Conformational studies on heteroleptic trifluoromethyl‐substituted phenylboranes

Organoboranes carrying electron‐withdrawing substituents are commonly used as Lewis acidic catalysts or cocatalysts in a variety of organic processes. These Lewis acids also became popular through their application in `frustrated Lewis pairs', i.e. combinations of Lewis acids and bases that are unable to fully neutralize each other due to steric or electronic effects. We have determined the crystal and molecular structures of four heteroleptic arylboranes carrying 2‐(trifluoromethyl)phenyl, 2,6‐bis(trifluoromethyl)phenyl, 3,5‐bis(trifluoromethyl)phenyl or mesityl substituents. [3,5‐Bis(trifluoromethyl)phenyl]bis[2‐(trifluoromethyl)phenyl]borane, C₂₂H₁₁BF₁₂, (I), crystallizes with two molecules in the asymmetric unit which show very similar geometric parameters. In one of the two molecules, both trifluoromethyl groups of the 3,5‐bis(trifluoromethyl)phenyl substituent are disordered over two positions. In [3,5‐bis(trifluoromethyl)phenyl]bis[2,6‐bis(trifluoromethyl)phenyl]borane, C₂₄H₉BF₁₈, (II), only one of the two meta‐trifluoromethyl groups is disordered. In [2,6‐bis(trifluoromethyl)phenyl]bis[3,5‐bis(trifluoromethyl)phenyl]borane, C₂₄H₉BF₁₈, (III), both meta‐trifluoromethyl groups of only one 3,5‐bis(trifluoromethyl)phenyl ring are disordered. [3,5‐Bis(trifluoromethyl)phenyl]dimesitylborane, C₂₆H₂₅BF₆, (IV), carries only one meta‐trifluoromethyl‐substituted phenyl ring, with one of the two trifluoromethyl groups disordered over two positions. In addition to compounds (I)–(IV), the structure of bis[2,6‐bis(trifluoromethyl)phenyl]fluoroborane, C₁₆H₆BF₁₃, (V), is presented. None of the ortho‐trifluoromethyl groups is disordered in any of the five compounds. In all the structures, the boron centre is in a trigonal planar coordination. Nevertheless, the bond angles around this atom vary according to the bulkiness and mutual repulsion of the substituents of the phenyl rings. Also, the ortho‐trifluoromethyl‐substituted phenyl rings usually show longer B—C bonds and tend to be tilted out of the BC₃ plane by a higher degree than the phenyl rings carrying ortho H atoms. A comparison with related structures corroborates the conclusions regarding the geometric parameters of the boron centre drawn from the five structures in this paper. On the other hand, CF₃ groups in meta positions do not seem to have a marked effect on the geometry involving the boron centre. Furthermore, it has been observed for the structures reported here and those reported previously that for CF₃ groups in ortho positions of the aromatic ring, disorder of the F atoms is less probable than for CF₃ groups in meta or para positions of the ring.     

Strategies for the synthesis of chiral, bidentate bis(perfluoroorganyl)phosphane ligands

Chiral, bidentate phosphane ligands, so-called PP ligands, are most frequently synthesized by reacting chiral ditosylates with diarylphosphanide ions.To use the P(CF₃)₂⁻ ion in nucleophilic substitution reactions, it is necessary to reduce the negative hyperconjugation, which is associated with a C-F activation. For this reason we synthesized different bis(trifluoromethyl)phosphanido complexes of mercury, silver and tungsten and investigated their use in nucleophilic substitution reactions. The most reactive compound, resulting from this study so far, is the pentacarbonylbis(trifluoromethyl)phosphanidotungstenate, [W{P(CF₃)₂}(CO)₅]⁻, which exhibits nearly the same bonding situation for the P(CF₃)₂ unit as in the free P(CF₃)₂⁻ ion. For use in synthesis of bis(trifluoromethyl)phosphane derivatives, Lewis acids are desirable, which stabilize the P(CF₃)₂⁻ ion by an intermediary formation of a donor acceptor adduct and can be split off after the synthesis of bis(trifluoromethyl)phosphane derivatives, as could be achieved using the extremely weak Lewis acids, CS₂ and acetone. These results could be established in the synthesis of the first example of an chiral, bidentate bis(trifluoromethyl)phosphane derivative.To synthesize a chiral, bidentate bis(pentafluorophenyl)phosphane derivative, a different synthetic strategy is necessary that does not involve the P(C₆F₅)₂⁻ ion, which decomposes even at low temperature. The implementation of functional P(CN)₂⁻ ions leads to the synthesis of functional, chiral bidentate dicyanophosphane derivatives which finally can be transformed into the corresponding bis(pentafluorophenyl)phosphane derivatives.     

Activation of a Metal‐Halogen Bond by Halogen Bonding

In recent years, the non‐covalent interaction of halogen bonding (XB) has found increasing application in organocatalysis. However, reports of the activation of metal‐ligand bonds by XB have so far been limited to a few reactions with elemental iodine or bromine. Herein, we present the activation of metal‐halogen bonds by two classes of inert halogen bond donors and the use of the resulting activated complexes in homogenous gold catalysis. The only recently explored class of iodolium derivatives were shown to be effective activators in two test reactions and their activity could be modulated by blocking of the Lewis acidic sites. Bis(benzimidazolium)‐based halogen bonding activators provided even more rapid conversion, while the non‐iodinated reference compound showed little activity. The role of halogen bonding in the activation of metal‐halogen bonds was further investigated by NMR experiments and DFT calculations, which support the mode of activation occurring via halogen bonding.     

“Anti-electrostatic” Halogen Bonding between Ions of Like Charge

Halogen bonding occurs between molecules featuring Lewis acidic halogen substituents and Lewis bases. It is often rationalized as a predominantly electrostatic interaction and thus interactions between ions of like charge (e. g., of anionic halogen bond donors with halides) seem counter-intuitive. Herein, we provide an overview on such complexes. First, theoretical studies are described and their findings are compared. Next, experimental evidences are presented in the form of crystal structure database analyses, recent examples of strong “anti-electrostatic” halogen bonding in crystals, and the observation of such interactions also in solution. We then compare these complexes to select examples of “counter-intuitive” adducts formed by other interactions, like hydrogen bonding. Finally, we comment on key differences between charge-transfer and electrostatic polarization.     

Synthesis of the first chiral bidendate bis(trifluoromethyl)phosphane ligand through stabilization of the bis(trifluoromethyl)phosphanide anion in the presence of acetone

Lewis acid/Lewis base adduct formation of the P(CF3)2- ion and acetone leads to a reduced negative hyperconjugation and, therefore, limits the C--F bond activation. The resulting increased thermal stability of the P(CF3)2- ion in the presence of acetone allows selective substitutions and enables the synthesis of the first example of a chiral, bidentate bis(trifluoromethyl)phosphane ligand: a DIOP derivative, [(2,2-dimethyl-1,3-dioxolane-4,5-diyl)bis(methylene)]bis(diphenylphosphane), in which the phenyl groups at the phosphorus atoms are replaced by strong electron-withdrawing trifluoromethyl groups. The resulting high electron-acceptor strength of the synthesized bidentate (CF3)2P ligand is demonstrated by a structural and vibrational study of the corresponding tetracarbonyl-molybdenum complex. The stabilization of the P(CF3)2- ion in the presence of acetone is based on the formation of a dynamic Lewis acid/Lewis base couple, (CF3)2PC(CH3)2O-. Although there is no spectroscopic evidence for the formation of the formulated alcoholate ion, the intermediate formation of (CF3)2PC(CH3)2O- could be proved through the reaction with (CF3)2PP(CF3)2, which yields the novel phosphane-phosphinite ligand (CF3)2PC(CH3)2OP(CF3)2. This ligand readily forms square-planar Pt(II) complexes upon treatment with solid PtCl2.     

Quadrupole correction for halogen bonding description in virtual screening and molecular docking

Halogen bonding is electrostatic attraction between halogen atoms in an organic molecule and Lewis bases. It is important to consider halogen bonding during molecular docking and virtual screening, in particular, at early stages of drug development. A new scoring function AutoDock-XB, which takes into account halogen bonding by means of the quadrupole correction, has been constructed. The function has been tested for a series of phosphodiesterase-5 inhibitors.     

Insights into the strength and origin of halogen bonding: the halobenzene-formaldehyde dimer

The observation of short halogen-carbonyl oxygen interactions in protein-ligand complexes has spurred us to use computational tools to better understand the strength of halogen bonding interactions. In this study we have produced potential energy curves for the halogen bonding interactions of several halobenzene-formaldehyde complexes. It was found that, for most halogen substituents, a halobenzene and formaldehyde form stable halogen bonded complexes with interaction energies that increase as the size of the halogen substituent increases.     

Bidentate Chiral Bis(imidazolium)‐Based Halogen‐Bond Donors: Synthesis and Applications in Enantioselective Recognition and Catalysis

Even though halogen bonding—the noncovalent interaction between electrophilic halogen substituents and Lewis bases—has now been established in molecular recognition and catalysis, its use in enantioselective processes is still very rarely explored. Herein, we present the synthesis of chiral bidentate halogen‐bond donors based on two iodoimidazolium units with rigidly attached chiral sidearms. With these Lewis acids, chiral recognition of a racemic diamine is achieved in NMR studies. DFT calculations support a 1:1 interaction of the halogen‐bond donor with both enantiomers and indicate that the chiral recognition is based on a different spatial orientation of the Lewis bases in the halogen‐bonded complexes. In addition, moderate enantioselectivity is achieved in a Mukaiyama aldol reaction with a preorganized variant of the chiral halogen‐bond donor. This represents the first case in which asymmetric induction was realized with a pure halogen‐bond donor lacking any additional active functional groups.     

A Halogen‐Bonding Bis‐triazolium Rotaxane for Halide‐Selective Anion Recognition

A systematic study on the anion‐binding properties of acyclic halogen‐ and hydrogen‐bonding bis‐triazolium carbazole receptors is described. The halide‐binding potency of halogen‐bonding bis‐iodotriazolium carbazole receptors was found to be far superior to their hydrogen‐bonding bis‐triazolium‐based analogues. This led to the synthesis of a mixed halogen‐ and hydrogen‐bonding rotaxane host containing a bis‐iodotriazolium carbazole axle component. The rotaxane’s anion recognition properties, determined by ¹H NMR titration experiments in a competitive aqueous solvent mixture, demonstrated the preorganised halogen‐bonding interlocked host cavity to be halide‐selective, with a strong binding affinity for bromide.     

Electronic structure of the sulfonyl and phosphonyl groups: a computational and crystallographic study

A computational and X-ray crystallographic investigation of the electronic and geometric structures of a range of sulfonyl (-SO(2)-) and phosphonyl (-PO(2)--) containing species was undertaken to investigate the nature of valency and bonding in these functional groups. The traditional representation of sulfonyl and phosphonyl species is with octet-violating Lewis structures, which require d-orbital participation at the central atom. However, computational studies cast serious doubt upon this bonding model. In this work, we have employed NBO/NRT analysis to investigate hybridization, atomic formal charges, donor-acceptor interactions, and resonance structure contributions. Our results predict that within sulfonyl and phosphonyl systems, bonding interactions are highly polarized, of the form X+-Y- (X = P, S), and possess additional contributions from reciprocal n --> sigma* interactions where substituents off sulfur or phosphorus simultaneously act as donors and acceptors. Experimental evidence for the proposed bonding arrangement is provided for the sulfonyl functional group through a series of low-temperature X-ray structure correlations for sulfate monoesters, sulfamates, and methanesulfonates. Examination of changes to bond lengths and geometries upon substituent variation support the computational results. Together, our studies lend support for a bonding network in sulfonyl and phosphonyl groups composed of polar interactions augmented with reciprocal hyperconjugative bonding, which does not necessitate significant d-orbital participation nor formal octet violation at the central sulfur or phosphorus.     

Halogenbrücken in der Organokatalyse

Halogen bonding is a noncovalent interaction between electrophilic halogen substituents and Lewis bases. Its overall interaction energy is composed of several contributions, namely electrostatics, charge‐transfer and dispersion. This article describes the use of halogen bonding in organocatalysis featuring a test reaction in which the halogen‐based catalyst abstracts chloride from the substrate to form a reactive carbenium species. Other potential modes of activation were ruled out be several comparison experiments.     

Halogen bonding: a theoretical study based on atomic multipoles derived from quantum theory of atoms in molecules

Atomic multipole moments derived from quantum theory of atoms in molecules are used to study halogen bonds in dihalogens (with general formula YX, in which X refers to the halogen directly interacted with the Lewis base) and some molecules containing C–X group. Multipole expansion is used to calculate the electrostatic potential in a vicinity of halogen atom (which is involved in halogen bonding) in terms of atomic monopole, dipole, and quadrupole moments. In all the cases, the zz component of atomic traceless quadrupole moments (where z axis taken along Y–X or C–X bonds) of the halogens plays a stabilizing role in halogen bond formation. The effects of atomic monopole and dipole moments on the formation of a halogen bond in YX molecules depend on Y and X atoms. In Br₂ and Cl₂, the monopole moment of halogens is zero and has no contribution in electrostatic potential and hence in halogen bonding, while in ClBr, FBr, and FCl it is positive and therefore stabilize the halogen bonds. On the other hand, the negative sign of dipole moment of X in all the YX molecules weakens the corresponding halogen bonds. In the C–X-containing molecules, monopole and dipole moments of X atom are negative and consequently destabilize the halogen bonds. So, in these molecules the quadrupole moment of X atom is the only electrostatic term which strengthens the halogen bonds. In addition, we found good linear correlations between halogen bonds strength and electrostatic potentials calculated from multipole expansion.     

Properties of halogen atoms for representing intermolecular electrostatic interactions related to halogen bonding and their substituent effects

The electrostatic properties of halogen atoms are studied theoretically in relation to their ability of halogen bonding, which is an attractive intermolecular interaction of a covalently bonded halogen atom with a negatively charged atom of a neighboring molecule. The electric quadrupole (of electronic origin) with a positive zz component Θ_zz of a covalently bonded halogen atom, where the z axis is taken along the covalent bond involving the halogen atom, is mainly responsible for the attractive electrostatic interaction with a negatively charged atom. This positive Θ_zz is an intrinsic property of halogen atoms with the p_x²p_y²p_z configuration of the valence electronic shell, as shown by ab initio molecular orbital calculations for isolated halogen atoms with this electronic configuration, and increases in the order of F < Cl < Br < I, in parallel with the known general sequence of the strength of halogen bonding. For halogen‐containing aromatic compounds, the substituent effects on the electrostatic properties are also studied. It is shown that the magnitude of Θ_zz and the electric field originating from it are rather insensitive to the substituent effect, whereas the electric field originating from atomic partial charges has a large substituent effect. The latter electric field tends to partially cancel the former. The extent of this partial cancellation is reduced in the order of Cl < Br < I and is also reducible by proper substitution on or within the six‐membered ring of halobenzene. Perspectives on the development of potential function parameters applicable to halogen‐bonding systems are also briefly discussed. © 2009 Wiley Periodicals, Inc. J Comput Chem 2010     

Chalcogen Bonding Catalysis of a Nitro‐Michael Reaction

Chalcogen bonding is the non‐covalent interaction between Lewis acidic chalcogen substituents and Lewis bases. Herein, we present the first application of dicationic tellurium‐based chalcogen bond donors in the nitro‐Michael reaction between trans‐β‐nitrostyrene and indoles. This also constitutes the first activation of nitro derivatives by chalcogen bonding (and halogen bonding). The catalysts showed rate accelerations of more than a factor of 300 compared to strongly Lewis acidic hydrogen bond donors. Several comparison experiments, titrations, and DFT calculations support a chalcogen‐bonding‐based mode of activation of β‐nitrostyrene.     

Theoretical study on the interactions of halogen‐bonds and pnicogen‐bonds in phosphine derivatives with Br2, BrCl,and BrF

The MP2 ab initio quantum chemistry methods were utilized to study the halogen‐bond and pnicogen‐bond system formed between PH₂X (X = Br, CH₃, OH, CN, NO₂, CF₃) and BrY (Y = Br, Cl, F). Calculated results show that all substituent can form halogen‐bond complexes while part substituent can form pnicogen‐bond complexes. Traditional, chlorine‐shared and ion‐pair halogen‐bonds complexes have been found with the different substituent X and Y. The halogen‐bonds are stronger than the related pnicogen‐bonds. For halogen‐bonds, strongly electronegative substituents which are connected to the Lewis acid can strengthen the bonds and significantly influenced the structures and properties of the compounds. In contrast, the substituents which connected to the Lewis bases can produce opposite effects. The interaction energies of halogen‐bonds are 2.56 to 32.06 kcal·mol^?1; The strongest halogen‐bond was found in the complex of PH₂OH???BrF. The interaction energies of pnicogen‐bonds are in the range 1.20 to 2.28 kcal·mol^?1; the strongest pnicogen‐bond was found in PH₂Br???Br₂ complex. The charge transfer of lp(P) ? σ*(Br? Y), lp(F) ? σ*(Br? P), and lp(Br) ? σ*(X? P) play important roles in the formation of the halogen‐bonds and pnicogen‐bonds, which lead to polarization of the monomers. The polarization caused by the halogen‐bond is more obvious than that by the pnicogen‐bond, resulting in that some halogen‐bonds having little covalent character. The symmetry adapted perturbation theory (SAPT) energy decomposition analysis showes that the halogen‐bond and pnicogen‐bond interactions are predominantly electrostatic and dispersion, respectively.     

Iodine(III) Derivatives as Halogen Bonding Organocatalysts

Hypervalent iodine(III) derivatives are known as versatile reagents in organic synthesis, but there is only one previous report on their use as Lewis acidic organocatalysts. Herein, we present first strong indications for the crucial role of halogen bonding in this kind of catalyses. To this end, the solvolysis of benzhydryl chloride and the Diels–Alder reaction of cyclopentadiene with methyl vinyl ketone served as benchmark reactions for halide abstraction and the activation of neutral compounds. Iodolium compounds (cyclic diaryl iodonium species) were used as activators or catalysts, and we were able to markedly reduce or completely switch off their activity by sterically blocking one or two of their electrophilic axes. Compared with previously established bidentate cationic halogen bond donors, the monodentate organoiodine derivatives used herein are at least similarly active (in the Diels–Alder reaction) or even decidedly more active (in benzhydryl chloride solvolysis).     

A Potent Halogen‐Bonding Donor Motif for Anion Recognition and Anion Template Mechanical Bond Synthesis

The covalent attachment of electron deficient perfluoroaryl substituents to a bis‐iodotriazole pyridinium group produces a remarkably potent halogen bonding donor motif for anion recognition in aqueous media. Such a motif also establishes halogen bonding anion templation as a highly efficient method for constructing a mechanically interlocked molecule in unprecedented near quantitative yield. The resulting bis‐perfluoroaryl substituted iodotriazole pyridinium axle containing halogen bonding [2]rotaxane host exhibits exceptionally strong halide binding affinities in competitive 50 % water containing aqueous media, by a factor of at least three orders of magnitude greater in comparison to a hydrogen bonding rotaxane host analogue. These observations further champion and advance halogen bonding as a powerful tool for recognizing anions in aqueous media.     

Halogen Bonding: An Interim Discussion

Halogen bonding is a noncovalent interaction that is receiving rapidly increasing attention because of its significance in biological systems and its importance in the design of new materials in a variety of areas, for example, electronics, nonlinear optical activity, and pharmaceuticals. The interactions can be understood in terms of electrostatics/polarization and dispersion; they involve a region of positive electrostatic potential on a covalently bonded halogen and a negative site, such as the lone pair of a Lewis base. The positive potential, labeled a σ hole, is on the extension of the covalent bond to the halogen, which accounts for the characteristic near‐linearity of halogen bonding. In many instances, the lateral sides of the halogen have negative electrostatic potentials, allowing it to also interact favorably with positive sites. In this discussion, after looking at some of the experimental observations of halogen bonding, we address the origins of σ holes, the factors that govern the magnitudes of their electrostatic potentials, and the properties of the resulting complexes with negative sites. The relationship of halogen and hydrogen bonding is examined. We also point out that σ‐hole interactions are not limited to halogens, but can also involve covalently bonded atoms of Groups IV–VI. Examples of applications in biological/medicinal chemistry and in crystal engineering are mentioned, taking note that halogen bonding can be “tuned” to fit various requirements, that is, strength of interaction, steric factors, and so forth.     

Correlations between computation and experimental thermodynamics of halogen bonding

Correlations between experimental, solution-phase thermodynamic data and calculated gas-phase energies of interaction are investigated for noncovalent halogen bonding interactions between electron-deficient iodo compounds and Lewis bases. The experimental data consist of free energies of interaction spanning roughly 7 kcal/mol; they encompass halogen bonds involving both organic (iodoperfluoroarene or iodoperfluoroalkane) and inorganic (I(2), IBr, ICN) donors with nitrogen- and oxygen-based acceptors and are divided into two sets according to the identity of the solvent in which they were determined (alkanes or CCl(4)). Adiabatic energies of halogen bonding were calculated using a variety of methods, including 22 DFT exchange-correlation functionals, using geometries optimized at the MP2/6-31+G(d,p) level of theory. Certain DFT functionals, particularly the B97-1, B97-2, and B98 family, provide outstanding linear correlations with the experimental thermodynamic data, as assessed by a variety of statistical methods.