Cis-trans isomerization of glyoxal

The CNDO/2 method with the original parameter set predicts the conformation with the mutually perpendicular CH=O groups to be the most stable isomer of glyoxal; the cis form is favoured over the trans form. The order of stabilities is not changed upon the full optimization of coordinates of the isomers. Calculations fail to reproduce the observed order of isomer stabilities unless allowance is made for limited configuration interaction with the lowest ππ* doubly excited state and for geometry optimization. Doubly excited configurations of the ππ* and σσ* types have negligible effect on the energies of isomers.     

Cis-trans isomerization and 13C-NMR chemical shift of polyphenylacetylene

Before and after cis-trans isomerization, the observed ¹³C-NMR chemical shifts of poly(phenylacetylene) (PPA) in the solid state were investigated on the basis of ¹³C-NMR chemical shift calculations within AM1 for the cis-transoidal and deflected trans-transoidal forms. Two ¹³C-resonance peaks in the observed CP/MAS ¹³C-spectrum were assigned theoretically by the ¹³C chemical shifts of the main and side chains. After thermal isomerization, the ¹³C peak of the main chain for PPA shifted upfield by 3.5 ppm, in contrast to the downfield shift of the ¹³C peak for polyacetylene. This upfield shift of trans-PPA largely was attributed to the increases of the excitation energy from the ground state to the lowest φ_π–π* state in the paramagnetic terms of ¹³C chemical shift on the main chain carbons with the increase in deflected angle τ of 0 to 80°. The ±80° deflected conformation of the trans-transoidal chain due to the cis-trans isomerization was confirmed. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 1657–1664, 1999     

Cis-trans isomerization of polybutadiene double bonds during olefin metathesis

The cis-trans isomerization of polybutadiene double bonds during metathesis degradation using WCl₆/(CH₃)₄Sn catalyst system has been estimated kinetically along with productive metathesis. The isomerization was followed both for noncrosslinked and for crosslinked polybutadiene. Ninety-six percent cis-1, 4 units are found to isomerize into ca. 75% trans-1, 4 units. The rate of stereomutation is found to be different in the presence and absence of a low-molecular-weight olefin. The results are explained with the help of a stereo model originally proposed by Katz (Advances in Organometallic Chemistry, Academic, New York, 1977, Vol. 16.)     

Cis-trans isomerization of polyunsaturated fatty acid residues in phospholipids catalyzed by thiyl radicals.

Phospholipids containing trans-unsaturated fatty acid residues are the major products of the thiyl radical attack on L-alpha-phosphatidylcholine from soybean lecithin in homogeneous solution or in liposomes (LUVET). Thiyl radicals act as the catalyst for the cis-trans isomerization, and the number of catalytic cycles depends on the reaction conditions. The presence of approximately 0.2 mM oxygen does not influence the reaction outcome but accelerates the efficiency of cis-trans isomerization in homogeneous solution. Under these conditions, the PUFA peroxidation is found to be unimportant. A detailed study of the isomerization of methyl linoleate including product studies indicates the formation of a small amount of conjugated dienes that act as inhibitors. Indeed, all-trans-retinol substantially retarded the isomerization process.     

Crystallization-induced reactions of copolymers. II. Cis-trans isomerization of 1,4-poly-1,3-butadiene

The cis-trans photoisomerization reaction of 1,4-polybutadiene was carried out below the melting points on films of polymers containing high trans-1,4 contents. Under the proper conditions of temperature and polymer composition, the reaction was observed to undergo an anti-equilibrium behavior, which was attributed to an irreversible crystallization of repeating units after isomerization from cis to trans structure. As a result, the trans composition passed through a minimum with reaction time while crystallinity increased throughout the reaction, and unexpectedly the β crystalline form was observed well below the α–β transition temperature. The composition–time behavior observed was rationalized on the basis of incorporation of trans units into crystalline regions on the lamellar fold surfaces and discussed within the framework of the proposed requirements for crystallization-induced reactions of copolymers.     

Cis-trans isomerization in the S1 state of acetylene: identification of cis-well vibrational levels

A systematic analysis of the S(1)-trans (A?(1)A(u)) state of acetylene, using IR-UV double resonance along with one-photon fluorescence excitation spectra, has allowed assignment of at least part of every single vibrational state or polyad up to a vibrational energy of 4200 cm(-1). Four observed vibrational levels remain unassigned, for which no place can be found in the level structure of the trans-well. The most prominent of these lies at 46?175 cm(-1). Its (13)C isotope shift, exceptionally long radiative lifetime, unexpected rotational selection rules, and lack of significant Zeeman effect, combined with the fact that no other singlet electronic states are expected at this energy, indicate that it is a vibrational level of the S(1)-cis isomer (A?(1)A(2)). Guided by ab initio calculations [J. H. Baraban, A. R. Beck, A. H. Steeves, J. F. Stanton, and R. W. Field, J. Chem. Phys. 134, 244311 (2011)] of the cis-well vibrational frequencies, the vibrational assignments of these four levels can be established from their vibrational symmetries together with the (13)C isotope shift of the 46?175 cm(-1) level (assigned here as cis-3(1)6(1)). The S(1)-cis zero-point level is deduced to lie near 44?900 cm(-1), and the ν(6) vibrational frequency of the S(1)-cis well is found to be roughly 565 cm(-1); these values are in remarkably good agreement with the results of recent ab initio calculations. The 46?175 cm(-1) vibrational level is found to have a 3.9 cm(-1) staggering of its K-rotational structure as a result of quantum mechanical tunneling through the isomerization barrier. Such tunneling does not give rise to ammonia-type inversion doubling, because the cis and trans isomers are not equivalent; instead the odd-K rotational levels of a given vibrational level are systematically shifted relative to the even-K rotational levels, leading to a staggering of the K-structure. These various observations represent the first definite assignment of an isomer of acetylene that was previously thought to be unobservable, as well as the first high resolution spectroscopic results describing cis-trans isomerization.     

Cis-trans isomerization of chemically activated 1-methylallyl radical and fate of the resulting 2-buten-1-peroxy radical

The cis-trans isomerization of chemically activated 1-methylallyl is investigated using RRKM/Master Equation methods for a range of pressures and temperatures. This system is a prototype for a large range of allylic radicals formed from highly exothermic (～35 kcal/mol) OH + alkene reactions. Energies, vibrational frequencies, anharmonic constants, and the torsional potential of the methyl group are computed with density functional theory for both isomers and the transition state connecting them. Chemically activated radicals are found to undergo rapid cis-trans isomerization leading to stabilization of significant amounts of both isomers. In addition, the thermal rate constant for trans → cis isomerization of 1-methylallyl is computed to be high enough to dominate reaction with O(2) in 10 atm of air at 700 K, so models of the chemistry of the (more abundant and more commonly studied) trans-alkenes may need to be modified to include the cis isomers of the corresponding allylic radicals. Addition of molecular oxygen to 1-methylallyl radical can form 2-butene-1-peroxy radical (CH(3)CH═CHCH(2)OO(?)), and quantum chemistry is used to thoroughly explore the possible unimolecular reactions of the cis and trans isomers of this radical. The cis isomer of the 2-butene-1-peroxy radical has the lowest barrier (via 1,6 H-shift) to further reaction, but this barrier appears to be too high to compete with loss of O(2).     

On the polymerization of acetylenic derivatives—XXXVII: Cis-trans isomerization of polyarylacetylenes through their cyclic halonium ions

Cyclic halonium ions of high cis polyarylacetylenes were isolated. Pure trans polyarylacetylenes [polyphenylacetylene, poly(a-ethynylnaphthalene), poly(#-ethynylnaphthalene), poly(N-ethynylcarbazole), poly(3-ethynylphenanthrene) and poly(9-ethynylanthracene)] were obtained after the halogen was recovered from these compounds.     

Cis-trans photoisomerization of fluorescent-protein chromophores

Photochromic variants of fluorescent proteins are opening the way to a number of opportunities for high-sensitivity regioselective studies in the cellular environment and may even lead to applications in information and communication technology. Yet, the detailed photophysical processes at the basis of photoswitching have not been fully clarified. In this paper, we used synthetic FP chromophores to clarify the photophysical processes associated with the photochromic behavior. In particular, we investigated the spectral modification of synthetic chromophore analogues of wild-type green fluorescent protein (GFP), Y66F GFP (BFPF), and Y66W GFP (CFP) upon irradiation in solutions of different polarities. We found that the cis-trans photoisomerization mechanism can be induced in all the chromophores. The structural assignments were carried out both by NMR measurements and DFT calculations. Remarkably, we determined for the first time the spectra of neutral trans isomers in different solvents. Finally, we calculated the photoconversion quantum yields by absorption measurements under continuous illumination at different times and by a nanosecond laser-flash photolysis method. Our results indicate that cis-trans photoisomerization is a general mechanism of FP chromophores whose efficiency is modulated by the detailed mutant-specific protein environment.     

Redox-conjugated reversible isomerization of ferrocenylazobenzene with a single green light

A new reversible isomerization cycle for meta-ferrocenylazobenzene accomplished by combination of a single green light (546 nm) and redox change between Fe(II) and Fe(III) was discovered. In the Fe(II) state, trans-to-cis isomerization proceeded upon the green light irradiation exciting the metal-to-ligand charge transfer (MLCT) in a high quantum yield (Phit-->c = 0.51) which exceeds that of azobenzene (Phit-->c = 0.12 (313 nm excitation)). The cis molar ratio reached 35% in the photostationary state. The oxidation to the Fe(III) state followed by irradiation with the same green light led to the cis-to-trans back-reaction to recover almost all of the trans-form. The "on-off switching" of the MLCT character played an important role in the redox-dependent response to the green light for the isomerization. The photoisomerization behavior of ferrocenylazobenzenes was strongly dependent on the substitution position of the ferrocenyl moiety on the benzene ring. The MLCT excitation was not effective for the trans-to-cis conversion in para-ferrocenylazobenzene. Time-dependent density functional theory (TD-DFT) calculations for meta- and para-ferrcenylazobenzene showed that the origin of the visible band (MLCT band) is different. The initial orbital for the MLCT in meta-ferrocenylazobenzene is delocalized over Fe and the Cp ring, while that in para-ferrocenylazobenzene is localized on the iron.     

糖尿病综合症新药Epalrestat的光敏异构化研究

Epalrestat是一种治疗糖尿病晚期综合症的新药。它可以缓解糖尿病型视网膜病变,运动神经传导阻滞等症状。绕丹宁乙酸与α-甲基肉桂醛在乙酸中缩合得到了Epalrestat,并利用了高压液相色谱,X衍射,高分辨率核磁共振,对它的立体异构进行了研究,还研究了它的保存条件。发现Epalrestat的四个立体异构体中(Z,E)构型占96.5%。见光后易发生异构化,产物中(Z,Z)构型的含量可达到37.7%。而避光保存一年后(Z,E)仍能保持93.6%的含量。     

Extension of working range in Zeeman graphite furnace atomic absorption spectrometry by nonlinear calibration with prior correction for stray light

The nonlinear working range of a Perkin-Elmer 4100Zl atomic absorption spectrometer was improved in three steps. Firstly, each absorbance datum within the transient profile was corrected for the presence of stray light by an algorithm originally developed by L'vov and co-workers (Spectrochim. Acta Part B, 47 (1992) 889–895 and 1187–1202), but with the incorporation of the Newton method of successive approximations (Spectrochim. Acta Part B, 49 (1994) 1643–1656. Secondly, a dip correction procedure was performed on temporal signal profiles that exhibited a dip due to rollover. In the final step, an analytically useful working curve was generated by the nonlinear calibration routine of Barnett (Spectrochim. Acta Part B, 39 (1984) 829). Goodness of fit between the resultant calibration curve and the data was measured by the method suggested by Miller-Ihli et al. (Spectrochim. Acta Part B, 39 (1984) 1603) that is based on the sum of squares of the percentage deviation (SSPD) and the root mean square (RMS) percentage deviation. For lead, silver, copper, thallium, and cadmium, the analytical nonlinear working range was increased by as much as one and a half orders of magnitude, without any significant effect on the RMS. For chromium and manganese, no significant improvement in the nonlinear working range was observed, while the RMS improved by 50%. In the case of nickel, neither the working range nor the RMS was improved.     

Ordering of azobenzenes by two-photon isomerization

We report on light induced orientation by two-photon isomerization of azobenzenes in films of polymer. The dynamics of isomerization and orientation by one-photon absorption and two-photon absorption (TPA) are similar, and TPA creates a degree of molecular orientation which is comparable to that achieved by single-photon isomerization, in agreement with the theoretical predictions of two-photon isomeric orientation.     

Syn-anti isomerization of aldols by enolization

A variety of aldol adducts are shown to undergo efficient syn-anti isomerization in the presence of imidazole by an enolization mechanism. Isomerizations are high yielding and occur with little or none of the usual byproducts arising from competing elimination or retroaldol reactions. Most substrates reach equilibrium within 0.3-3 days at ambient temperature in chloroform, benzene, or dichloromethane containing 0.3-1 M imidazole. The process is particularly facile for aldols derived from tetrahydro-4H-thiopyran-4-one with rate constants for equilibration varying over ca. 1 order of magnitude for the adducts studied; structurally related aldols derived from cyclohexanone isomerized ca. 3-4 times slower. Isomerization of the acyclic aldol 5-hydroxy-4-methyl-5-phenyl-3-pentanone required heating to 60 degrees C but was achieved with minimal (<5%) retroaldol or elimination. A methoxymethyl ether derivative isomerized 30-40 times slower than the parent aldol. Isomerization of alpha,alpha'-disubstituted aldols and alpha,alpha'-bisaldols indicated low regioselectivity in the enolization. The synthetic utility of the process was demonstrated with the effective preparation of aldol stereoisomers unobtainable by direct methods.     

Effect of metals on the catalytic activity of sulfated zirconia for light naphtha isomerization

We studied on the function of the metal in the sulfated zirconia(SO₄^2–/ZrO₂) catalyst for the isomerization reaction of light paraffins. The addition of Pt to the SO₄^2–/ZrO₂ carrier could keep the high catalytic activity. The improvement in this isomerization activity is because Pt promotes removal of the coke precursor deposited on the catalyst surface. Though this catalytic function was observed in other transition metals, such as Pd, Ru, Ni, Rh and W, Pt exhibited the highest effect among them. It was further found that the Pd/SO₄^2–/ZrO₂–Al₂O₃ catalyst possessed a catalytic function for desulfurization of sulfur-containing light naphtha in addition to the skeletal isomerization. The sulfur tolerance of catalyst depended on the method of adding Pd, and the catalyst prepared by impregnation of the SO₄^2–/ZrO₂–Al₂O₃ with an aqueous solution of Pd exhibited the highest sulfur tolerance.Further, we investigated the improvement in sulfur tolerance of the Pt/SO₄^2–/ZrO₂–Al₂O₃ catalyst by impregnation of Pd. The results of EPMA analysis indicated that this catalyst was a hybrid-type one (Pt/SO₄^2–/ZrO₂–Pd/Al₂O₃) in which Pt/SO₄^2–/ZrO₂ particles and Pd/Al₂O₃ particles adjoined closely. This hybrid catalyst possessed a very high sulfur tolerance to the raw light naphtha that was obtained from the atmospheric distillation apparatus, although this light naphtha contained much sulfur. We assume that such a high sulfur tolerance in the hybrid catalyst is brought about by the isomerization function of Pt/SO₄^2–/ZrO₂ particles and the hydrodesulfurization function of Pd/Al₂O₃ particles. Besides, since the hybrid catalyst also provides high catalytic activity in the isomerization of HDS light naphtha, we suggest that the Pd/Al₂O₃ particles supply atomic hydrogen to the Pt/SO₄^2–/ZrO₂ particles by homolytic dissociation of gaseous hydrogen and also enhance the sulfur tolerance of Pt/SO₄^2–/ZrO₂ particles. Finally, we also propose the most suitable location of Pd and Pt in the metal-supported SO₄^2–/ZrO₂–Al₂O₃ catalyst.     

Electric field-induced isomerization of azobenzene by STM

The electric field applied between the tip of a scanning tunneling microscope and a metallic surface is shown to induce the reversible trans-cis isomerization of single azobenzene derivatives adsorbed on a Au(111) surface. The investigated molecule is symmetrically equipped with four tert-butyl groups, which decouple the azobenzene core from the metallic surface, facilitating the formation of highly ordered islands. Due to the spatial extension of the electric field, it is possible to switch many molecules within the same island simultaneously.     

Cis-trans isomerism of 3-(β-nitrovinyl) indoles

Conclusions The stability of the Z isomers of-nitrovinylindoles is determined mainly by the ability of the substituent to conjugate with their system of the aromatic ring.Translated from Izvestiya Akademii Nauka SSSR, Seriya Khimicheskaya, No. 7, pp. 1650–1652, July, 1977.