Thermodynamic parameters for the binding process of the OH<Superscript>−</Superscript> ion with the dissipative structures. Calorimetric and conductometric titrations

Conductometric and calorimetric titrations of Extremely Diluted Solutions (EDS) were performed by adding HCl or NaOH solutions. The aim of this study is to obtain further confirmation of the hypothesized presence, in the EDS, of molecular aggregates of water molecules. The measurements on the EDS evidenced some relevant differences compared to those on solutions with just water as solvent. The conductivity and the pH caused by adding the titrant, namely NaOH or HCl, were markedly different to those of the control solutions. We suppose that the preparation procedure of the EDS could produce non-equilibrium changes in the supramolecular structure of water. The experimental results were interpreted by considering the interactions that can take place between the OH⁻ or H₃O⁺ and the hypothesized molecular aggregates of water molecules i.e. dissipative structures. A comparison was made about the nature of the driving force that leads to the formation of the complexes between the two ions deriving from probes and the molecular aggregates of water molecules (dissipative structures). In this study, we have determined the thermodynamic parameters of association between molecular aggregates of water molecules (dissipative structures) in the EDS and OH⁻ or H₃O⁺ probe ions. The experimental results were interpreted by considering a favorable interaction between the H₃O⁺ and OH⁻ ions and the dissipative structures, due, probably, to steric hindrance and chemical affinity with the aggregates.     

Supramolecular Hydrogels Based on L‐Phenylalanine Derivatives with a Positively Charged Terminal Group

A new hydrogelator based on L ‐phenylalanine with a long hydrophobic chain and positively charged terminus was synthesized, and its gelation behavior in H₂O was investigated. Polarized optical microscopy (POM), field emission scanning electron microscopy (FE‐SEM), and X‐ray diffraction (XRD) results indicate that the hydrogelator self‐assembles into fibres‐like aggregates which then lead to the formation of a hydrogel. ¹H‐NMR and CD spectra of hydrogels and aqueous solution revealed that intermolecular H‐bonding between the amide groups was the driving force for gelation. A luminescence study, in which ANS (8‐anilinonaphthalene‐1‐sulfonic acid) was used as a probe, indicated that the hydrophobic interactions between long chains were the driving force for gelation. Consequently, it was proved that the hydrogelator self‐assembles into fibre‐like aggregates and then forms supramolecular hydrogels through the H‐bonding and hydrophobic interactions.     

Determination of the dimerization constant of pinacyanol: role of the thermochromic effect

Pinacyanol (PIN), as other cyanine dyes, has demonstrated a unique ability to form associates such as dimers, and H- and J-aggregates. This association is strongly favoured in water, and even at low dye concentrations, dimers and superior order aggregates are present. As a consequence, the determination of the dimerization constant involves sometimes a significant error when these aggregates are neglected. As an increase in temperature shifts the equilibrium among the different species towards the lowest order aggregates, we have obtained the spectra of PIN at several temperatures. By extrapolating some spectral characteristics at high temperatures, a spectrum of the dimer without any contribution of other aggregates was obtained. From this spectrum and that of the monomer, the dimerization constant was calculated, as well as the Gibbs energy change associated to the reaction. The enthalpy and entropy changes of the dimerization were determined from the dependence of the dimerization constants on the temperature. From these results it can be inferred that the driving force of the dimerization is of enthalpic origin.     

<Emphasis Type="Italic">cis</Emphasis>-Pt Mediated Assembly of Gold Nanoparticles on DNA

In this work we describe the formation of 1-dimensional (1D) assemblies of cysteamine functionalized gold nanoparticles on DNA using the complex cis-Pt (cis-Pt(NH₃)₂Cl₂) as site specific linker and their immobilization on mica and silicon. The characterization by atomic force microscopy and electron microscopy served as complementary methods. Using atomic force microscopy with additional information of phase images the DNA as well as the Au particles can be visualized independently and be differentiated in the 1-dimensional aggregates. Electron microscopy shows individual particles are arranged as a string of pearls. Dedicated to Günter Schmid in occasion of his 70th birthday.     

Probing surface adhesion forces of Enterococcus faecalis to medical-grade polymers using atomic force microscopy

The aim of this study was to compare the initial adhesion forces of the uropathogen Enterococcus faecalis with the medical-grade polymers polyurethane (PU), polyamide (PA), and poly(tetrafluoroethylene) (PTFE). To quantify the cell-substrate adhesion forces, a method was developed using atomic force microscopy (AFM) in liquid that allows for the detachment of individual live cells from a polymeric surface through the application of increasing force using unmodified cantilever tips. Results show that the lateral force required to detach E. faecalis cells from a substrate differed depending on the nature of the polymeric surface: a force of 19 +/- 4 nN was required to detach cells from PU, 6 +/- 4 nN from PA, and 0.7 +/- 0.3 nN from PTFE. Among the unfluorinated polymers (PU and PA), surface wettability was inversely proportional to the strength of adhesion. AFM images also demonstrated qualitative differences in bacterial adhesion; PU was covered by clusters of cells with few cell singlets present, whereas PA was predominantly covered by individual cells. Moreover, extracellular material could be observed on some clusters of PU-adhered cells as well as in the adjacent region surrounding cells adhered on PA. E. faecalis adhesion to the fluorinated polymer (PTFE) showed different characteristics; only a few individual cells were found, and bacteria were easily damaged, and thus detached, by the tip. This work demonstrates the utility of AFM for measurement of cell-substrate lateral adhesion forces and the contribution these forces make toward understanding the initial stages of bacterial adhesion. Further, it suggests that initial adhesion can be controlled, through appropriate biomaterial design, to prevent subsequent formation of aggregates and biofilms.     

Mechanistic aspects of protein/material interactions probed by atomic force microscopy

Physicochemical studies on the mechanisms of protein adsorption onto solid material surfaces have been extensively performed so far, mainly based on the analysis of factors such as the equilibrium adsorbed amount (adsorption isotherms), time-dependent change of adsorbed amount (adsorption kinetics), and conformational change of adsorbed protein. However, direct understanding of the strength of the molecular interaction between protein and the material surface has not been established yet. For this issue, the force measurement techniques of an atomic force microscope (AFM) using a protein-modified probe tip are recently becoming powerful tools to analyze the actual interaction forces between protein and material surfaces. In this mini review, we discuss the characteristics and interpretation of the AFM force-versus-distance curves (f–d curves) obtained with the protein-modified probe tip, and the relationship between the forces measured from the f–d curves and the driving forces in the natural process of protein adsorption. Relative degrees of each of the following contributions which determine the character of protein adsorption are clarified: (1) the intrinsic protein/material forces mediated by solvent, (2) the thermodynamic stability of protein/material adhesion interface, and (3) diffusion force of protein molecules. Within these driving forces, the latter two in particular are confirmed to play essential roles in determining the character of protein adsorption, based on the profiles of f–d curves.     

Fabrication of functional nano-objects via self-assembly of nanostructured hybrid materials

A simple route to fabricate functional nano-objects via self-assembly of block copolymer-based hybrid materials is described. In water–toluene mixtures, spheres, rod-like morphologies, and ring-like morphologies as well as vesicles of metal loaded block copolymers micelles are fabricated. The concept is generic to realize different functionalities by incorporating various inorganic components (Au, Ag, Pt, Co…) into the block copolymer matrix. A mechanism describing the formation of micellar aggregates with different morphologies is presented based on a simple force balance approach. Moreover, the composition of the solvent mixture is modified to gain control over the morphology of micellar aggregates. It was found that swelling of the micelle core with a selective cosolvent is the driving force to induce morphology transitions from spherical to rod- and ring-like structures as well as vesicles. These nano-objects can be further used as building blocks to construct well-defined structures via self-assembly in spin coated thin films. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 1642–1650, 2010     

Polymer compatibility - a consequence of repulsive groups within monomer units

The majority of compatible polymer mixtures known so far has been rationalized by assuming special interactions between the different polymers or by specific repellent forces within certain types of copolymers. Thus, the compatibility of PMMA with special copolymers of styrene and acrylonitrile is explained by an intramolecular repulsion within the copolymer between the two comonomers styrene and acrylonitrile. In our opinion this phenomenon is not limited to copolymers, but also holds for explaining the compatibility of various homopolymers such as PVDF/PMMA. To this end we simply regard the homopolymer PVDF (-CH₂-CF₂-) as a copolymer of -CH₂- and -CF₂- “monomers”. By the same token it is possible to assume repellent forces within the PMMA monomer units (i.e. repulsion between the CH₂-C(CH₃) and the polar carbonyl group). Those strong repellent forces within the PVDF and PMMA homopolymers can be reduced by mixing the two species. This concept of repulsive forces within monomers as a driving force for polymer-polymer compatibility can be used to search for new classes of compatible polymers. This will be demonstrated with the polystyrene/polyalkylmethacrylate blends. Thus, with comparable geometry in the side chains, polystyrene and polymethacrylic esters will form compatible blends, as born out in the systems polystyrene/polycyclohexyl methacrylate or poly-tert-butyl styrene/poly-3,3,5-trimethylcyclohexylmethacrylate which are compatible in all proportions. Taking into account certain steric prerequisites, one can even obtain compatible blends lacking exothermic interaction.     

Molecular Mechanics Study of the Inclusion Complexes of Some 1,2,4-Oxadiazole Derivatives of 3,3′-Bis (1,2,4-Oxadiazol-5(4H)-one) with β-Cyclodextrin

Molecular mechanics calculations were employed to study the inclusion of some 1,2,4-oxadiazol derivatives in β-cyclodextrin in vacuum and in the presence of water as a solvent using MM + force field. The driving forces for complexation in both environments are dominated by nonbonded van der Waals host–guest interactions with little electrostatic contribution. Among 1,2,4-oxadiazole derivatives investigated in this work, 3,3′-bis(1,2,4-oxadiazol-5(4H)-one) (H₂OD) forms the least stable 1:1 complex and the stability increases as the chain length increases.     

The distribution of stresses in rigid fractal-like aggregates in a uniform flow field

The distribution of stresses in rigid fractal-like aggregates moving in a uniform flow field was investigated for particle-cluster and cluster-cluster aggregates with fractal dimensions ranging from 1.7 to 2.3. The method of reflections was used to calculate the drag force on each monomer, while the internal inter-monomer interactions were calculated by applying force and torque balances on each primary particle. The stress distribution was found to be very dissimilar from that of the applied external forces. Although the highest external forces act on the monomers located at the periphery of the aggregate where the drag is more intense, the most stressed inter-monomer bonds are always located in the internal part of the aggregate. This phenomenon is a consequence of the structure of the studied fractal aggregates, which are made mainly of filaments of monomers: the stress generated by the external forces is propagated and progressively accumulated by such filaments up to their roots, which are situated in the inner part of the cluster. Such a behaviour is different from that exhibited by highly connected structures, in which the loads are absorbed locally by the structure and the largest stresses are normally found in the proximity of the highest applied external forces.     

Polymer translocation under time-dependent driving forces: resonant activation induced by attractive polymer-pore interactions

We study the driven translocation of polymers under time-dependent driving forces using N-particle Langevin dynamics simulations. We consider the force to be either sinusoidally oscillating in time or dichotomic noise with exponential correlation time, to mimic both plausible experimental setups and naturally occurring biological conditions. In addition, we consider both the case of purely repulsive polymer-pore interactions and the case with additional attractive polymer-pore interactions, typically occurring inside biological pores. We find that the nature of the interaction fundamentally affects the translocation dynamics. For the non-attractive pore, the translocation time crosses over to a fast translocation regime as the frequency of the driving force decreases. In the attractive pore case, because of a free energy well induced inside the pore, the translocation time can be a minimum at the optimal frequency of the force, the so-called resonant activation. In the latter case, we examine the effect of various physical parameters on the resonant activation, and explain our observations using simple theoretical arguments.     

Recognition of Multiple Methyl Groups on Aromatic Rings by a Polyaromatic Cavity

The methyl group is a small substituent, usually showing relatively weak or no interactions with other functional groups and metal ions. Herein, we present the recognition of the number of methyl groups on synthetic and natural aromatic compounds (i.e., benzene and xanthine derivatives, respectively) by the 1 nm‐sized polyaromatic cavity of a coordination capsule in water. Detailed competitive encapsulation experiments as well as X‐ray crystallographic analysis revealed that multiple guest–host CH₃–polyaromatic interactions in the confined nanospace are key driving forces for the high selectivity.     

Solid-state aggregation of mercury bis-acetylides, Hg(CCR)2, R=Ph, SiMe3

The structures of Hg(CCR)₂ (R=Ph, SiMe₃) show unusual aggregation in the solid state. When R=Ph there are eight independent molecules in the asymmetric unit, while for R=SiMe₃ there are pentameric aggregates. The Hg…Hg distances are 3.7–4.0 Å, possibly indicating weak mercuriophilic interactions, but the main driving force for clustering appears to be interactions between Hg atoms and the CC bonds of adjacent molecules.     

Translocation of α-helix chains through a nanopore

The translocation of α-helix chains through a nanopore is studied through Langevin dynamics simulations. The α-helix chains exhibit several different characteristics about their average translocation times and the α-helix structures when they transport through the nanopores under the driving forces. First, the relationship between average translocation times τ and the chain length N satisfies the scaling law, τ～N(α), and the scaling exponent α depends on the driving force f for the small forces while it is close to the Flory exponent (ν) in the other force regions. For the chains with given chain lengths, it is observed that the dependence of the average translocation times can be expressed as τ～f(-1/2) for the small forces while can be described as τ～f in the large force regions. Second, for the large driving force, the average number of α-helix structures N(h) decreases first and then increases in the translocation process. The average waiting time of each bead, especially of the first bead, is also dependent on the driving forces. Furthermore, an elasticity spring model is presented to reasonably explain the change of the α-helix number during the translocation and its elasticity can be locally damaged by the large driving forces. Our results demonstrate the unique behaviors of α-helix chains transporting through the pores, which can enrich our insights into and knowledge on biopolymers transporting through membranes.     

Low-temperature chemical bath deposition of crystalline ZnO

ZnO crystals can be grown from alkaline aqueous solution not only by the standard hydrothermal technique at temperatures between 350 °C and 400 °C, but also by chemical bath deposition (CBD) at temperatures below 100 °C. In the presence of ZnO and ScAlMgO₄ (SCAM) substrates almost all ZnO deposits on the substrate, with different habits, however. Under optimized conditions even homoepitaxial layers can be obtained, while rod-like structures are obtained on SCAM substrates. The chemistry and the driving forces behind the two processes are considered in detail and the temperature dependence of the solution composition has been calculated. The driving force for the ZnO crystal growth in the standard hydrothermal technique is the difference in the ZnO solubility in alkaline solutions at different temperatures. In contrast, the driving force for the chemical bath deposition of ZnO at low temperatures is the decay of zinc ion complex molecules with increasing temperature.     

扩散模型和凝聚模型耦合作用下胶体凝聚动力学的Monte Carlo模拟研究

以扩散模型(Ds(γ)=D0×sγ)和凝聚模型(Pij(σ)=P0×(i×j)σ)为基础,对胶体体系随时间的演变、团簇大小分布及其标度关系、团簇的重均大小S(t)的变化规律以及模型对最终分形维数的影响四个角度进行了比较研究,发现扩散指数γ0和凝聚概率指数σ0对胶体的凝聚动力学过程有相似的影响.本文在较宽的γ和σ取值范围内,对胶体的凝聚动力学进行了模拟研究,对慢速凝聚向快速凝聚的转化机理作了定量分析,并进一步分析了在团簇-团簇凝聚(CCA)模型下,得到类似扩散置限凝聚(DLA)模型的凝聚体的物理意义,结果表明:(1)γ0代表了体系中团簇或单粒做"定向运动"而非无规则的布朗运动的情况.这种"定向运动"的推动力可能来自于大团簇产生的强"长程范德华力"、"电场力"等,或来自于体系边界处的外力场的作用.(2)当σ0时,体系成为先快后慢的慢速凝聚,这可能对应大团簇为一排斥中心,即胶体颗粒存在"排斥力场"的现象.(3)证实了团簇的重均大小在凝聚过程的早期按指数规律增长,而后期按幂函数规律增长的实验现象.模拟研究还表明,胶体体系的凝聚动力学过程,在σ0时是一个存在正反馈机制的非线性动力学过程,而在σ0时则体现出负反馈的特征.     

Electrostatics and aggregation: how charge can turn a crystal into a gel

The crystallization of proteins or colloids is often hindered by the appearance of aggregates of low fractal dimension called gels. Here we study the effect of electrostatics upon crystal and gel formation using an analytic model of hard spheres bearing point charges and short range attractive interactions. We find that the chief electrostatic free energy cost of forming assemblies comes from the entropic loss of counterions that render assemblies charge-neutral. Because there exists more accessible volume for these counterions around an open gel than a dense crystal, there exists an electrostatic entropic driving force favoring the gel over the crystal. This driving force increases with increasing sphere charge, but can be counteracted by increasing counterion concentration. We show that these effects cannot be fully captured by pairwise-additive macroion interactions of the kind often used in simulations, and we show where on the phase diagram to go in order to suppress gel formation.     

Stability of 2-D colloidal particle aggregates held against flow stress in an ultrasound trap

The formation of a two-dimensional aggregate of 25 microm latex particles in a 1.5 MHz ultrasound standing wave (USW) field and its disintegration in a flow were studied. The aggregate was held in the pressure node plane, which allowed continuous microscope observation and video recording of the processes. The trajectories and velocities of the particles approaching the formation site were analyzed by particle image velocimetry (PIV). Since the direct radiation force on the particles dominated the drag due to acoustic streaming, the acoustic pressure profile in the vicinity of the aggregate was quantifiable. The drag coefficients D(coef) for 2- to 485-particle aggregates were estimated from the balance of the drag force FD and the buoyancy-corrected gravitational force during sedimentation on termination of the ultrasound when the long axis of the aggregate was in the vertical plane. D(coef) were calculated from FD as proportional to the aggregate velocity. Experiments on particle detachment by flow (in-plane velocity measured by PIV) from horizontal aggregates suspended in deionized water and CaCl2 solution of different concentrations showed that the mechanical strength of the aggregates depended on the acoustic pressure amplitude P0 and ionic strength of the solution. In deionized water the flow velocity required to detach the first single particle from an aggregate increased from 1 mm s-1 at P0 = 0.6 MPa to 4.2 mm s-1 at P0 = 1.4 MPa. The balance of forces acting on particles in a USW trap is discussed. The magnitude of the shear stress employed ( approximately 0.05 Pa) and separation forces suggests that this technique can be applied to studying the mechanical responses of cell aggregates to hydrodynamic flow, where cell-cell interaction can be separated from the effects of solid substrata.     

Computer simulations of water-mediated force between phospholipid membranes

The knowledge of forces operating between phospholipid bilayer membranes in water and aqueous solutions is a prerequisite for understanding membrane-membrane coupling phenomena such as stacking, adhesion, and fusion. This explains the substantial efforts undertaken in the last two decades to measure and rationalize the intermembrane force as a function of separation, with an emphasis on short-range repulsion. Despite considerable progress in experimental measurements, the interpretation of the force-distance curves in terms of physically distinct force components involves serious difficulties because the experiment provides only the total magnitude of the force. All this imparts importance to computer simulations, that allow direct evaluation of the intermembrane force and its components through the respective ensemble averages. In this paper we briefly review these computer simulations, as well as some relevant studies. The simulation results are discussed in the context of the existing theories of the intermembrane forces.