Theoretical Study on the Structures and Properties of Hydrogen Bonding Complexes between Diazines and Water

Density functional theory B3LYP method and second-order Moller-Plesset perturbation theory MP2 method were employed to obtain the optimized geometries of the ground state and interaction energy for diazines and water complexes. The results show that the ground state complexes have strong hydrogen bonding interaction with -20.99, -16.73 and -15.31 kJ/mol after basis set superposition error and zero-point vibration energy correction for pyridazine-water, pyrimidine-water and pyrazine-water, respectively, and large red-shift for the symmetric H-O stretching vibration frequencies due to the formation of N…H-O hydrogen bond in the diazine-water complexes. The NBO analysis indicates that intermolecular charge transfer are 0.0316, 0.0255 and 0.0265 e respectively. In addition, the first singlet （n,n＊） vertical excitation energy of the monomer and the hydrogen bonding complexes between diazines and water was investigated by time-dependent density functional theory.     

Substituent Effects in π-Hole Regium Bonding Interactions Between Au(p-X-Py)2 Complexes and Lewis Bases: An ab initio Study

Long range substituent effects in regium bonding interactions involving Au(I) linear complexes are investigated for the first time. The Au(I) atom is coordinated to two para-substituted pyridine ligands. The interaction energy (RI-MP2/def2-TZVP level of theory) of the π-hole regium bonding assemblies is affected by the pyridine substitution. The Hammett's plot representations for several sets of Lewis bases have been carried out and, in all cases, good regression plots have been obtained (interaction energies vs. Hammett's σ parameter). The Bader's theory of “atoms-in-molecules” has been used to evidence that the electron density computed at the bond critical point that connects the Au-atom to the electron donor can be used as a measure of bond order in regium bonding. Several X-ray structures retrieved from the Cambridge Structural Database (CSD) provide experimental support to the existence of π-hole regium bonding in [Au(Py)₂]⁺ derivatives.     

Theoretical Study on Intermolecular Interactions and Thermodynamic Properties of Dimethylnitroamine Clusters

Ab initio SCF and Mφller-Plesset correlation correction methods in combination with counterpose procedure for BSSE correction have been applied to the theroetical studying of dimethylnitroamine and its dimers and trimers.Three optimized stable dimers and two trimers have been obtained.The corrected binding energies of the most stable dimer and trimer were predicted to be -24.68kJ/mol and -47.27kJ/mol,respectively at the MP2/6-31G^*//HF/6-31G^* level.The proportion of correlated interation energies to their total interaction energies for all clusters was at least 29.3 percent,and the BSSE of ΔE(MP2) was at least 10.0kJ/mol.Dispersion and/or electrostatic force were dominant in all clusters.There exist cooperative effects in both the chain and the cyclic trimers.The vibrational frequencies associated with N-O stretches or wags exhibit slight red shifts,but the modes associated with the motion of hydrogen atoms of the methyl group show somewhat blue shifts with respect to those of monomer.Thermodynamic properties of dimethylnitroamine and its clusters at different temperatures have been calculated on the basis of vibrational analyses.The changes of the Gibbs free energies for the aggregation from monomer to the most stable dimer and trimer were predicted to be 14.37kJ/mol and 30.40kJ/mol,respectively,at 1 atm and 298.15K.     

Theoretical Study on Intermolecular Interactions and Thermodynamic Properties of Difluoroamine Complex

Introduction　　ApplicationsofabinitiocalculationstointermolecularinteractionsincludingeitherweakvanderWaalsorstrongerhydrogenbondinghavedrawnmuchattentioninthepastdecadesbecausetheyareimportantinawiderangeofphysical,chemicalandbiologicalfields .1 5Inre centyears ,wehaveappliedtheintermolecularinteractionstoenergeticsystemsandobtainedsomemeaningfulinfor mationthatisvaluableforthestudyofenergeticmateri als .6 14 Thebehaviorofmolecularcomplexesisusuallybe tweentwoextremes :thegasphaseandthecrys…     

Theoretical Study on Intermolecular Interactions and Thermodynamic Properties of Nitroamine Dimers

Ab initio self-consistent field(SCF) and Mφller-Plesset correlation correction methods employing 6-31G^** basis set have been applied to the optimizations of nitroamine dimers.The binding energies have been corrected for the basis set superposition error (BSSE) and the zero-point energy.Theree optimized dimers have been obtained.The BSSE corrected binding energy of the most stable dimer is predicted to be -31.85kJ/mol at the MP4/6-31G^**//MP2/6-31G^** level.The energy barriers of the Walden conversion for -NH2 group are 19.7kJ/mol and 18.3kJ/mol for monomer and the most stable dimer,respectively.The molecular interaction makes the internal rotation around N1-N2 even more difficult.The thermodynamic properties of nitroamine and its dimers at different temperatures have been calculated on the basis of vibrational analyses.The change of the Gibbs free energy for the aggregation from monomer to the most stable dimer at standard pressure and 298.2 K is predicted to be 14.05kJ/mol.     

Halogen and Hydrogen Bonding Benzothiophene Diol Derivatives: A Study Using ab initio Calculations and X-Ray Crystal Structure Measurements

The aim of this study is to describe and compare the supramolecular interactions, in the solid state, of chloro-, bromo-, and iodobenzothiophene diols. The compounds were obtained through organo-catalyzed reactions starting from 3-substituted halobenzothiophene carbaldehydes. Energies of the noncovalent interactions were obtained by density functional theory calculations. Bond distances and angles were found to be in accordance with those determined by X-ray structure analysis. anti-Bromobenzothiophene derivatives showed strong halogen⋅⋅⋅π interactions between bromine and the heterocyclic phenyl ring, corresponding to an energy of 7.5 kcal mol⁻¹. syn-Bromo and syn-iodo derivatives appeared to be isostructural, showing X⋅⋅⋅O (carbonyl) interactions, π stacking, and formation of extended hydrogen bonding networks. In contrast, the chloro derivatives displayed no halogen bonding interactions.     

Substituent Effects on Hydrogen Bonding in Watson–Crick Base Pairs. A Theoretical Study

We have theoretically analyzed Watson–Crick AT and GC base pairs in which purine C8 and/or pyrimidine C6 positions carry a substituent X = H, F, Cl or Br, using the generalized gradient approximation (GGA) of density functional theory at BP86/TZ2P. The purpose is to study the effects on structure and hydrogen bond strength if X = H is substituted by a halogen atom. Furthermore, we wish to explore the relative importance of electrostatic attraction versus orbital interaction in the above multiply hydrogen-bonded systems, using a quantitative bond energy decomposition scheme. We find that replacing X = H by a halogen atom has relatively small yet characteristic effects on hydrogen bond lengths, strengths and bonding mechanism. In general, it reduces the hydrogen-bond-accepting- and increases the hydrogen-bond-donating capabilities of a DNA base. The orbital interaction component in these hydrogen bonds is found for all substituents (X = H, F, Cl, and Br) to contribute about 41% of the attractive interactions and is thus of the same order of magnitude as the electrostatic component, which provides the remaining 59% of the attraction.     

Modulation of Metallophilic and π–π Interactions in Platinum Cyclometalated Luminophores with Halogen Bonding

Luminescent cyclometalated complexes [M(C^N^N)CN] (M=Pt, Pd; HC^N^N=pyridinyl- (M=Pt 1 , Pd 5 ), benzyltriazolyl- (M=Pt 2 ), indazolyl- (M=Pt 3 , Pd 6 ), pyrazolyl-phenylpyridine (M=Pt 4 )) decorated with cyanide ligand, have been explored as nucleophilic building blocks for the construction of halogen-bonded (XB) adducts using IC₆F₅ as an XB donor. The negative electrostatic potential of the CN group afforded CN⋅⋅⋅I noncovalent interactions for platinum complexes 1 – 3 ; the energies of XB contacts are comparable to those of metallophilic bonding according to QTAIM analysis. Embedding the chromophore units into XB adducts 1 – 3 ⋅⋅⋅IC₆F₅ has little effect on the charge distribution, but strongly affects Pt⋅⋅⋅Pt bonding and π-stacking, which lead to excited states of MMLCT (metal–metal-to-ligand charge transfer) origin. The energies of these states and the photoemissive properties of the crystalline materials are primarily determined by the degree of aggregation of the luminophores via metal–metal interactions. The adduct formation depends on the nature of the metal and the structure of the metalated ligand, the variation of which can yield dynamic XB-supported systems, exemplified by thermally regulated transition 3 ↔ 3 ⋅⋅⋅IC₆F₅.     

A DFT Study on the Interactions between Sulfolane and Aromatic Hydrocarbons

The B3LYP method with 6-31G^*, 6-311+G^* and aug-cc-pvdz basis sets was used to predict the geometries of aromatic hydrocarbon (benzene, toluene, benzonitrile) and sulfolane interaction systems. Nine stable conformers were obtained with no imaginary frequencies. The interaction energies of these binary mixtures have been obtained at the B3LYP/6-31G^*, B3LYP/6-311+G^* and B3LYP/aug-cc-pvdz levels. The natural bond orbital (NBO) and the atoms in molecules theory (AIM) were used to analyze the nature of the interactions at these levels. The results show that hydrogen bonds are present in these systems. Of all levels, the interaction of the sulfolane-benzonitrile system at B3LYP/6-311+G^* is the strongest with an interaction energy of −21.84 kJ⋅mol⁻¹ (BSSE corrected), and the intensity order of the interactions is A(2) > A(3) > A(1), B(2) > B(3) > B(1), C(2) > C(3) > C(1), and C(2) > B(2) > A(2).     

Study on the Cation-π Interactions between Ammonium Ion and Aromatic π Systems

The nature and strength of the cation-π interactions between NH4^＋ and toluene, p-cresol, or Me-indole were studied in terms of the topological properties of molecular charge density and binding energy decomposition. The results display that the diversity in the distribution pattern of bond and cage critical points reflects the profound influence of the number and nature of substituent on the electron density of the aromatic rings. On the other hand, the energy decomposition shows that dispersion and repulsive exchange forces play an important role in the organic cation （NH4^＋）-π interaction, although the electrostatic and induction forces dominate the interaction. In addition, it is intriguing that there is an excellent correlation between the electrostatic energy and ellipticity at the bond critical point of the aromatic π systems, which would be helpful to further understand the electrostatic interaction in the cation-π complexes.     

Theoretical Study on the Reaction Mechanism between Dichlorocarbene and Armchair Single-walled Carbon Nanotubes

1 INTRODUCTION Carbon nanotubes have many potential applica- tions due to their unique structures and properties[1～4]. Physicists have been studying their electrical, me- chanical and other properties since their discove- ries[5, 6]. Recently, chemists are interested in carbon nanotubes because their properties can be altered by chemical functionalization[7～14], and these functiona- lized nanotubes can undergo further chemical trea- tment. So the potential application range of such na- …     

Ab Initio Calculations on Halogen Bond Between N——Br and Electron-donating Groups

Ab initio calculations of complexes formed between N-bromosuccinimide and a series of electron-donating groups were performed at the level of MP2/Lanl2DZ to gain a deeper insight into the nature of the N—Br halogen bonding. For the small complexes, H3C—Br…NH3 and H2N—Br…NH3, the primary calculation has demonstrated that the N—Br in H2N—Br…NH3 can form a much stronger halogen-bonding complex than the C—Br. A comparison of neutral hydrogen bond complex series reveals that the electron-donating capacities of the atoms decrease in the order, N>O>S; O(sp3)>O(sp2), which is adequate for the C—Br halogen bonding. Interaction energies, in conjunction with the geometrical parameters show that the affinitive capacity of trihalide anions X-3 with N-bromosuccinimide are markedly lower than that of the corresponding X- with N-bromosuccinimide, even lower than those of neutral molecules with N-bromosuccinimide. AIM analyses further confirmed the above results.     

A Comparative Study on the Thermodynamics of Halogen Bonding of Group 10 Pincer Fluoride Complexes

The thermodynamics of halogen bonding of a series of isostructural Group 10 metal pincer fluoride complexes of the type [(3,5-R₂-^tBuPOCOP^tBu)MF] (3,5-R₂-^tBuPOCOP^tBu=κ³-C₆HR₂-2,6-(OPtBu₂)₂ with R=H, tBu, COOMe; M=Ni, Pd, Pt) and iodopentafluorobenzene was investigated. Based on NMR experiments at different temperatures, all complexes 1-tBu (R=tBu, M=Ni), 2-H (R=H, M=Pd), 2-tBu (R=tBu, M=Pd), 2-COOMe (R=COOMe, M=Pd) and 3-tBu (R=tBu, M=Pt) form strong halogen bonds with Pd complexes showing significantly stronger binding to iodopentafluorobenzene. Structural and computational analysis of a model adduct of complex 2-tBu with 1,4-diiodotetrafluorobenzene as well as of structures of iodopentafluorobenzene in toluene solution shows that formation of a type I contact occurs.     

Theoretical Study on the Mechanism of the Cycloaddition Reaction between Alkylidene Carbene and Ethylene

The mechanism of cycloaddition reaction between singlet alkylidene carbene and ethylene has been investigated with second-order Moller-Plesset perturbation theory (MP2). By using 6-31 G^* basis, geometry optimization, vibrational analysis and energetics have been calculated for the involved stationary points on the potential energy surface. The results show that the title reaction has two major competition channels. An energy-rich intermediate (INT) is firstly formed between alkylidene carbene and ethylene through a barrier-free exothermic reaction of 63.62 kJ/mol, and the intermediate then isomerizes to a three-membered ring product (P 1) and a four-memberd ring product (P2) via transition state TS1 and TS2, in which energy barriers are 47.00 and 51.02 kJ/mol, respectively. P1 is the main product.     

Ab Initio Study on the Isomerization and Dehydrogenation of Methylnitrene

The ab initio calculations were performed at the RHF/4-31G level with the reaction pathways of the iso-merization and dehydrogenation of methylnitrene by the intrinsic reaction coordinate method. The results show that the transformation from methylnitrene to methylenimine would be very easy. This accountes for the experimental fact that one couldn' t find the methylnitrene, but only obtained the methylenimine in the pyrolysis of methyl azide. The mode-selective study reveals the reaction coordinates (IRC) of isomerization and dehydrogenation of methylnitrene are associated with the molecular deformation mode of 1191 cm-1 and the methyl group unsymmetrical stretch mode, respectively. The coupling between normal coordinates is favourable to select the reaction channel of isomerization.     

Halogen Bonding of N-Halosuccinimides with Amines and Effects of Brønsted Acids in Quinuclidine-Catalyzed Halocyclizations

An arguable expectation in halogen chemistry is that an amine will react oxidatively with an N-halosuccinimide (NXS) to form an N-halogenated species bearing a covalent N−X bond. While likely for NCS under most conditions, we find this expectation simply not true for NIS and largely inaccurate for NBS. Herein, we disclose evidence through systematic NMR and X-ray studies that non-covalent halogen bonded amine complexes of NIS predominate over covalent N-halogenated species, even with primary and secondary amines. For example, during the catalytic electrophilic halocyclization of gem-disubstituted alkenes by cinchona-like amines, the quinuclidine complexes of NIS and NBS display lower reactivity than their parent N-halosuccinamides and require the presence of an appropriate Brønsted acid. Specifically, a Brønsted acid and quinuclidine jointly catalyze the halo-cycloetherification of γ-alkenyl alcohols with NIS or NBS, while only quinuclidine acts as a catalyst in the halolactonization of γ-alkenoic acids. Although our evidence confirms a transient N-halogenated quaternary ammonium salt as the halonium species, it is important to note that NIS predominantly forms ‘off-cycle’ halogen bonded amine complexes in solution.     

Theoretical study of solvent effect on π-EDA complexation II. Complex between TCNE and two benzene molecules

Formation of tetracyanoethylene—benzene 1: 1 and 1: 2 complexes was modeled using the Møller—Plesset second-order theory (MP2) and polarized continuum model (PCM). The MP2 calculated geometry of 1: 1 complex presents a plane-parallel C _2υ sandwich structure with interplanar distance 3.05 × 10^?10 m, while the 1: 2 complex has D _2h geometry where the planparallel distance is equal to 3.09 × 10^?10 m. The MP2 calculations indicate that the main part of formation enthalpy in both complexes is dispersion energy due to intermolecular electron correlation. The calculations also show that the formation entropy destabilizes both complexes since from the two constituent molecules one complex molecule arises. The MP2/6-31G* procedure showed to be a suitable tool for the estimation of the relative importance of 1: 2 complexation compared to the 1: 1 complexation. In the gas phase the ratio of the equilibrium constants of both complexes K _1:2/K _1:1 = 0.09 was calculated. The presence of solvent, treated by the PCM, further destabilized the 1: 2 complex with respect to the 1: 1 complex. The ratio K _1:2/K _1:1 in CH₂Cl₂ calculated by the PCM method was 0.022, i.e. the 1: 2 complex was almost 50 times less stable than the 1: 1 complex, which is in agreement with available experimental data. According to the calculations, solvent always destabilizes complex with respect to the isolated (solvated) components.It was also found that charge polarization in the 1: 2 complex with respect to that in the 1: 1 complex was not strictly additive due to the presence of the second benzene molecule in the 1: 2 complex. Non-additive were also formation enthalpy, entropy, polarizability, charge transfer from donors to acceptor molecule and other properties. This fact is caused by a slightly changed interaction between constituent molecules in the 1: 2 complex in comparison with the 1: 1 complex as well as by the interaction between benzene molecules in the 1: 2 complex which is missing in the 1: 1 complex.Preliminary CIS/6-31G* theoretical study regarding a few first-electron (electron charge transfer) transitions in both complexes indicates the presence of Frenkel excitn and Davydov transition energy splitting in the 1: 2 “supercomplex” with the first allowed π → π* absorption transition at λ = 355 nm, while the first allowed transition in the case of 1: 1 complex was characterized by λ = 392 nm with the oscillator strength only half of that of the 1: 2 complex, which is in agreement with experiment. These unexpected large hypso-and hypochromic effects predicted by the theory could allow to overcome difficulties of the experimental determination of the 1: 2 complexation.     

Theoretical Study of the Isomerization Reaction of 1-3 H Transfer on Formamidine Substituted by Halogen

The ab initio method has been used to study the 1-3 H transfer reaction on formamidine substituted by halogen. The calculation results show that the substituted halogen has two effects on the 1-3 H transfer reaction: decreasing the activation energy and stabilizing the C=N double bond owing to the conjugative effect of p-π-p of products and transition states.     

Theoretical Chemistry Study of the Hydrogen-bonded Interaction between Acylamine and Chloromethane Compounds

1 INTRODUCTION The mutual interaction of molecules is related with many properties of the material, such as optics, electricity and magnetism. Moreover, chemical re- action and molecule recognition are related to the mutual interaction among molecules too. So, the weak interactions among molecules have attracted many chemists’ attentions. The law of mutual interaction of molecules has been widely used in many research fields, such as, studying the mechanism of organic reaction and de- si…     

Substituent Effects on the Hydrogen Bonding between 4-Substituted Phenols and HF, H2O, NH3

Density function theory UB3LYP/6-31 g(d) calculations were performed to study the hydrogen bonds between para-substituted phenols and HF, H2O, or NH3. It revealed that many properties of the non-covalent complexes, such as the interaction energies, donor-acceptor distances, bond lengths and vibration frequencies, showed well-defined substituent effects. Therefore, from the substituent effects not only the mechanism of a certain non-covalent interaction can be better understood, but also the interaction energies and structures of a certain non-covalent complex, which otherwise might be very hard or resource-consuming to estimate, can be easily predicted.