Adsorption of Acetate on Au(111): An in-situ Scanning Tunnelling Microscopy Study and Implications on Formic Acid Electrooxidation

The adsorption of acetate on an Au(111) electrode surface in contact with acetic acid at pH 2.7 was imaged in-situ using scanning tunnelling microscopy (STM). Two different ordered structures were imaged for acetate adsorbed in the bidentate configuration on the unreconstructed surface at 0.95 V (vs. the saturated calomel electrode, SCE). The first structure, , is metastable and transforms at constant potential within 20 minutes to a structure, which is thermodynamically more favourable. The acetate adlayer starts to form at step edges and propagates via nucleation and growth onto terraces. The findings from in-situ STM are in agreement with the electrochemical behaviour of acetate on Au(111) characterized by voltammetry. A comparison is made with formate adsorption on Au(111). While acetate is not reactive, in contrast to formate, it can act as a spectator species in formic acid electrooxidation.     

Voltammetric Behaviour of LMO at the Nanoscale: A Map of Reversibility and Diffusional Limitations

Understanding and optimizing single particle rate behaviour is normally challenging in composite commercial lithium-ion electrode materials. In this regard, recent experimental research has addressed the electrochemical Li-ion intercalation in individual nanosized particles. Here, we present a thorough theoretical analysis of the Li⁺ intercalation voltammetric behaviour in single nano/micro-scale LiMn₂O₄ (LMO) particles, incorporating realistic interactions between inserted ions. A transparent 2-dimensional zone diagram representation of kinetic-diffusional behaviour is provided that allows rapid diagnosis of the reversibility and diffusion length of the system depending on the particle geometry. We provide an Excel file where the boundary lines of the zone diagram can be rapidly recalculated by setting input values of the rate constant, and diffusion coefficient, . The model framework elucidates the heterogeneous behaviour of nanosized particles with similar sizes but different shapes. Hence, we present here an outlook for realistic multiscale modelling of real materials.     

In situ friction study of Ag Underpotential deposition (UPD) on Au(111) in aqueous electrolyte

The electrodeposition of silver on Au(111) was investigated using lateral force microscopy (LFM) in Ag⁺ containing sulfuric acid. Friction force images show that adsorbed sulfate forms structure ( on Au(111) prior to Ag underpotential deposition (UPD) and structure ( ) on a complete monolayer or bilayer of Ag. Variation of friction with normal load shows a non-monotonous dependence, which is caused by increasing penetration of the tip into the sulfate adlayer. In addition, the friction force is influenced by the varying coverage and mobility of Ag atoms on the surface. Before Ag coverage reaches the critical value, the deposited silver atoms may be mobile enough to be dragged by the movement of AFM tip. Possible penetration of the tip into the UPD layer at very high loads is discussed as a model for self-healing wear. However, when the coverage of Ag is close to 1, the deposited Ag atoms are tight enough to resist the influence of the AFM tip and the tip penetrates only into the sulfate adlayer.     

Potential of AMnO3 (A=Ca,Sr, Ba,La) as Active Layer in Inorganic Perovskite Solar Cells

Inorganic perovskite CaMnO was proposed as a substitution for the TiO anatase in electron transport layers of solar cells containing the hybrid perovskite CH NH PbI based on increased mobility of electrons and better optical matching. Due to a suitable band gap concerning the absorption of sunlight, we investigate the potential of CaMnO and similar manganite perovskites, where Ca is replaced by either Sr, Ba or La, as an absorber layer in inorganic perovskite solar cells. In this study, we have used optical measurements on the synthesized AMnO (A=Ca, Sr, Ba, La) samples to aid density functional theory calculations (DFT) in order to accurately simulate the electronic and optical properties of AMnO compounds and gauge their potential for the role of absorber layer. Both experimental measurements and theoretical calculations show suitable band gap of 1.1-1.5 eV, depending on the compound, and absorption coefficients of the order of cm in the visible part of the spectrum.     

Lattice Thermal Transport in the Homogeneous Cage-Like Compounds Cu3VSe4 and Cu3NbSe4: Interplay between Phonon-Phase Space,Anharmonicity, and Atomic Mass

Understanding the correlation between crystal structure and thermal conductivity in semiconductors is very important for designing heat-transport-related devices, such as high-performance thermoelectric materials and heat dissipation in micro-nano-scale devices. In this work, the lattice thermal conductivity ( ) of the cage-like compounds Cu₃VSe₄ and Cu₃NbSe₄ was investigated by experimental measurements and first-principles calculations. The experimental of Cu₃NbSe₄ is approximately 25 % lower than that of Cu₃VSe₄ at 300 K. The relevant important physical parameters, including the sound velocity, heat capacity, weighted phonon phase space (W), and third-order force constants along with atomic mass were theoretically analyzed. It is found that W is the dominant parameter in determining the , and the other factors only play a minor role. The physical origin is the relatively “soft” lattice of Cu₃NbSe₄ with heavier atomic mass. This research provides deep insight into the correlation between the thermal conductivity and crystal structure and paves the way for discovering high-performance thermal management device and thermoelectric materials with intrinsically low .     

Hydroxylamine Oxidation on Polycrystalline Gold Electrodes in Aqueous Electrolytes: Quantitative On-Line Mass Spectrometry under Forced Convection

Herein, a method is presented that allows quantitative determination of faradaic efficiencies for dinitrogen (N₂) generation during the electrochemical oxidation of hydroxylamine (NH₂OH), , on a polycrystalline gold Au(poly) disk electrode in aqueous electrolytes over a wide pH range. This tactic involves the use of an impinging jet electrolyte configuration incorporating a gas porous ring connected in turn to a mass spectrometer. The actual amount of N₂ generated at the Au(poly) disk was assayed using the oxidation of hydrazine (N₂H₄) in aqueous phosphate buffer (pH 7). This redox process yields N₂ as the only product, allowing a direct correlation to be established between the changes in the partial pressures of N₂ and the current flowing through the disk electrode. An analysis of the data collected revealed a strong dependence of both on pH and the applied potential. Although values of as high as 20 to 30 % were found in acid and neutral media over a narrow potential region, those in alkaline solution were far smaller in the entire potential range examined.     

Atomic-Scale Studies of Fe3O4(001) and TiO2(110) Surfaces Following Immersion in CO2-Acidified Water

Difficulties associated with the integration of liquids into a UHV environment make surface-science style studies of mineral dissolution particularly challenging. Recently, we developed a novel experimental setup for the UHV-compatible dosing of ultrapure liquid water and studied its interaction with TiO₂ and Fe₃O₄ surfaces. Herein, we describe a simple approach to vary the pH through the partial pressure of CO₂ ( ) in the surrounding vacuum chamber and use this to study how these surfaces react to an acidic solution. The TiO₂(110) surface is unaffected by the acidic solution, except for a small amount of carbonaceous contamination. The Fe₃O₄(001)-( × )R45° surface begins to dissolve at a pH 4.0–3.9 ( =0.8–1 bar) and, although it is significantly roughened, the atomic-scale structure of the Fe₃O₄(001) surface layer remains visible in scanning tunneling microscopy (STM) images. X-ray photoelectron spectroscopy (XPS) reveals that the surface is chemically reduced and contains a significant accumulation of bicarbonate (HCO₃⁻) species. These observations are consistent with Fe(II) being extracted by bicarbonate ions, leading to dissolved iron bicarbonate complexes (Fe(HCO₃)₂), which precipitate onto the surface when the water evaporates.     

The role of dimers in complex forming reactions at low temperature: full dimension potential and dynamics of (H2CO)2+OH reaction

The (H CO) +OH and H CO-OH+H CO reaction dynamics are studied theoretically for temperatures below 300 K. For this purpose, a full dimension potential energy surface is built, which reproduces well accurate ab initio calculations. The potential presents a submerged reaction barrier, as an example of the catalytic effect induced by the presence of the third molecule. However, quasi-classical and ring polymer molecular dynamics calculations show that the dominant channel is the dimer-exchange mechanism below 200 K, and that the reactive rate constant tends to stabilize at low temperatures, because the effective dipole of either dimer is reduced with respect to that of formaldehyde alone. The reaction complex formed at low temperatures does not live long enough to produce complete energy relaxation, as assumed in statistical theories. These results show that the reactivity of the dimers cannot explain the large rate constants measured at temperatures below 100 K.     

An Insight into nd10 Metal Cyanide-based Coordination Polymers Through ab-initio Calculations: Electronic Properties and Optical Response

Semiconductors are essential for modern life since they are the basis of many current technologies that are related to better living standards. Some of them, characterized by the periodic assembling of metal cyanides with filled d-shell (nd¹⁰) constitute an interesting series of cyanide-based coordination polymers with physical properties such like anomalous anisotropic thermal expansion and quantum confinement effects related to the polymer's width that can be exploited for technological applications. Herein, the electronic structure of nd¹⁰ metal cyanide-based systems were studied both experimentally and through Density Functional Theory. The band gap found for one-dimensional (1D) −M−C≡N− (M=Cu, Ag, Au) and tetrahedral M−(C≡N)₂ (M=Zn, Cd, Hg) systems can be attributed to Laporte-allowed π π* (Metal to Ligand Charge Transfer mechanism) combined with metal center (d s,p) electronic transitions. Aurophilic bonding was found on the AuCN structure, and a new forbidden electronic transition associated to its band gap is reported. Computed effective and reduced masses from carriers revealed that carrier mobility and quantum confinement effects are greater in 1D systems.     

Cover Feature: How Different are the Diamagnetic and Paramagnetic Contributions to Off-Nucleus Shielding in Aromatic and Antiaromatic Rings? (ChemPhysChem 9/2023)

The spatial variations in the diamagnetic and paramagnetic contributions to the off-nucleus isotropic shielding, , and to the zz component of the off-nucleus shielding tensor, , around benzene (C₆H₆) and cyclobutadiene (C₄H₄) are investigated using complete-active-space self-consistent field wavefunctions. Despite the substantial differences between and around the aromatic C₆H₆ and the antiaromatic C₄H₄, the diamagnetic and paramagnetic contributions to these quantities, and , and and , are found to behave similarly in the two molecules, shielding and deshielding, respectively, each ring and its surroundings. The different signs of the most popular aromaticity criterion, the nucleus-independent chemical shift (NICS), in C₆H₆ and C₄H₄ are shown to follow from a change in the balance between the respective diamagnetic and paramagnetic contributions. Thus, the different NICS values for antiaromatic and antiaromatic molecules cannot be attributed to differences in the ease of access to excited states only; differences in the electron density, which determines the overall bonding picture, also play an important role.     

On the Mechanical Properties of Popgraphene-Based Nanotubes: a Reactive Molecular Dynamics Study

Carbon-based tubular materials have sparked a great interest in future electronics and optoelectronics device applications. In this work, we computationally studied the mechanical properties of nanotubes generated from popgraphene (PopNTs). Popgraphene is a 2D carbon allotrope composed of 5-8-5 rings. We carried out fully atomistic reactive (ReaxFF) molecular dynamics for PopNTs of different chiralities ( and ) and/or diameters and at different temperatures (from 300 up to 1200 K). Results showed that the tubes are thermally stable (at least up to 1200 K). All tubes presented stress/strain curves with a quasi-linear behavior followed by an abrupt drop of stress values. Interestingly, armchair-like PopNTs ( ) can stand a higher strain load before fracturing when contrasted to the zigzag-like ones ( ). Moreover, it was obtained that Young's modulus (Y_Mod) (750–900 GPa) and ultimate strength (σ_US) (120–150 GPa) values are similar to the ones reported for conventional armchair and zigzag carbon nanotubes. Y_Mod values obtained for PopNTs are not significantly temperature-dependent. While the σ_US values for the showed a quasi-linear dependence with the temperature, the exhibited no clear trends.     

Microsecond Protein Dynamics from Combined Bloch-McConnell and Near-Rotary-Resonance R1p Relaxation-Dispersion MAS NMR

Studying protein dynamics on microsecond-to-millisecond (μs-ms) time scales can provide important insight into protein function. In magic-angle-spinning (MAS) NMR, μs dynamics can be visualized by rotating-frame relaxation dispersion experiments in different regimes of radio-frequency field strengths: at low RF field strength, isotropic-chemical-shift fluctuation leads to “Bloch-McConnell-type” relaxation dispersion, while when the RF field approaches rotary resonance conditions bond angle fluctuations manifest as increased rate constants (“Near-Rotary-Resonance Relaxation Dispersion”, NERRD). Here we explore the joint analysis of both regimes to gain comprehensive insight into motion in terms of geometric amplitudes, chemical-shift changes, populations and exchange kinetics. We use a numerical simulation procedure to illustrate these effects and the potential of extracting exchange parameters, and apply the methodology to the study of a previously described conformational exchange process in microcrystalline ubiquitin.     

The Reaction of Muonium with Hydrogen Peroxide in Aqueous Solution

Rate constants for the reactions of muonium (Mu) (the ultralight isotope of the hydrogen atom) with H₂O₂ in H₂O and D₂O₂ in D₂O have been determined at various temperatures and pH (pD) values. The data are consistent with the three reactions: , , and the equivalent for the deuterated entities. A significant positive H/D isotope effect was found for the undissociated peroxide, while for the anions the effect was negligible or slightly in the opposite direction. In addition, for concentrated solutions of peroxide a study of the muon spin polarization as a function of applied transverse magnetic field yielded results consistent with the rate constants determined from the direct decay measurements, and indicated that the reaction products are diamagnetic, most likely MuH and MuOH, i. e., no muoniated radical products are formed. These results are potentially relevant for management of the radiolysis products in nuclear industry.     

Front Cover: Critical Assessment of pH-Dependent Lipophilicity Profiles of Small Molecules: Which One Should We Use and In Which Cases? (ChemPhysChem 24/2023)

Lipophilicity is a physicochemical property with wide relevance in drug design, computational biology, food, environmental and medicinal chemistry. Lipophilicity is commonly expressed as the partition coefficient for neutral molecules, whereas for molecules with ionizable groups, the distribution coefficient (D) at a given pH is used. The logD_pH is usually predicted using a pH correction over the logP_N using the pK_a of ionizable molecules, while often ignoring the apparent ion pair partitioning . In this work, we studied the impact of on the prediction of both the experimental lipophilicity of small molecules and experimental lipophilicity-based applications and metrics such as lipophilic efficiency (LipE), distribution of spiked drugs in milk products, and pH-dependent partition of water contaminants in synthetic passive samples such as silicones. Our findings show that better predictions are obtained by considering the apparent ion pair partitioning. In this context, we developed machine learning algorithms to determine the cases that should be considered. The results indicate that small, rigid, and unsaturated molecules with logP_N close to zero, which present a significant proportion of ionic species in the aqueous phase, were better modeled using the apparent ion pair partitioning . Finally, our findings can serve as guidance to the scientific community working in early-stage drug design, food, and environmental chemistry.     

Effect of Fluorine Substitution on Absorption and Emission Properties of Figure-eight-shaped [5]Helicene Dimer: A Computational Study at RI-MP2/RI-ADC(2) Level

Chirality is a very important characteristic of optically active molecules and polyaromatics with helical structures, and plays a vital role in various applications in material science. In the present work, we show the effects of fluorine substitution at various positions in a figure-8-shaped [5]helicene dimer on the ground and excited state g-factors. Calculations for the ground and excited states are performed at the MP2 and ADC(2) levels of theory, respectively. The results reveal that fluorination has a large effect on the excited state structures. The values of the excited state dissymmetry factors for the molecules with fluorinations at both ends of the figure-8 systems are smaller than that of the parent system. On the other hand, fluorinations only in the stacked-phenyl region results in an increase in the value of . The perfluorinated system shows the smallest .     

Photoionization Bands of Cyanogen: Multi-Mode Vibronic Coupling and Renner-Teller Effects

Multi-mode vibronic coupling in the , , and electronic states of Cyanogen radical cation (C N ) is investigated with the aid of ab initio quantum chemistry and first principles quantum dynamics methods. The electronic degenerate states of Π symmetry of C N undergo Renner-Teller (RT) splitting along degenerate vibrational modes of π symmetry. The RT split components form symmetry allowed conical intersections with those from nearby RT split states or with non-degenerate electronic states of Σ symmetry. A parameterized vibronic Hamiltonian is constructed using standard vibronic coupling theory in a diabatic electronic basis and symmetry rules. The parameters of the Hamiltonian are derived from ab initio calculated adiabatic electronic energies. The vibronic spectrum is calculated, assigned and compared with the available experimental data. The impact of various electronic coupling on the vibronic structure of the spectrum is discussed.     

The Reaction of Sulfur Dioxide Radical Cation with Hydrogen and its Relevance in Solar Geoengineering Models

SO₂ has been proposed in solar geoengineering as a precursor of H₂SO₄ aerosol, a cooling agent active in the stratosphere to contrast climate change. Atmospheric ionization sources can ionize SO₂ into excited states of , which quickly reacts with trace gases in the stratosphere. In this work we explore the reaction of with excited by tunable synchrotron radiation, leading to ( ), where H contributes to O₃ depletion and OH formation. Density Functional Theory and Variational Transition State Theory have been used to investigate the dynamics of the title barrierless and exothermic reaction. The present results suggest that solar geoengineering models should test the reactivity of with major trace gases in the stratosphere, such as H₂ since this is a relevant channel for the OH formation during the nighttime when there is not OH production by sunlight. OH oxides SO₂, triggering the chemical reactions leading to H₂SO₄ aerosol.     

Development and Verification of a Diagnostic Technology for Waste Battery Deterioration Factors

We defined four major deterioration factors (electrolyte loss (EL), lithium loss (LL), lithium precipitation (LP), and compound deterioration (CD)). Then, we derived eleven key performance indicators (KPIs) for comparative analysis. After that, we fabricated three deteriorated cells for each of three deterioration factors (EL, LL, and LP) and one cell with CD (for verification) with four individual (dis)charging experiment manuals. The two major contributions of this study are the performance of 1) trend analysis to determine a suitable diagnostic metric by inspecting the eleven KPIs and 2) comparison analysis of and to verify the effectiveness of utilizing as a real-time deterioration diagnostic factor using a concept of model-in-the-loop simulation. The results show that 1) has the most conspicuous trendline tendency among the eleven comparison targets for all four major deterioration factors, and 2) the angle difference between the two trends of and lies within a minimum of 9° and a maximum of 43° (with a sscale on the x-axis and a scale on the y-axis for a clear trend line analysis). From this, we can conclude that the trendline-based real-time deterioration analysis employing may be practically applicable to a limited extent.     

Strong Structural and Electronic Binding of Bovine Serum Albumin to ZnO via Specific Amino Acid Residues and Zinc Atoms

ZnO biointerfaces with serum albumin have attracted noticeable attention due to the increasing interest in developing ZnO-based materials for biomedical applications. ZnO surface morphology and chemistry are expected to play a critical role on the structural, optical, and electronic properties of albumin-ZnO complexes. Yet there are still large gaps in the understanding of these biological interfaces. Herein we comprehensively elucidate the interactions at such interfaces by using atomic force microscopy and nanoshaving experiments to determine roughness, thickness, and adhesion properties of BSA layers adsorbed on the most typical polar and non-polar ZnO single-crystal facets. These experiments are corroborated by force field (FF) and density-functional tight-binding (DFTB) calculations on ZnO-BSA interfaces. We show that BSA adsorbs on all the studied ZnO surfaces while interactions of BSA with ZnO are found to be considerably affected by the atomic surface structure of ZnO. BSA layers on the surface have the highest roughness and thickness, hinting at a specific upright BSA arrangement. BSA layers on surface have the strongest binding, which is well correlated with DFTB simulations showing atomic rearrangement and bonding between specific amino acids (AAs) and ZnO. Besides the structural properties, the ZnO interaction with these AAs also controls the charge transfer and HOMO-LUMO energy positions in the BSA-ZnO complexes. This ZnO facet-specific protein binding and related structural and electronic effects can be useful for improving the design and functionality of ZnO-based materials and devices.     

Catalytic Reaction Mechanism of Bacterial GH92 α-1,2-Mannosidase: A QM/MM Metadynamics Study

The catalytic mechanism of a -dependent family 92 -mannosidase, which is abundantly present in human gut flora and malfunctions leading to the lysosomal storage disease α-mannosidosis, has been investigated using quantum mechanics/molecular mechanics and metadynamics methods. Computational efforts show that the enzyme follows a conformational itinerary of and the ion serves a dual purpose, as it not only distorts the sugar ring but also plays a crucial role in orchestrating the arrangement of catalytic residues. This orchestration, in turn, contributes to the facilitation of conformers for the ensuing reaction. This mechanistic insight is well-aligned with the experimental predictions of the catalytic pathway, and the computed energies are of the same order of magnitude as the experimental estimations. Hence, our results extend the mechanistic understanding of glycosidases.