-pull systems, and the Lambda-shaped chromophores. We have developed a model that relate the diffraction efficiency expression with experimental conditions and microscopic properties of the molecules used. Using this model we determine the optimum experimental conditions for both kinds of chromophores and the criteria for the design of chromophores with improved microscopic properties. The model was also used to evaluate the diffraction efficiency of the chromophore Disperse Red 1 (DR1) with a good agreement with experimental data present in bibliography, and of other chromophores selected with the criteria derived from the model, using quantum mechanical calculations to obtain the microscopic properties. Using the designed chromophores diffraction efficiencies more than one order of magnitude higher than that calculated for DR1 with the experimental conditions has been obtained in simulations. These chromophores also exhibit a low dependency of eta on the electric field polarization in contrast to the DR1 or the low T(g) photoreactive materials.     

An opsin shift in rhodopsin: retinal S0-S1 excitation in protein, in solution, and in the gas phase

We considered a series of model systems for treating the photoabsorption of the 11-cis retinal chromophore in the protonated Schiff-base form in vacuum, solutions, and the protein environment. A high computational level, including the quantum mechanical-molecular mechanical (QM/MM) approach for solution and protein was utilized in simulations. The S0-S1 excitation energies in quantum subsystems were evaluated by means of an augmented version of the multiconfigurational quasidegenerate perturbation theory (aug-MCQDPT2) with the ground-state geometry parameters optimized in the density functional theory PBE0/cc-pVDZ approximation. The computed positions of absorption bands lambdamax, 599(g), 448(s), and 515(p) nm for the gas phase, solution, and protein, respectively, are in excellent agreement with the corresponding experimental data, 610(g), 445(s), and 500(p) nm. Such consistency provides a support for the formulated qualitative conclusions on the role of the chromophore geometry, environmental electrostatic field, and the counterion in different media. An essentially nonplanar geometry conformation of the chromophore group in the region of the C14-C15 bond was obtained for the protein, in particular, owing to the presence of the neighboring charged amino acid residue Glu181. Nonplanarity of the C14-C15 bond region along with the influence of the negatively charged counterions Glu181 and Glu113 are found to be important to reproduce the spectroscopic features of retinal chromophore inside the Rh cavity. Furthermore, the protein field is responsible for the largest bond-order decrease at the C11-C12 double bond upon excitation, which may be the reason for the 11-cis photoisomerization specificity.     

Solvent effects on the resonance Raman and hyper-Raman spectra and first hyperpolarizability of N,N-dipropyl-p-nitroaniline

Linear absorption spectra, resonance Raman spectra and excitation profiles, and two-photon-resonant hyper-Rayleigh and hyper-Raman scattering hyperpolarizability profiles are reported for the push-pull chromophore N,N-dipropyl-p-nitroaniline in seven solvents spanning a wide range of polarities. The absorption spectral maximum red shifts by about 2700 cm(-1), and the symmetric -NO2 stretch shifts to lower frequencies by about 11 cm(-1) from hexane to acetonitrile, indicative of significant solvent effects on both the ground and excited electronic states. The intensity patterns in the resonance Raman and hyper-Raman spectra are similar and show only a small solvent dependence except in acetonitrile, where both the Raman and hyper-Raman intensities are considerably reduced. Quantitative modeling of all four spectroscopic observables in all seven solvents reveals that the origin of this effect is an increased solvent-induced homogeneous broadening in acetonitrile. The linear absorption oscillator strength is nearly solvent-independent, and the peak resonant hyperpolarizability, beta(-2omega;omega,omega), varies by only about 15% across the wide range of solvents examined. These results suggest that the resonant two-photon absorption cross sections in this chromophore should exhibit only a weak solvent dependence.     

Evaluation of alternative sum-over-states expressions for the first hyperpolarizability of push-pull pi-conjugated systems

A dipolar-free sum-over-states expression for the diagonal components of the first hyperpolarizability (beta) tensor has been proposed by Kuzyk [Phys. Rev. A 72, 053819 (2005)] as an alternative to the traditional expression. We examine both alternatives for the longitudinal beta of four typical push-pull pi-conjugated systems using the ab initio CIS and CIS(D) schemes to approximate the excited state properties. Since they are each evaluated approximately the two SOS expressions yield different values for beta and it is found that (i) they evolve symmetrically as the number of excited states is increased so that their average is nearly constant; (ii) in the static limit, the two values agree better with one another when their average is close to the "exact" correlated result; and (iii) frequency dispersion can affect the agreement between the alternative expressions. On the basis of (i) and (ii) it appears best for typical push-pull pi-conjugated systems to estimate the static beta, and the error in the value so obtained, by averaging the Kuzyk and traditional results.     

Localized emitting state and energy transfer properties of quadrupolar chromophores and (multi)branched derivatives

In order to better understand the nature of intramolecular charge and energy transfer in multibranched molecules, we have synthesized and studied the photophysical properties of a monomer quadrupolar chromophore with donor-acceptor-donor (D-A-D) electronic push-pull structure, together with its V-shaped dimer and star-shaped trimers. The comparison of steady-state absorption spectra and fluorescence excitation anisotropy spectra of these chromophores show evidence of weak interaction (such as charge and energy transfer) among the branches. Moreover, similar fluorescence and solvation behavior of monomer and branched chromophores (dimer and trimer) implies that the interaction among the branches is not strong enough to make a significant distinction between these molecules, due to the weak interaction and intrinsic structural disorder in branched molecules. Furthermore, the interaction between the branches can be enhanced by inserting π bridge spacers (-C═C- or -C≡C-) between the core donor and the acceptor. This improvement leads to a remarkable enhancement of two-photon cross-sections, indicating that the interbranch interaction results in the amplification of transition dipole moments between ground states and excited states. The interpretations of the observed photophysical properties are further supported by theoretical investigation, which reveal that the changes of the transition dipole moments of the branched quadrupolar chromophores play a critical role in observed the two-photon absorption (2PA) cross-section for an intramolecular charge transfer (ICT) state interaction in the multibranched quadrupolar chromophores.     

Synthesis and evaluation of the bis-nor-anachelin chromophore as potential cyanobacterial ligand

The cyanobacterial metabolite anachelin, postulated to serve as a biological ligand to Fe (siderophore), is composed of a fascinating blend of polyketide, peptide, and alkaloid building blocks. In particular, the latter consists of a N,N-dimethyltetrahydroquinolinium fragment, of which the biosynthesis is unknown. To investigate the role of this permanently positively charged fragment, we developed a synthesis of both the anachelin chromophore and its bis-nor derivative lacking the N,N-dimethyl groups starting from suitably protected nitro-DOPA in six and five steps, respectively, and in 50-64% overall yield. Both compounds were then compared for their chemical behavior toward oxidation. It was found that the bis-nor-anachelin chromophore is readily oxidized in solution in the presence of air, with a clear dependence of the rate of oxidation on the pH value. In addition, we could demonstrate that the enzyme tyrosinase, postulated to serve as key catechol oxidase in the biosynthesis of anachelin, also oxidized the bis-nor-hydroquinonamine derivative. Last, Fe(III) was shown to be an effective oxidant for the bis-nor-anachelin chromophore, resulting in all cases in the corresponding aminoquinone. In stark contrast, the anachelin chromophore resisted oxidation under various conditions surveyed (i.e., mediated by air, by tyrosinase, and by Fe(III)). In particular, Fe(III) was readily complexed by the anachelin chromophore, and the resulting complexes were characterized. In conclusion, these experiments demonstrate that the bis-nor-anachelin chromophore is unlikely to serve as cyanobacterial ligand, due to its instability toward oxidation. Moreover, the permanent quaternary ammonium group in anachelin renders the alkaloid chromophore much more stable against oxidation and thus results in its use as ligand for Fe(III).     

Stochastic Liouville equations for coherent multidimensional spectroscopy of excitons

Signatures of chemical exchange and spectral diffusion in 2D photon-echo line shapes of molecular aggregates are studied using model calculations for a dimer whose Hamiltonian parameters are stochastically modulated. Cross peaks induced by chemical exchange and by exciton transport have different dynamics and distinguish two models which have the same absorption spectrum (a two-state jump bath modulation model of a dimer and a four-state jump bath model of a single chromophore). Slow Gaussian-Markovian spectral diffusion of a symmetric dimer induces new peaks which are damped as the dipole moment is equilibrated. These effects require an explicit treatment of the bath and may not be described by lower-level theories such as the Redfield equations, which eliminate the bath.     

Symmetric and unsymmetric "dumbbells" of Ru2-alkynyl units via C-C bond formation reactions

Oxidative homocoupling (Glaser) reaction of Ru2 compounds bearing peripheral ethyne resulted in symmetric dimers. Cross-coupling (Sonogashira) reaction between Ru2 compounds bearing peripheral iodo and ethyne groups yielded an unsymmetric dimer. Voltammetric data indicated that Ru2 units in the symmetric dimers are noninteracting, and the unsymmetric dimer is best described as a weakly coupled push-pull compound.     

What is Best Strategy for Water Soluble Fluorescence Dyes?—A Case Study Using Long Fluorescence Lifetime DAOTA Dyes**

The lipophilic nature of organic dyes complicates their effectiveness in aqueous solutions. In this work we investigate three different strategies for achieving water-solubility of the diazaoxatriangulenium (DAOTA⁺) chromophore: hydrophilic counter ions, aromatic sulfonation of the chromophore, and attachment of charged side chains. The long fluorescence lifetime (FLT, τ_f=20 ns) of DAOTA⁺ makes it a sensitive probe to analyze solvation and aggregation effects. Direct sulfonation of the chromophore was found to increase solubility drastically, but at the cost of greatly reduced quantum yields (QYs) due to enhanced non-radiative deactivation processes. The introduction of either cationic (4) or zwitterionic side chains (5), however, brings the FLT (τ_f=18 ns) and QY (ϕ_f=0.56) of the dye to the same level as the parent chromophore in acetonitrile. Time-resolved fluorescence spectroscopy also reveals a high resistance to aggregation and non-specific binding in a high loading of bovine serum albumin (BSA). The results clearly show that addition of charged flexible side chains is preferable to direct sulfonation of the chromophore core.     

Pyrrole-cored push-pull single chromophore

We report a straightforward synthesis toward pyrrole-cored push-pull single chromophore in which the electron-donating (D) units are pyrrole groups and electron-withdrawing (A) moieties are diketone groups. Optical and electrochemical properties of the novel pyrrole-based building block embedding carbonyl functionalities were studied in detail. On the redox behaviors, this resulting material not only possesses low-lying LUMO but also displays high-lying HOMO with fully reversible p-and n-doping, which can establish it as a good candidate for use as electron/hole-transporting material in optical and electro-optical applications.     

Stabilities of multiply charged dimers and clusters of fullerenes

The authors find even-odd variations as functions of r (...+[C60]2(r+)([C60C70](r+)) electron-transfer collisions. This even-odd behavior is in sharp contrast to the smooth one for fullerene monomers and may be related to even-odd effects in dimer ionization energies in agreement with results from an electrostatic model. The kinetic energy releases for dimer dissociations [predominantly yielding intact fullerenes [C60]2(r+)-->C60(r1+)+C60(r2+) in the same (r1=r2) or nearby (r1=r2+/-1) charge states] are found to be low in comparison with the corresponding model results indicating that internal excitations of the separating (intact) fullerenes are important. Experimental appearance sizes for the heavier clusters of fullerenes [C60]n(r+) (n>3 and r=2-5) compare well with predictions from a new nearest-neighbor model assuming that r unit charges in [C60]n(r+) are localized to r C60 molecules such that the Coulomb energy of the system is minimized. The system is then taken to be stable if (i) two (singly) charged C60 are not nearest neighbors and (ii) the r C60(+) molecules have binding energies to their neutral nearest neighbors which are larger than the repulsive energies for the (r-1) C60(+)-C60(+) pairs. Essential ingredients in the nearest-neighbor model are cluster geometries and the present results on dimer stabilities.     

Antiparallel-aligned neutral-ground-state and zwitterionic chromophores as a nonlinear optical material

Efficient noncentrosymmetric arrangement of nonlinear optical (NLO) chromophores with high first-order hyperpolarizability (beta) for increased electro-optical (EO) efficiency has proven challenging as strong dipolar interactions between the chromophores encourage antiparallel alignment, attenuating the macroscopic EO effect. This work explores a novel approach to simultaneously achieve large beta values while providing an adjustable dipole moment by linking a strong neutral-ground-state (NGS) NLO chromophore with positive beta to a zwitterionic (ZWI) chromophore with negative beta in an antiparallel fashion. It is proposed that the overall beta of such a structure will be the sum of the absolute values of the two types of chromophores while the dipole moment will be the difference. Molecules 1-3 were synthesized to test the feasibility of this approach. Molecular dynamics calculations and NMR data supported that the NGS chromophore component and the ZWI chromophore component self-assemble to an antiparallel conformation in chloroform. Calculations showed that the dipole moment of 1 is close to the difference of the two component chromophores. Hyper-Rayleigh scattering (HRS) studies confirmed that the first hyperpolarizability of 1 is close to the sum of the two component chromophores. These results support the idea that an antiparallel-aligned neutral-ground-state chromophore and a zwitterionic chromophore can simultaneously achieve an increase in beta and a decrease of the dipole moment.     

Extension of conjugation leading to bathochromic or hypsochromic effects in OPV series

Four OPV series 1-4 (a-d) with a terminal dialkylamino group as electron donor were prepared by Wittig-Horner reactions. To study the influence of the push-pull effect on the long-wavelength absorption, three of the four series contained terminal acceptor groups (CN, CHO, NO(2)). The length of the chromophores strongly affects the intramolecular charge transfer (ICT)-an effect which superimposes upon the extension of the conjugation. Increasing numbers n of repeat units cause an overall bathochromic shift for the purely donor-substituted series 1 a-4 a and the series 1 b-4 b with CN as weak acceptor. The two effects annihilate each other in the series 1 c-4 c with terminal CHO groups, so that the absorption maxima are almost independent of the length of the chromophore. A hypsochromic shift is observed for the series 1 d-4 d, which contains the strong acceptor group NO(2). This anomaly disappears on protonation of the dialkylamino group because the push-pull effect disappears in the ammonium salts. The results can be explained by semiempirical quantum mechanics (AM1, INDO/S). The HOMO-LUMO transition, which is mainly responsible for the ICT, becomes less important in the electron transitions S(0)-->S(1) when the distance between donor and acceptor is increased. The commonly used VB model, which contains an electroneutral and a zwitterionic resonance structure, is contrasted with a MO model with dipole segments at both ends of the OPV chains. The latter model turned out to be more appropriate-at least for donor-acceptor-substituted OPVs with n >/= 2.     

Molecular salts with diquat-based electron acceptors for nonlinear optics

We have used several techniques, including Stark spectroscopy and MO calculations, to investigate the optical and electronic properties of two new dipolar chromophoric cations containing diquat-based electron acceptor groups. Both the Stark data and the calculated parameters show that the strong electron-accepting properties of a diquat unit lead to static first hyperpolarizabilities beta0 which are considerably larger than those of a related stilbazolium chromophore. In addition, one compound has a strongly 2D quadratic NLO response, providing a very rare example of a charged molecule displaying such behavior.     

Radiationless decay of red fluorescent protein chromophore models via twisted intramolecular charge-transfer states

We use CASSCF and MRPT2 calculations to characterize the bridge photoisomerization pathways of a model red fluorescent protein (RFP) chromophore model. RFPs are homologues of the green fluorescent protein (GFP). The RFP chromophore differs from the GFP chromophore via the addition of an N-acylimine substitution to a common hydroxybenzylidene-imidazolinone (HBI) motif. We examine the substituent effects on the manifold of twisted intramolecular charge-transfer (TICT) states which mediates radiationless decay via bridge isomerization in fluorescent protein chromophore anions. We find that the substitution destabilizes states associated with isomerization about the imidazolinone-bridge bond and stabilizes states associated with phenoxy-bridge bond isomerization. We discuss the results in the context of chromophore conformation and quantum yield trends in the RFP subfamily, as well as recent studies on synthetic models where the acylimine has been replaced with an olefin.