Adsorption of uranyl species onto the rutile (110) surface: a periodic DFT study

To model the structures of dissolved uranium contaminants adsorbed on mineral surfaces and further understand their interaction with geological surfaces in nature, we have performed periodic density funtional theory (DFT) calculations on the sorption of uranyl species onto the TiO₂ rutile (110) surface. Two kinds of surfaces, an ideal dry surface and a partially hydrated surface, were considered in this study. The uranyl dication was simulated as penta‐ or hexa‐coordinated in the equatorial plane. Two bonds are contributed by surface bridging oxygen atoms and the remaining equatorial coordination is satisfied by H₂O, OH^?, and CO₃^2? ligands; this is known to be the most stable sorption structure. Experimental structural parameters of the surface–[UO₂(H₂O)₃]²⁺ system were well reproduced by our calculations. With respect to adsorbates, [UO₂(L1)_x(L2)_y(L3)_z]ⁿ (L1=H₂O, L2=OH^?, L3=CO₃^2?, x≤3, y≤3, z≤2, x+y+2z≤4), on the ideal surface, the variation of ligands from H₂O to OH^? and CO₃^2? lengthens the U? O_surf and U? Ti distances. As a result, the uranyl–surface interaction decreases, as is evident from the calculated sorption energies. Our calculations support the experimental observation that the sorptive capacity of TiO₂ decreases in the presence of carbonate ions. The stronger equatorial hydroxide and carbonate ligands around uranyl also result in U?O distances that are longer than those of aquouranyl species by 0.1–0.3 Å. Compared with the ideal surface, the hydrated surface introduces greater hydrogen bonding. This results in longer U?O bond lengths, shorter uranyl–surface separations in most cases, and stronger sorption interactions.     

Adsorption of a single polymer chain on a surface: A molecular dynamics simulation study

We performed simulations of the physical adsorption of a single globular chain on a surface of hemispherical shape by means of molecular dynamics simulations. For the chain, we took advantage of a united atom model. Interactions within the chain were limited to stretching, bending, and torsional as well as nonbonded interactions between the nonadjacent atoms. The interaction between each chain element and the surface formation are reigned by a Lennard–Jones potential. In this article, we focused on differences in the behavior of the adsorbed globule to the free unadsorbed one particularly in two different zones of the immediate vicinity of the surface. There were strong indications for a localized acceleration of the dynamics as compared with the bulk that appears in an increase of trans–gauche switches. For explanation we came up with an adsorption scenario. Special attention was given to the shift of the percentage of trans and gauche conformations within the globule in dependence on the strength of the adsorption potential that might be related to crystallization or glass transition. © 2001 John Wiley & Sons, Inc. J Polym Sci Part B: Polym Phys 39: 2333–2339, 2001     

碘和氧修饰银(110)表面对甲醇吸附的影响: 密度 泛函理论的计算研究

用密度泛函理论(DFT)的B3-LYP方法和原子簇模型研究了碘和修饰银(110)表面对甲醇吸附的影响。结果表明,甲醇分子在干净的银表面吸附很弱甚至不吸附,但在氧或碘修饰过的银表面上,由于预吸附导致吸附能的增加而变得容易吸附。并进一步采用目前较新的映像电荷模型计算验证了在甲醇部分氧化制甲醛反应中氧或碘对银催化剂表面修饰的本质是电荷修饰这一推论,为实验中如何筛选修饰提供了良好的判据。     

Cysteine adsorption on the Au(111) surface and the electron transfer in configuration of a scanning tunneling microscope: A quantum-chemical approach

Adsorption of two forms, molecule and radical, of amino acid L-cysteine (Cys) on the Au₁₂ cluster that simulates the (111) face of single-crystal gold is studied in the framework of the density functional theory. Effects of solvation of adsorbed Cys particles and lateral interaction in a monolayer are analyzed. The simulation predicts a commensurate adsorption energetics of the molecule and radical, with a difference between the “on-top,” “hollow,” and “bridge” positions. An analysis of lateral electrostatic interactions points to the stability of a cluster comprising six Cys particles, which conforms to the size of a fragment observed experimentally. Adsorption calculations are used to build three-dimensional isosurfaces (STM images), where the tungsten needle of the scanning tunneling microscope is simulated by a tungsten atom or by small clusters. The calculated images are sensitive to both the Cys shape and the orientation of adsorbed Cys particles. Calculation results are compared with fresh in situ submolecular-resolution STM data. Simulated images (with commensurate contributions made by sulfur atom and amino group) built for Cys radical adsorbed in the “on-top” position give best conformance to experiment.     

Adsorption of organic substances on broken clay surfaces: a quantum chemical study

Hydrogen-bonded interactions between local defect structures on broken clay surfaces modeled as molecular clusters and the organic molecules acetic acid, acetate, and N-methylacetamide (NMA) have been investigated. Density functional theory and polarized basis sets have been used for the computation of optimized interaction complexes and formation energies. The activity of the defect structures has been characterized as physical or chemical in terms of the strength of the hydrogen bonds formed. Chemical defects lead to significantly enhanced interactions with stronger hydrogen bonds and larger elongation of OH bonds in comparison to the physical defects. The type of interaction with the defect structure significantly influences the planarity of the model peptide bond in NMA. Both cases, enhancement of the planarity by increase of the CN double bond character and strong deviations from planarity, are observed.     

Pt adsorption on the PbTiO3(110) polar surface: a density functional theory study

The monolayer (ML) and submonolayer Pt on both terminations of PbTiO₃(110) polar surface have been studied by using density functional theory (DFT) with projector‐augmented wave(PAW) potential and a supercell approach. The most favored ML Pt arrangements on PbTiO and O₂ terminations are the hollow site and the short‐bridge site, respectively. By examining the geometries of different ML arrangements, we know that the dominant impetus for stability of the favored adsorption site for PbTiO termination is the Pt–Ti interaction (mainly from covalent bonding), while that for O₂ termination is the Pt–O interaction (mainly from ionic bonding). In addition, the appearance of the gap electronic states in the outermost layers of each termination indicates that a channel for charge transfer between adsorbed layer and substrate is formed. Moreover, the interface hybridization between Pt 5d and O 2p orbitals is also observed, especially for ML Pt on O₂ termination. The stability sequences for various arrangements of 1/2 ML Pt adsorption conform well with those of ML Pt adsorption, and the most stable arrangement is energetically more favorable than the corresponding ML coverage in the view of adsorption energy maximization. The behavior, i.e. the increase in adsorption energy with decrease in coverage, indicates that Pt? Pt interactions weaken those between Pt and the substrate. Copyright © 2009 John Wiley & Sons, Ltd.     

The influence of promoters and poisons on carbon monoxide adsorption on Rh(100): a DFT study.

Density functional theory calculations were performed to determine the pairwise lateral interaction energies between carbon monoxide and coadsorbed elements from the first three rows of the periodic table on a Rh(100) surface. The atoms were placed in a c(2x2) arrangement of fourfold hollow sites and the carbon monoxide probe molecule in a p(2x2) arrangement, so that each CO molecule had four atoms as nearest neighbours. The alkali atoms show an attractive interaction with CO while the other atoms show a repulsive interaction. For second-row elements the maximum repulsion is at nitrogen and for third-row elements at sulphur. Attempts to correlate the interaction energies with properties of the system, such as electronegativity, distances, or change in work function, failed, which implies that each combination of adsorbates needs to be calculated separately.     

Diels-Alder addition of some 6-and 5-member ring aromatic compounds on the Si(001)-2×1 surface: dependence of the binding energy on the resonance energy of the aromatic compounds

An energy decomposition scheme is proposed for understanding of the relative low binding energy of the [4+2] cycloaddition of benzene on the Si(001)-2×1 surface. By means of density functional cluster model calculations, this scheme is demonstrated to be applicable to some other 6- and 5-member ring aromatic compounds, giving a trend that the binding energy of the [4+2] cycloaddition products of those aromatic compounds on the Si(001) surface depends strongly on their resonance energy.     

Adsorption of water vapor on a non-porous carbon surface and evaluation of the mesopore surfaces of active carbons

Adsorption of water vapor on non-porous carbon adsorbents (blacks) with different specific surfaces and a sufficiently high concentration of primary centers was studied. The maximum value of the adsorption is proportional to the surface and corresponds to the formation of (1.7±0.3) dense monomolecular layers. A method was proposed for determining the surface of non-porous carbon adsorbents and for evaluating the mesopore surfaces of active carbons.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2048–2051, December, 1993.This work was supported by the Russian Foundation for Basic Research (Grant 93-035635).     

Effect of surface orientation on the segregation kinetics of Sb from a Cu single crystal

In a previous theoretical study it has been suggested that the bulk vacancy formation energy near a surface depends on the orientation of the surface. It has been suggested also that this dependency of the vacancy formation energy would influence the bulk diffusion coefficient near the surface. The experimental results presented in this paper support this hypothesis. The experimental results were obtained by measuring the bulk‐to‐surface segregation of Sb for a Cu(111) single crystal with 0.088 at.% Sb and for a Cu(110) single crystal with 0.082 at.% Sb. The experimental results were fitted with the vacancy‐modified Darken model and it was clear that the bulk diffusion coefficient beneath the (110) surface is higher than the bulk diffusion coefficient beneath the (111) surface. Copyright © 2003 John Wiley & Sons, Ltd.     

Properties of alkali metal atoms deposited on a MgO surface: a systematic experimental and theoretical study

The adsorption of small amounts of alkali metal atoms (Li, Na, K, Rb, and Cs) on the surface of MgO powders and thin films has been studied by means of EPR spectroscopy and DFT calculations. From a comparison of the measured and computed g values and hyperfine coupling constants (hfccs), a tentative assignment of the preferred adsorption sites is proposed. All atoms bind preferentially to surface oxide anions, but the location of these anions differs as a function of the deposition temperature and alkali metal. Lithium forms relatively strong bonds with MgO and can be stabilized at low temperatures on terrace sites. Potassium interacts very weakly with MgO and is stabilized only at specific sites, such as at reverse corners where it can interact simultaneously with three surface oxygen atoms (rubidium and cesium presumably behave in the same way). Sodium forms bonds of intermediate strength and could, in principle, populate more than a single site when deposited at room temperature. In all cases, large deviations of the hfccs from the gas-phase values are observed. These reductions in the hfccs are due to polarization effects and are not connected to ionization of the alkali metal, which would lead to the formation of an adsorbed cation and a trapped electron. In this respect, hydrogen atoms behave completely differently. Under similar conditions, they form (H(+))(e(-)) pairs. The reasons for this different behavior are discussed.     

钙元素对焦炭表面NO吸附行为的影响:密度泛函理论研究

采用密度泛函理论研究了Ca元素对焦炭表面NO吸附行为的影响。使用周期性石墨烯模型近似模拟实际焦炭表面的石墨化结构,并在石墨烯表面装饰Ca原子(按质量计Ca原子覆盖率为13.3%),考察了Ca元素对焦炭表面NO吸附的催化作用。计算结果表明,NO分子在纯净石墨烯表面的吸附属于物理吸附,结合能仅为-19.34 kJ/mol;石墨烯表面掺入Ca原子后,由于Ca原子4s轨道和3d轨道的电子转移到NO分子,结合能显著提高至-206.02 kJ/mol。     

Adsorption of solvent and oxidant molecules on magnesium surface: effect on the electronic structure and reactivity of magnesium in reactions of Grignard reagent formation

The effect of adsorption of the oxidant (EtBr) and aprotic dipolar solvent molecules on the electronic structure and properties of Mg _n (n ≤ 50) clusters simulating the surface of metallic magnesium was studied by the B3PW91/6-31G(d) density functional method. It was found that the work function of an electron from the cluster monotonically decreases as the donor ability of the adsorbed molecules increases. The experimentally measured rate of the magnesium oxidation by EtBr correlates with the negative Mulliken charge density of the first coordination sphere of the surface adsorption site. The results obtained are in agreement with the experimentally determined work function of electron from metals during adsorption from the gas phase. Presumably, the rate-limiting step of the Grignard reagent formation is the surface oxidation reaction. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 458–469, March, 2008.     

硫醇保护金团簇的实验和理论研究现状

硫醇保护的金团簇(Au_m(SR)_n,m和n为Au和SR的数目)由于其特殊的光学、电学性质以及特别的物理/化学性质,在纳米催化、生物医学和光学设备中具有潜在的应用价值。Au₁₀₂(SR)₅₄和Au₂₅(SR)₁₈^-团簇单晶结构的确定是Au_m(SR)_n团簇合成的两大突破,它们的结构揭示了Au_m(SR)_n团簇中Au-S键新的成键特征和新的原子堆积方式。本文总结了Au_m(SR)_n团簇实验合成单晶结构的研究成果,概述了有谱图无单晶结构的Au_m(SR)_n团簇的实验进展,介绍了密度泛函理论预测Au_m(SR)_n团簇的研究概况,并结合本课题组的研究课题归纳了解释团簇稳定性和化学成键方式的超原子复合物模型,超原子网络模型和超级共价键模型及其应用。最后,对Au_m(SR)_n团簇的研究趋势进行了展望。     

A DFT study of the adsorption and dissociation of CO on Fe(100): influence of surface coverage on the nature of accessible adsorption states.

In the present article, we report adsorption energies, structures, and vibrational frequencies of CO on Fe(100) for several adsorption states and at three surface coverages. We have performed a full analysis of the vibrational frequencies of CO, thus determining what structures are stable adsorption states and characterizing the transition-state structure for CO dissociation. We have calculated the activation energy of dissociation of CO at 0.25 ML (ML = monolayers) as well as at 0.5 ML; we have studied the dissociation at 0.5 ML to quantify the destabilization effect on the CO(alpha3) molecules when a neighboring CO molecule dissociates. In addition, it is shown that the number and nature of likely adsorption states is coverage dependent. Evidence is presented that shows that the CO molecule adsorbs on Fe(100) at fourfold hollow sites with the molecular axis tilted away from the surface normal by 51.0 degrees. The asorprton energy of the CO molecule is -2.54 eV and the C-O stretching frequency is 1156 cm(-1). This adsorption state corresponds to the alpha3 molecular desorption state reported in temperature programmed desorption (TPD) experiments. However, the activation energy of dissociation of CO(alpha3) molecules at 0.25 ML is only 1.11 eV (approximately 25.60 kcal mol(-1)) and the gain in energy is -1.17 eV; thus, the dissociation of CO is largely favored at low coverages. The activation energy of dissociation of CO at 0.5 ML is 1.18 eV (approximately 27.21 kcal mol(-1)), very similar to that calculated at 0.25 ML. However, the dissociation reaction at 0.5 ML is slightly endothermic, with a total change in energy of 0.10 eV Consequently, molecular adsorption is stabilized with respect to CO dissociation when the CO coverage is increased from 0.25 to 0.5 ML.     

Effects of coverage and solvent on H2S adsorption on the Cu(100) surface: A DFT study

Density functional theory is used to investigate the effects of coverage and solvent on the adsorption of H₂S on the Cu(100) surface. In this work, the adsorption energies, structural parameters and Mulliken charges of the adsorbed H₂S are calculated. The results show that when the coverage of H₂S is high (1 ML), H₂S molecule cannot adsorb on the Cu(100) surface spontaneously, and the decomposition of H₂S preferentially occurs at the bridge site. When the coverage decreases to 1/4 ML coverage, H₂S molecule does not exhibit the decomposition, but bonds to the top Cu atom with the tilted adsorption. Furthermore, when the coverage is 1/9, 1/16 and 1/25 ML, H₂S adsorption remains stable. In addition, the stability of H₂S adsorption on the Cu(100) surface improves rapidly when the solvent dielectric constant (ε) increases from 1 to 12.3 corresponding to the vacuum and pyridine, respectively. For the higher ε (≥24.3), the effect of the solvent on the H₂S adsorption was greatly reduced. In this work, both coverage and solvent are shown to have an important effect on the H₂S adsorption on the Cu(100) surface, which might be useful to improve the future similar simulations. Copyright © 2015 John Wiley & Sons, Ltd.     

Synthesis,crystal structure and silver complexation of a novel saddle-shaped stilbenophane: NMR and theoretical study on the complex

A new Z,Z-stilbenophane was synthesised and characterised. According to an X-ray structure analysis, the structure has a saddle shape, with the π-electrons of the double bonds and the oxygen atoms pointing towards the centre of a cavity. The ligand forms a 1:1 complex with Ag⁺. Both NMR spectra and theoretical analysis (Gauge-independent atomic orbitals (GIAO) and Quantum theory of atoms in molecules (QTAIM)) suggest that the silver cation is bound within the molecular cavity. The metal is coordinated by the two olefinic double bonds and the four oxygen atoms in an approximately octahedral environment. The coordination motif is unusual because the soft silver cation prefers the interaction with the four hard oxygen atoms over the bonding to the arene units, which is frequently observed in Ag⁺ arene complexes.     

Mo/Fe3O4(111)表面对燃煤烟气汞吸附的密度泛函研究

利用CASTEP软件包采用密度泛函理论计算研究了过渡金属Mo掺杂Fe_3O_4(111)Fe_(tet)表面对Hg~0、HgCl和HgCl_2的吸附特征,分析了Mo掺杂前后Fe_3O_4(111)Fe_(tet)表面上不同汞物种的吸附形态。结果表明,Mo掺杂Fe_3O_4(111)Fe_(tet)表面对HgCl和HgCl_2为化学吸附,而对Hg~0的吸附为物理吸附;与纯净表面相比,HgCl在Mo原子掺杂表面上的吸附能提高了40%-66%。HgCl_2在纯净Fe_3O_4(111)Fe_(tet)表面形成"M"形结构;而掺杂Mo原子后,由于Cl原子与Mo原子之间更强的相互作用,使得HgCl_2发生了完全解离,两个Cl原子分别与Mo原子和Fe原子成键吸附在表面,Hg脱附。相关研究结果可为脱除燃煤烟气中的汞提供一定的理论指导。     

Effect of ZrS2 load single/dual-atom catalysts on the hydrogen evolution reaction: A first-principles study

The hydrogen evolution effect of ZrS₂ carrier loaded with transition metal single-atom (SA) was explored by first-principles method. ZrS₂ was constructed with transition metal single-atom and dual-atom. The structure–activity relationship of supported single-atom catalysts was described by electronic properties and hydrogen evolution kinetics. The results show that the ZrS₂ carrier-loaded atomic-level catalysts are more likely to occur in acidic environments, where the Mo SA load has a higher hydrogen precipitation capacity than the Pt SA. In the case of dual-atom adsorption, most of the hydrogen reduction processes are higher than that of single atom loading, which indicates that the outer orbital hybridization is more likely to lead to the interfacial charge recombination of the catalyst. Thereinto, Ni/Pt @ZrS₂ has the lowest Gibbs free energy (0.08 eV), and the synergistic effect of transition metals induces the deviation of the center of the d-band from the Fermi level and improves the dissociation ability of H ions. The design provides a new catalytic model for the HER and provides some ideas for understanding the two-site catalysis.