Effect of lattice-gas atoms on the adsorption behaviour of thioether molecules

Using STM topographic imaging and spectroscopy, we have investigated the adsorption of two thioether molecules, 1,2-bis(phenylthio)benzene and (bis(3-phenylthio)-phenyl)sulfane, on noble and transition metal surfaces. The two substrates show nearly antipodal behaviour. Whereas complexes with one or two protruding centres are observed on Au(111), only flat and uniform ad-structures are found on NiAl(110). The difference is ascribed to the possibility of the thioethers to form metal-organic complexes by coordinating lattice-gas atoms on the Au(111), while only the pristine molecules adsorb on the alloy surface. The metal coordination in the first case is driven by the formation of strong Au-S bonds and enables the formation of characteristic monomer, dimer and chain-like structures of the thioethers, using the Au atoms as linkers. A similar mechanism is not available on the NiAl, because no lattice gas develops at this surface at room temperature. Our work demonstrates how surface properties, i.e. the availability of mobile ad-species, determine the interaction of organic molecules with metallic substrates.     

Structural transformation of two-dimensional metal-organic coordination networks driven by intrinsic in-plane compression

The coordination assembly of 1,3,5-trispyridylbenzene with Cu on a Au(111) surface has been investigated by scanning tunneling microscopy under ultrahigh vacuum conditions. An open two-dimensional (2D) metal-organic network of honeycomb structure is formed as the 2D network covers partial surface. Upon the 2D network coverage of the entire surface, further increment of molecular density on the surface results in a multistep nonreversible structural transformation in the self-assembly. The new phases consist of metal-organic networks of pentagonal, rhombic, zigzag, and eventually triangular structures. In addition to the structural change, the coordination configuration also undergoes a change from the two-fold Cu-pyridyl binding in the honeycomb, pentagonal, rhombic and zigzag structures to the three-fold Cu-pyridyl coordination in the triangular structure. As the increment of molecular packing density on the surface builds up intrinsic in-plane compression pressure in the 2D space, the transformation of the structure, as well as the coordination binding mode, is attributed to the in-plane compression pressure. The quantitative structural analysis of the various phases upon molecular density increment allows us to construct a phase diagram of network structures as a function of the in-plane compression.     

单原子分散的Au/Cu(111)表面合金的表面结构与吸附性质

Au-Cu双金属合金纳米颗粒对包括CO氧化和CO2还原等在内的多个反应有较好的催化活性,然而关于其表面性质的研究却相当匮乏。在此工作中,我们通过对低覆盖度的Au/Cu(111)和Cu/Au(111)双金属薄膜退火,制备出了单原子级分散的Au/Cu(111)和Cu/Au(111)合金化表面,并利用高分辨扫描隧道显微镜(STM)和扫描隧道谱(STS)进一步研究了掺杂原子的电子性质及其对CO吸附行为的影响。研究发现,分散在Cu(111)表面的表层和次表层Au单原子在STM上表现出不同衬度。在-0.5 e V附近,前者表现出相较于Cu(111)明显增强的电子态密度,而后者则明显减弱。吸附实验表明表层Au单原子对CO的吸附能力并没有得到增强,甚至会减弱其周围Cu原子的吸附能力。与Au在Cu(111)表面较好的分散相反,Cu原子倾向于钻入Au(111)的次表层,并且形成多原子聚集体。且Cu原子受Au(111)衬底吸电子作用的影响,其对CO的吸附能力明显减弱。这个研究结果揭示了合金表面的微观结构与性质的关联,为进一步阐明Au-Cu双金属催化剂的表面反应机理提供参考。     

On-surface isostructural transformation from a hydrogen-bonded network to a coordination network for tuning the pore size and guest recognition

Rational manipulation of supramolecular structures on surfaces is of great importance and challenging. We show that imidazole-based hydrogen-bonded networks on a metal surface can transform into an isostructural coordination network for facile tuning of the pore size and guest recognition behaviours. Deposition of triangular-shaped benzotrisimidazole (H₃btim) molecules on Au(111)/Ag(111) surfaces gives honeycomb networks linked by double N–H⋯N hydrogen bonds. While the H₃btim hydrogen-bonded networks on Au(111) evaporate above 453 K, those on Ag(111) transform into isostructural [Ag₃(btim)] coordination networks based on double N–Ag–N bonds at 423 K, by virtue of the unconventional metal–acid replacement reaction (Ag reduces H⁺). The transformation expands the pore diameter of the honeycomb networks from 3.8 Å to 6.9 Å, giving remarkably different host–guest recognition behaviours for fullerene and ferrocene molecules based on the size compatibility mechanism.

A hydrogen-bonded network on a Ag(111) surface can transform into an isostructural Ag(i) coordination network, giving drastically different host–guest recognition behaviours.     

Guanine- and potassium-based two-dimensional coordination network self-assembled on Au(111)

In this study, through the choice of the well-known G-K biological coordination system, bioligand-alkali metal coordination has for the first time been brought onto an inert Au(111) surface. Using the interplay between high-resolution scanning tunneling microscopy and density functional theory calculations, we show that the mobile G molecules on Au(111) can effectively coordinate with the K atoms, resulting in a metallosupramolecular porous network that is stabilized by a delicate balance between hydrogen bonding and metal-organic coordination.     

On-Surface Synthesis of Iron Phthalocyanine Using Metal-Organic Coordination Templates

On-surface synthesis provides a convenient route to many kinds of conjugated molecular nanostructures, but it has remained challenging to precisely control the reaction pathway for using multicomponent precursors. Herein, we demonstrate a two-step strategy to synthesize iron phthalocyanine (FePc) molecules using metal-organic coordination for templating by using high-resolution scanning tunnelling microscopy and non-contact atomic force microscopy. In a first step, 1,2,4,5-tetracyanobenzene (TCNB) precursors and Fe atoms self-assembly into Fe(TCNB)₄ coordination complexes on a clean Au(111) surface. The Fe(TCNB)₄ complexes further undergo cyclic tetramerization upon thermal annealing, forming single FePc molecules. We expect that our demonstrated synthetic strategy may shed light on the design and synthesis of two-dimensional extended conjugated systems.     

Ag(111)表面Ag配位结构的分等级组装

表面辅助的金属有机纳米结构因其结构稳定性和潜在应用受到广泛关注。在金属有机纳米结构中,金属原子来源于外部沉积的金属或金属表面原子。外部沉积的金属原子种类多样,取决于目标纳米结构。然而,金属表面原子受限于表面科学常用的金、银和铜单晶金属表面。金属有机纳米结构大多包括Au配位或是Cu配位结构,而只有少量的用表面Ag原子构成。分子金属相互作用的进一步研究有助于预期纳米结构的精确控制形成。至于构建基元,有机分子通过M―C、M―N和M―O键与表面金属原子配位。末端炔反应或者乌尔曼耦合能够实现C―M―C节点的形成。Cu和Au原子能够与含有末端氰基或吡啶基官能团的分子配位形成N―M―N键。另外,表面Ag增原子能够通过Ag―N配位键与酞菁分子配位。然而,M―O配位键的相关研究较少。因此,我们计划使用末端羟基分子与Ag增原子配位形成金属有机配位纳米结构去研究O―Ag节点。我们通过扫描隧道显微镜利用4, 4’-二羟基-1, 1’: 3’, 1’’-三联苯分子(4, 4’-dihydroxy-1, 1’: 3’, 1’’-terphenyl,H3PH)和Ag增原子成功构筑了一系列二维有序纳米结构。在室温下,蒸镀的H3PH分子自组装形成由环氢键连接的密堆积结构。当退火温度提升到330 K,一种新的纳米结构出现了,该结构由O―Ag配位键和氢键共同作用形成。进一步地提升退火温度至420 K,蜂巢结构和共存的二重配位链出现,这两种结构中仅由O―Ag―O键构成。为分析金属分子反应路径和O―Ag―O键的能量势垒,我们对该体系进行密度泛函理论计算。计算结果显示,O―Ag键形成的能量势垒是1.41 eV,小于O―Ag―O节点1.85 eV的能量势垒。这也解释了分等级金属-有机纳米结构形成的原因。我们的实验结果提供了一种利用有机小分子和金属增原子来设计和构筑分等级二维纳米结构的有效方法。     

Directed organization of C70 kagome lattice by titanyl phthalocyanine monolayer template

Controlled deposition of titanyl phthalocyanine (TiOPc) on Ag(111) produces a honeycomb monolayer phase consisting of TiOPc molecules with two distinctive tilt angles. This periodic arrangement of polar molecules is used to direct C(70) growth into low-density 3D films with novel C(70) kagome lattice arrangements. Structural models for the C(70) kagome lattice are determined from layer-by-layer scanning tunneling microscopy images and related to the dipolar TiOPc template and C(70)'s anisotropic polarizability. Molecular templates with designed electrostatic features offer a practical method to control 3D film organization on the nanoscale by harnessing anisotropic molecular interactions at the growth interface.     

Stabilizing gold adatoms by thiophenyl derivatives: a possible route toward metal redispersion

Tris(phenylthio)benzene molecules have been synthesized in order to explore their ability to trap single Au adatoms on an Au(111) surface. The resulting metal-organic complexes have been characterized with low-temperature scanning tunneling microscopy and infrared reflection absorption spectroscopy; possible structure models have been derived from density functional calculations. Upon room temperature deposition, the thiophenyl derivatives form dimer structures, comprising two molecules and six Au adatoms. Below 100 K, isolated molecules are found as well that have trapped up to six Au atoms. On the basis of the experimental results and calculated formation energies of the complexes, we discuss potential applications of the thioethers for the redispersion of metals on a catalyst surface. First experiments performed on Au particle ensembles prepared on alumina thin films suggest that the molecular ligands are indeed able to change the distribution of gold on the oxide surface.     

Diboraperylene Diborinic Acid Self-Assembly on Ag(111)—Kagome Flat Band Localized States Imaged by Scanning Tunneling Microscopy and Spectroscopy

Replacement of sp²-hybridized carbon in polycyclic aromatic hydrocarbons (PAHs) by boron affords electron-deficient π-scaffolds due to the vacant p_z-orbital of three-coordinate boron with the potential for pronounced electronic interactions with electron-rich metal surfaces. Using a diboraperylene diborinic acid derivative as precursor and a controlled on-surface non-covalent synthesis approach, we report on a self-assembled chiral supramolecular kagome network on an Ag(111) surface stabilized by intermolecular hydrogen-bonding interactions at low temperature. Scanning tunneling microscopy (STM) and spectroscopy (STS) reveal a flat band at ca. 0.33 eV above the Fermi level which is localized at the molecule center, in good agreement with tight-binding model calculations of flat bands characteristic for kagome lattices.     

Highly adaptable two-dimensional metal-organic coordination networks on metal surfaces

The formation of extended two-dimensional metal-organic coordination networks (2D-MOCNs) showing high adaptability to surface step edges and structural defects is revealed by scanning tunneling microscopy. Rod-like 4,4'-di-(1,4-buta-1,3-diynyl)-benzoic acid (BDBA) and iron atoms assemble into extended 2D-MOCNs on Au(111) and Ag(100) surfaces. Independent from the chosen substrate and its surface symmetry the MOCN grows continuously over multiple surface terraces through mutual in-phase structure adaptation of network domains at step edges as well as on terraces. The adaptability of the MOCNs is mainly ascribed to the high degree of conformational flexibility of the butadiynyl functionality of the ligand. Despite their flexibility, the MOCNs exhibit considerable robustness against annealing at high temperatures. The findings show that mesoscale self-assembled functional architectures with a high degree of substrate error tolerance can be realized with metal coordination networks.     

Competitive Metal Coordination of Hexaaminotriphenylene on Cu(111) by Intrinsic Copper Versus Extrinsic Nickel Adatoms

The interplay between the self-assembly and surface chemistry of 2,3,6,7,10,11-hexaaminotriphenylene (HATP) on Cu(111) was complementarily studied by high-resolution scanning tunneling microscopy (STM) and X-ray photoelectron spectroscopy (XPS) under ultra-high vacuum conditions. To shed light on the competitive metal coordination, comparative experiments were carried out on pristine and nickel-covered Cu(111). Directly after room-temperature deposition of HATP onto pristine Cu(111), self-assembled aggregates were observed by STM, and XPS results indicated still protonated amino groups. Annealing up to 200 °C activated the progressive single deprotonation of all amino groups as indicated by chemical shifts of both the N 1s and C 1s core levels in the XP spectra. This enabled the formation of topologically diverse π–d conjugated coordination networks with intrinsic copper adatoms. The basic motif of these networks was a metal–organic trimer, in which three HATP molecules were coordinated by Cu₃ clusters, as corroborated by the accompanying density functional theory (DFT) simulations. Additional deposition of more reactive nickel atoms resulted in both chemical and structural changes with deprotonation and formation of bis(diimino)–Ni bonded networks already at room temperature. Even though fused hexagonal metal-coordinated pores were observed, extended honeycomb networks remained elusive, as tentatively explained by the restricted reversibility of these metal–organic bonds.     

Electronic structures of one-dimensional metal-molecule hybrid chains studied using scanning tunneling microscopy and density functional theory

The electronic structures of self-assembled hybrid chains comprising Ag atoms and organic molecules were studied using scanning tunneling microscopy (STM) and spectroscopy (STS) in parallel with density functional theory (DFT). Hybrid chains were prepared by catalytic breaking of Br-C bonds in 4,4″-dibromo-p-terphenyl molecules, followed by spontaneous formation of Ag-C bonds on Ag(111). An atomic model was proposed for the observed hybrid chain structures. Four electronic states were resolved using STS measurements, and strong energy dependence was observed in STM images. These results were explained using first-principles calculations based on DFT.     

谢尔宾斯基三角分形结构的STM研究

分形结构因其特殊的数学和美学意义受到科学家们长期以来的广泛关注。化学家更是试图利用共价键和配位键等来合成各类分子分形结构,但由于溶解性的限制,始终无法实现高级别、无缺陷的分子分形结构的构筑。最近我们采用超高真空表面制备方法,成功获得了基于卤键与配位键的谢尔宾斯基三角分形结构,并使用扫描隧道显微镜(STM)对其生长机制进行了研究。4, 4′′′-二溴-1, 1′:3′, 1′′:4′′, 1′′′-四联苯分子在Ag(111)表面通过自组装形成了一系列无缺陷卤键分形结构。由于卤键作用较弱,该结构只能稳定在液氮温度以下。在Au(111)表面共沉积4, 4′′-二氰基-1, 1′:3′, 1′′-三联苯分子与铁原子可以制备出更稳定的配位分形结构。密度泛函理论计算揭示了分形结构的成像机制。蒙特卡洛计算表明,表面三节点的形成对谢尔宾斯基三角分形结构的生长具有重要意义。     

Highly ordered C60 monolayer self-assembled by using an iodine template on an Au(111) surface in solution

An iodine-modified Au(111) surface, (I/Au(111)), was used as a substrate to prepare a C 60 adlayer by self-organization in a benzene solution. A highly ordered C 60 adlayer was successfully prepared due to the moderate C 60-I/Au(111) interaction. Two lattice structures, (2 square root 3 x 2 square root 3) R30 degrees and p(2 x 2), were imaged for this C 60 adlayer. For the first structure, a featureless ball-like molecular shape was imaged, ascribed to the molecular rotation resulting from a symmetrical location between C 60 and iodine atoms. For the p(2 x 2) structure, the asymmetrical location of C 60 with respect to the iodine atoms freezes the C 60 molecules on the substrate, leading to a clear image of intramolecular structure. The intermediate iodine atoms in the C 60/I/Au(111) adlayer can be desorbed by electrochemically reduction without significantly affecting the ordering of the C 60 adlayer. However, the internal pattern of C 60 disappears in the absence of iodine.     

Sierpiński triangles formed by molecules with linear backbones on Au(111)

Sierpiński triangle fractal crystals are formed by Co and molecules with linear backbones on Au(111).     

密度泛函理论研究十二烷硫醇在Au(111)面上的吸附

采用第一性原理方法研究了十二烷硫醇(C₁₂H₂₅SH)分子在Au(111)面上未解离和解离吸附的结构、能量和吸附性质,在此基础上分析判断长链硫醇分子在Au(111)面吸附时S―H键的解离, 以及分子链长度对吸附结构和能量的影响. 计算了S原子在不同位置以不同方式吸附的系列构型, 结果表明在S―H键解离前和解离后,均存在两种可能的表面结构, 直立吸附构型和平铺吸附构型; 未解离的C₁₂H₂₅SH分子倾向于吸附在top位, 吸附能为0.35-0.38 eV; H原子解离后C₁₂H₂₅S基团倾向于吸附在bri-fcc位, 吸附能量为2.01-2.09 eV. 比较分析未解离吸附和解离吸附, 发现C₁₂H₂₅SH分子未解离吸附相较于解离吸附要稳定, 未解离吸附属于弱化学吸附.局域电子态密度和差分电荷密度分析进一步验证了S―H解离后S原子与表面之间成键的数目增加, 而且键合更强. 同时我们发现长链硫醇的吸附能量较短链硫醇的吸附能量略大, S原子与表面Au原子之间的距离略小.     

Chiral structures of 6,12-dibromochrysene on Au(111) and Cu(111) surfaces

Nanoscale low-dimensional chiral architectures are increasingly receiving scientific interest, because of their potential applications in many fields such as chiral recognition, separation and transformation. Using 6,12-dibromochrysene (DBCh), we successfully constructed and characterized the large-area two-dimensional chiral networks on Au(111) and one-dimensional metal-liganded chiral chains on Cu(111) respectively. The reasons and processes of chiral transformation of chiral networks on Au(111) were analyzed. We used scanning tunneling spectroscopy (STS) to analyze the electronic state information of this chiral structure. This work combines scanning tunneling microscopy (STM) with non-contact atomic force microscopy (nc-AFM) techniques to achieve ultra-high-resolution characterization of chiral structures on low-dimensional surfaces, which may be applied to the bond analysis of functional nanofilms. Density functional theory (DFT) was used to simulate the adsorption behavior of the molecular and energy analysis in order to verify the experimental results.     

Hydration processes of electrolyte anions and cations on pt(111), Ir(111), Ru(001) and Au(111) surfaces: coadsorption of water molecules with electrolyte ions

Water adsorption on Pt( 111) and Ru(001) treated with oxygen, hydrogen chloride and sodium atom at 20 K has been studied by Fourier transform infrared spectroscopy, scanning tunneling microscopy and surface X-ray diffraction. Water molecules chemisorb predominantly on the sites of the electronegative additives, forming hydrogen bonds. Three types of hydration water molecules coordinate to an adsorbed Na atom through an oxygen lone pair. In contrast, water molecules adsorb on electrode surfaces in a simple way in solution. In 1 mM CuSO4 + 0.5 M H2SO4 solution on an Au(111) electrode surface, water molecules coadsorb not only with sulfuric acid anions through hydrogen bonding but also with copper, over wide potential ranges. In the first stage of underpotential deposition (UPD), each anion is accommodated by six copper hexagon (honeycomb) atoms on which water molecules dominate. At any UPD stage water molecules interact with both the copper atom and sulfuric acid anions on the Au(111) surface. Water molecules also coadsorb with CO molecules on the surface of 2 x 2-2CO-Ru(001). All of the hydration water molecules chemisorb weakly on the surfaces. There appears to be a correlation between the orientation of hydrogen bonding water molecules and the electrode potential.     

Geometric and Electronic Behavior of C60 on PTCDA Hydrogen Bonded Network

Self-assembled supramolecular networks are promising spacer layer for electronic decoupling from the metal substrate.However,the mechanism behind of how the intrinsic electronic structure of spacer layers affects the adsorbate is still unclear.Here a hydrogen bonded network composed of n-type semiconducting molecules 3,4,9,10-perylene-tetracarboxylic-dianhydride(PTCDA)is prepared under ultra-high vacuum to serve as a spacer layer for functional organics C60 on Au(111).The geometric and electronic information of C60 was investigated by scanning tunneling microscopy and scanning tunneling spectroscopy(STM/STS)at 5 K.Effective decoupling from the metal surface yields an energy gap of 3.67 eV for C602nd,merely considering the HOMO-LUMO peak separation.The broadening of resonance peaks in STS measurements however indicates unneglected interlayer interactions in this hetero-organic system.Moreover,we scrutinize the nucleation sites of C60 on PTCDA layer and attribute this to the decreased diffusion capability on a less dense molecular arrangement possessing inhomogeneous spatial distribution of unoccupied molecular orbitals.