Monte Carlo simulation of a polymer-analogous reaction in a polymer blend

The autocatalytic polymer-analogous reaction A → B in a blend composed of two contacting layers of compatible homopolymers A and B is studied by numerical simulation using the dynamic continuum Monte Carlo method. The evolution of the numerical density of units A and units initially belonged to the chains of homopolymer A is investigated in the course of the reaction and interdiffusion. Local characteristics of the distribution of the homopolymer with respect to its composition and blocks A and B with respect to their length are calculated at different times. The dispersions of the above distributions are appreciably higher than the corresponding dispersion of the Bernoullian copolymer of the same average composition, despite the random character of the reaction. This effect can be provided by changes in the composition of the blend on the scale of the reacting chain as well as by the diffusive mixing of the above chains. For the products of the polymer-analogous reaction, the broadening of the compositional distribution is predicted also by the theoretical model, which describes interdiffusion in the reacting system on scales that are markedly greater than the size of a polymer chain.     

Influence of the reaction mechanism on the time course of the entropy production during reversible polymerization

The paper shows the influence of the reaction mechanism on the time course of the entropy production sigma in a closed system during reversible polymerization. We consider two different reaction mechanisms with (a) being a polycondensation and (b) a chain growth mechanism. For both mechanisms explicit expressions for the entropy production sigma as a function of time t are derived. To demonstrate the application of these general expressions we consider two different polymerization experiments where the reaction starts (i) from monomer molecules polymerizing to a defined number average chain length x(n,eq) and (ii) from monodisperse polymer molecules reacting with each other under the constraint that x(n) is the same at the beginning and the end of the reaction. In both cases we treat the system to be ideal and describe the kinetics of the reversible polymerization reactions using two kinetic constants for the forward and backward reactions, respectively. Under these assumptions the difference in the curvature of the entropy production sigma between a polycondensation and a chain growth mechanism is only marginal if the reaction starts from monomer molecules polymerizing to a defined number average chain length x(n,eq).     

Automatic determination of reaction mappings and reaction center information. 2. Validation on a biochemical reaction database

The correct identification of the reacting bonds and atoms is a prerequisite for the analysis of the reaction mechanism. We have recently developed a method based on the Imaginary Transition State Energy Minimization approach for automatically determining the reaction center information and the atom-atom mapping numbers. We test here the accuracy of this ITSE approach by comparing the predictions of the method against more than 1500 manually annotated reactions from BioPath, a comprehensive database of biochemical reactions. The results show high agreement between manually annotated mappings and computational predictions (98.4%), with significant discrepancies in only 24 cases out of 1542 (1.6%). This result validates both the computational prediction and the database, at the same time, as the results of the former agree with expert knowledge and the latter appears largely self-consistent, and consistent with a simple principle. In 10 of the discrepant cases, simple chemical arguments or independent literature studies support the predicted reaction center. In five reaction instances the differences in the automatically and manually annotated mappings are described in detail. Finally, in approximately 200 cases the algorithm finds alternate reaction centers, which need to be studied on a case by case basis, as the exact choice of the alternative may depend on the enzyme catalyzing the reaction.     

Macromolecular reaction and interdiffusion in a compatible polymer blend

A theory describing slow macromolecular reaction and interdiffuion in a compatible polymer blend is suggested based on the linear non-equilibrium thermodynamic principles. A simple model system is considered. In a blend consisting initially of homopolymers A and B, the transformation A → B proceeds with the B units accelerating the reaction. A system of diffusive-reaction equations for relevant macroscopic variables is derived. The randomness of the reacting chains' structure gives rise to a new interdiffusion mode in addition to the reacting polymer-homopolymer B interdiffusion. Numerical calculations reveal that the diffusive intermixing of reacting chains of different composition may significantly affect the reaction rate and the local compositional heterogeneity as well. It is possible to discriminate the fast- and the slow-mode theories of interdiffusion using reaction kinetics data. Under certain conditions, the reaction may proceed in a non-trivial autowave-like regime.     

Automatic determination of reaction mappings and reaction center information. 1. The imaginary transition state energy approach

Chemical reactions transform the reactant molecules by deleting existing and forming new bonds. The identification of these so-called reacting bonds is important for studying the reaction mechanism and for applications in metabolomics, e.g. for interpreting substrate labeling experiments. Here, we introduce an approach which suggests the simplest possible reaction center at the heavy atom level, with high accuracy. In contrast to current methods the approach is motivated by a simple theoretical model based on a crude approximation of the reaction energetics, and takes the complete reacting system into account. Finally, it recovers all optimal solutions to the problem while removing all symmetry-related, redundant solutions. We apply the method on the complete KEGG database of biochemical reactions, and compare our approach with previous methods. The resulting reaction centers are represented as imaginary transition states, which are molecule-like representations of reaction mechanisms. We provide the statistics of the calculations on the KEGG database and discuss some examples for the different types of alternative solutions found.     

High performance liquid chromatography study on the kinetics and mechanism of chlorite-thiosulfate reaction in slightly alkaline medium

Chlorite-thiosulfate reaction was studied by high performance liquid chromatography under slightly alkaline solution by monitoring the concentration of thiosulfate and tetrathionate simultaneously during the course of reaction. It is demonstrated that various polythionates are formed and the composition of polythionates mainly depends on pH. Initial rate studies have revealed that the formal kinetic order of hydrogen ion is unambiguously unity but that of chlorite ion is significantly larger, while that of thiosulfate is lower than one. A 10-step kinetic model is proposed with seven fitted and three fixed parameters by simultaneous evaluation of kinetic data taking all the important characteristics of the measured kinetic curves into account. It is also enlightened that higher formal kinetic order of chlorite and lower kinetic order of thiosulfate than unity is an inherent feature of the system and may explain the systematic deviation between the measured and the calculated data encountered in previous studies.     

A possible construction of a complex chemical reaction network

A procedure is suggested for the construction of chemical reaction networks. We define the kinetic communication as a transfer of atoms or atomic groups between two species and determine all the kinetic communications occurring in the possible mechanism of a complex chemical process. The set of kinetic communications is the basis of the communication matrices resulting in the complete network of the overall reaction.Limiting the consideration for certain types of kinetic communications we obtain the reaction subnetworks and selecting arbitrarily species among those participating in the possible mechanism we introduced the concept of the partial subnetworks which correspond to subsets of the complete network.By the simple analysis of the subnetworks it is easy to obtain the sequence network indicating the pathways via which the selected species are formed in the course of the overall process, by the transfer of chosen atoms or atomic groups.     

Artificial-intelligence-based interpretation of feature sensitivities of the Belousov-Zhabotinsky reaction

A new approach is presented for analyzing kinetic models of relaxation-type oscillatory systems on the basis of numerical data. Feature sensitivities of the length of the two kinetic states of the Belousov-Zhabotinsky (BZ) reaction with respect to the rate constants of the model are explained by means of a logic-based inference system. The main kinetic roles of the individual reaction steps on the relaxing components are revealed, and a consistent interpretation of the kinetic states is given by this process. Both the high and the low set of rate constants were studied. According to our analysis, the bromous acid-hypobromous acid reaction is an important Br^? producing step of the model, and in the case of the low set, the bromate-bromous acid reaction is not the rate-determining step of the bromous acid autocatalysis.     

Reaction of water soluble polymers with oxidising agents: reaction of dextran with tetravalent cerium

Dextran, an extracellular bacterial polysaccharide, was subjected to reaction with ceric ammonium nitrate in aqueous nitric acid at varying temperatures. The polymer has been found to be degraded due to the selective oxidative cleavage of vicinal glycol units present in the monosaccharide unit of each chain. The aldehyde groups produced upon cleavage at low temperature were found to undergo further oxidation to acids and formic acid with rise in temperature of the reaction. The course of the reaction has been followed by cerimetry and by spectrophotometrical measurements. The effect of the concentration of reacting components on the reaction has been studied and various kinetic aspects have been evaluated. Depending on the kinetic results, a plausible reaction mechanism for the oxidative degradation and the subsequent reactions have been suggested by the study of the changes of solution viscosity and initiation of graft copolymerization of vinyl monomers by Ce(IV)/dextran mixture. Various thermodynamic parameters have been evaluated.     

Investigation of the rh-catalyzed asymmetric reductive aldol reaction. Expanded scope based on reaction analysis

[reaction: see text] A series of experiments are described that suggest that the Rh-catalyzed reductive aldol reaction proceeds by addition of a Rh(I) hydride, generated in situ, to the reacting acrylate followed by a stereochemistry-controlling aldol addition reaction. On the basis of this hypothesis, reaction conditions are engineered that allow for increased substrate scope.     

Mechanistic investigations on the heterogeneous solid-state reaction of magnesium amides and lithium hydrides

Isothermal and non-isothermal kinetic measurements on the chemical reaction between Mg(NH2)(2) and LiH, as well as the thermal decomposition of Mg(NH(2))(2), give apparent activation energies of 88.1 and 130 kJ/mol, respectively, which reveal that the thermal decomposition of Mg(NH2)(2) is unlikely to be an elementary step in the chemical reaction of Mg(NH2)(2) and 2LiH. The H-D exchange between H(delta+) in Mg(NH2)(2) and D(delta-) in LiD gives evidence for the coordinated interaction between amide and hydride. The observed linear and nonlinear kinetic growth in the reaction of Mg(NH2)(2)-2LiH indicates that the reaction rate is controlled by the interface reaction in the early stage of the reaction and by mass transport through the imide layer in the later stage. Both particle size and degree of mixing of the reacting species affect the overall kinetics of the reactions.     

Extent-based kinetic identification using spectroscopic measurements and multivariate calibration

Extent-based kinetic identification is a kinetic modeling technique that uses concentration measurements to compute extents and identify reaction kinetics by the integral method of parameter estimation. This article considers the case where spectroscopic data are used together with a calibration model to predict concentrations. The calibration set is assumed to be constructed from reacting data that include pairs of concentration and spectral data. Alternatively, one can use the concentration- and spectral contributions of the reactions and mass transfers, which are obtained by pretreatment in reaction- and mass-transfer-variant form. The extent-based kinetic identification using concentrations predicted from spectroscopic data is illustrated through the simulation of both a homogeneous and a gas–liquid reaction system.     

Cholesterol study: Reaction plateau and kinetic determinations

A study has been described of a comparison between reaction plateaus and kinetic modes for measuring cholesterol. A similar investigation of bilirubin reactions under the same procedural conditions was also carried out because this compound is a major interference which is frequently encountered in abnormal serums. The findings indicate that bilirubin is a more sensitive reactant than cholesterol by LB reaction but that its effect as an interference can be lessened by a kinetic approach providing that the effect of H₂O on reaction velocity and molar absorptivity can be minimized. An iron reaction even though more sensitive proved less workable in the kinetic mode owing to reaction velocity and the presence of air bubbles. However, its reaction plateau characteristics were superior to the LB reaction because of a favorable ratio of colors generated for the two reacting constituents. Based on this study, it is predictable that a kinetic approach is quite workable for the LB reaction and could be made more workable for the iron reaction if, in the latter case, conditions perhaps such as temperature and reaction media, could be altered to slow the rate of color formation.     

Mass spectrometric synthesis. 1—the reaction of catechol with 2,4-dimethyl-2,3-pentadiene

The reaction of catechol with 2,4-dimethyl-2,3-pentadiene, carried out in the chemical ionization chamber of a VG ZAB2F mass spectrometer, has been studied with respect to the partial pressure of the reacting species. The structure of the reaction product, 2,2-diisopropyl-1,3-benzodioxole, has been proved by exact mass measurements, B/E linked scans, labelling experiments and collisionally activated dissociation mass analysed ion kinetic energy spectra.     

Kinetics and mechanism of NO production in the Ru(III)-(edta) mediated oxidation of L-arginine with H(2)O(2)

The kinetics of the Ru(III)-(edta) (edta(4-) = ethylenediaminetetraacetate) catalyzed oxidation of l-arginine by H(2)O(2) mimicking the action of nitric oxide synthases (NOSs) has been studied spectrophotometrically. The time course of the reaction of [Ru(V)(edta)O](-) with l-arginine was followed at 390 nm under catalytic turn-over conditions. Formation of NO in the reacting system has been confirmed with an isolated nitric oxide free radical analyzer. A detailed reaction mechanism in agreement with the spectral and kinetic data is presented.     

Blends of bisphenol a polycarbonate and acrylic polymers. I. A chemical reaction mechanism

The chemical reaction at high temperature (above 200°C) between PC and PMMA has been very recently highlighted. However, no clear reaction mechanism has been proposed to explain this phenomenon. We suggest a reaction mechanism following two steps. The first step consists of hydrolysis of the ester bonds of the PMMA leading to acid pendant groups. These acids can then either ring close into glutaric anhydride, or acidolyze the carbonate bonds of PC during the second step. At the same time, benzoic acid produced by PC degradation could further react with PMMA or acidolyze the carbonate groups leading to the crosslinking of the system. A satisfactory contact between the reacting units is a key point in the proces. Significant amounts of PC-PMMA copolymer are obtained when the reaction is performed from a miscible system. On the contrary, no reaction occurs during melt mixing. Understanding the process enables us to specify the conditions, in which no chemical reaction takes place. In nonreactive conditions, PC/PMMA blends remain immiscible for several hours at 300°C. The thermodynamic UCST proposed in the literature is just an artifact due to the occurrence of the chemical reaction. © 1995 John Wiley & Sons, Inc.     

己烷临氢异构化的复杂反应动力学网络

应用连续微反-色谱装置, 在反应温度为210-260℃, 反应压力为1.96MPa,H~2/乙烷摩尔比为8的条件下, 研究了己烷的五个异构体在载钯氢型丝光沸石催化剂上的临氢异构化反应动力学。结果表明, 在总压和H~2/己烷摩尔比恒定条件下,己烷的异构化动力学行为可以用拟一级复杂反应网络来描述。求取了该复杂反应网络中每一步异构化反应的速率常数, 各步反应的活化能在88.2-228kJ·mol^-^1之间。     

Kinetic and chemometric studies of the determination of creatinine using the Jaffé reaction. Part I. Kinetics of the reaction: analytical conclusions

A kinetic-spectrophotometric study of the Jaffé reaction was carried out and the kinetic behaviour, calibration step and interfering effect of albumin on creatinine standard solutions were studied. It was concluded that there is a variation in the kinetic behaviour of the system when higher concentrations of creatinine, picrate or sodium hydroxide are tested. The experimental conditions for quantifying creatinine must be chosen so that the kinetic behaviour is the same in the dynamic concentration range. Changes in the absorbance (delta A) versus concentration equations were chosen as the most suitable for calibration graphs. It was also shown that creatinine results will have a proportional bias error if the interfering effect of albumin is not taken into consideration.     

一种活性磷酸酯的分子内亲核取代反应动力学研究

合成和表征了大环过渡金属配合物NiL(L:高氯酸-5,7,7,12,14,14-六甲基-1,4,8,11-四氮杂环十四烷)。配合物NiL与表面活性剂组成的金属胶束作为模拟水解金属酶用于催化BNPP水解。提出了BNPP催化水解的机理;建立了用于计算动力学常数的动力学模型;计算了相关的动力学和热力学常数。结果表明,这种金属胶束表现出较高的催化活性;BNPP催化水解反应是分子内亲核取代反应;所提出的机理和建立的动力学模型是合理的。