A DFT Study on Intramolecular Hydrogen Bond in Substituted Catechols and Their Radicals

Density functional theory(DFT)at B3LYP/6-31G(d,p) level was employed to calculate intramolecular hydrogen bond enthalpies (H1HB),O-H charge differencces,O-H bond lengths and bond orders for various substituted catechols and their radicals generated after H-abstraction.It was found that although the charge difference between hydrogen-bonded H and O played a role in determining H1HB,H1HB was mainly governed by the hydrogen bond length.As the oxygen-centedred radiocal has great tendency to form a chemical bond with the H atom,hydrogen bond lengths in catechloic radicals are systematically shorter than those in catechlos,hence,the H1HB for the former are higher than those for the latter.     

Solvent effects on glycine II. Water-assisted tautomerization

The water-assisted tautomerization of glycine has been investigated at the B3LYP/6-31+G** level using supermolecules containing up to six water molecules as well as considering a 1:1 glycine-water complex embedded in a continuum. The conformations of the tautomers in this mechanism do not display an intramolecular H bond, instead the functional groups are bridged by a water molecule. The replacement of the intramolecular H bond by the bridging water reduces the polarity of the N-H bond in the zwitterion and increases that of the O-H bond in the neutral, stabilizing the zwitterion. Both the charge transfer effects and electrostatic interactions stabilize the nonintramolecularly H-bonded zwitterion conformer over the intramolecularly hydrogen bonded one. The nonintramolecularly H-bonded neutral is favored only by charge transfer effects. Although there is no strong evidence whether the intramolecularly hydrogen bonded or non hydrogen bonded structures are favored in the bulk solution represented as a dielectric continuum, it is likely that the latter species are more stable. The free energy of activation of the water-assisted mechanism is higher than the intramolecular proton transfer channel. However, when the presumably higher conformational energy of the zwitterion reacting in the intramolecular mechanism is taken into account, both mechanisms are observed to compete. The various conformers of the neutral glycine may form via multiple proton transfer reactions through several water molecules instead of a conformational rearrangement.     

ab-Initio Study of Hydrogen Bond Networks in 1,2,3-Triazole Phases

The research in storage and conversion of energy is an everlasting process. The use of fuel cells is very tempting but up to now there are still several conceptual challenges to overcome. Especially, the requirement of liquid water causes difficulties due to the temperature limit. Therefore, imidazoles and triazoles are increasingly investigated in a manifold of experimental and theoretical publications as they are both very promising in overcoming this problem. Recently, triazoles were found to be superior to imidazoles in proton conduction. An ab-initio molecular dynamics simulation of pure triazole phases for investigating the behavior of both tautomer species of the triazole molecule has never been done. In this work, we investigate the structural and dynamical properties of two different solid phases and the liquid phase at two different temperatures. We are able to show how the distinct tautomers contribute to the mechanism of proton conduction, to compute dynamical properties of the four systems and to suggest a mechanism of reorientation in solid phase.     

Triel Bond Formed by Malondialdehyde and Its Influence on the Intramolecular H-Bond and Proton Transfer

Malondialdehyde (MDA) engages in a triel bond (TrB) with TrX₃ (Tr = B and Al; X = H, F, Cl, and Br) in three modes, in which the hydroxyl O, carbonyl O, and central carbon atoms of MDA act as the electron donors, respectively. A H···X secondary interaction coexists with the TrB in the former two types of complexes. The carbonyl O forms a stronger TrB than the hydroxyl O, and both of them are better electron donors than the central carbon atom. The TrB formed by the hydroxyl O enhances the intramolecular H-bond in MDA and thus promotes proton transfer in MDA-BX₃ (X = Cl and Br) and MDA-AlX₃ (X = halogen), while a weakening H-bond and the inhibition of proton transfer are caused by the TrB formed by the carbonyl O. The TrB formed by the central carbon atom imposes little influence on the H-bond. The BH₂ substitution on the central C-H bond can also realise the proton transfer in the triel-bonded complexes between the hydroxyl O and TrH₃ (Tr = B and Al).     

取代基效应对褐煤模型化合物离解焓影响的理论研究

为了探究褐煤热解过程中氧桥键C-O均裂这一重要反应, 选取α-O-4和β-O-4类结构单元作为褐煤模型化合物, 运用不同密度泛函计算了部分模型化合物中C-O的离解焓, 并以CBS-QB3作为理论基准值进行比较, 最后选取M05-2X进行离解焓计算. 结果显示, 对于选定的α-O-4和β-O-4类模型化合物, 其平均离解焓分别为51.0 kcal/mol和66.1 kcal/mol. 周围取代环境能显著影响C-O离解焓, 芳环上存在给电子基团(OH, OCH₃和CH₃)能降低C-O离解焓, 而吸电子基团COOH则能增加其离解焓. 然后深层次分析了取代基效应对C-O离解焓的影响. 此外, 分子内氢键的形成对离解焓也有很大的影响. C-O的离解焓与其键长没有特定的相关性, 不能简单的通过C-O键长来预测其离解焓.     

Molecular Tailoring Approach for the Estimation of Intramolecular Hydrogen Bond Energy

Hydrogen bonds (HBs) play a crucial role in many physicochemical and biological processes. Theoretical methods can reliably estimate the intermolecular HB energies. However, the methods for the quantification of intramolecular HB (IHB) energy available in the literature are mostly empirical or indirect and limited only to evaluating the energy of a single HB. During the past decade, the authors have developed a direct procedure for the IHB energy estimation based on the molecular tailoring approach (MTA), a fragmentation method. This MTA-based method can yield a reliable estimate of individual IHB energy in a system containing multiple H-bonds. After explaining and illustrating the methodology of MTA, we present its use for the IHB energy estimation in molecules and clusters. We also discuss the use of this method by other researchers as a standard, state-of-the-art method for estimating IHB energy as well as those of other noncovalent interactions.     

Influence of the Intramolecular Hydrogen Bond on the Fluorescence of 2-ortho-Aminophenyl Pyridines

The dynamic nature of excited-state intramolecular proton transfer (ESIPT) and its effect on emission spectra is an attractive strategy to create multi-emissive dyes. Here we describe the behavior of a series of hydrogen-bonded triphenylpyridines with a set of donor–acceptor combinations that allowed us to perceive the influence of each substitution on the photophysical properties of the dyes. The susceptibility of these ESIPT moieties to pH variations was also studied, elucidating that the level of protonation had a significant effect on the emission color. The assignment of each emission band was made by using DFT and td-DFT calculations that were in agreement with the experimental results. This study emphasizes the versatility of triphenylpyridines that can be synthesized effortlessly with a logical and independent C-2, C-4 and C-6 substitution in order to have the desired ESIPT modulation and subsequent multi-emission response.     

Nature of the Hydrogen Bond Enhanced Halogen Bond

The factors responsible for the enhancement of the halogen bond by an adjacent hydrogen bond have been quantitatively explored by means of state-of-the-art computational methods. It is found that the strength of a halogen bond is enhanced by ca. 3 kcal/mol when the halogen donor simultaneously operates as a halogen bond donor and a hydrogen bond acceptor. This enhancement is the result of both stronger electrostatic and orbital interactions between the XB donor and the XB acceptor, which indicates a significant degree of covalency in these halogen bonds. In addition, the halogen bond strength can be easily tuned by modifying the electron density of the aryl group of the XB donor as well as the acidity of the hydrogen atoms responsible for the hydrogen bond.     

Intramolecular Hydrogen Bonds in Low‐Molecular‐Weight Polyethylene Glycol

We used static DFT calculations to analyze, in detail, the intramolecular hydrogen bonds formed in low‐molecular‐weight polyethylene glycol (PEG) with two to five repeat subunits. Both red‐shifted O?H???O and blue‐shifting C?H???O hydrogen bonds, which control the structural flexibility of PEG, were detected. To estimate the strength of these hydrogen bonds, the quantum theory of atoms in molecules was used. Car–Parrinello molecular dynamics simulations were used to mimic the structural rearrangements and hydrogen‐bond breaking/formation in the PEG molecule at 300 K. The time evolution of the H???O bond length and valence angles of the formed hydrogen bonds were fully analyzed. The characteristic hydrogen‐bonding patterns of low‐molecular‐weight PEG were described with an estimation of their lifetime. The theoretical results obtained, in particular the presence of weak C?H???O hydrogen bonds, could serve as an explanation of the PEG structural stability in the experimental investigation.     

Quantum Study on the Hydrogen Bonding Interaction of Luteolin-（CH_3OH）_n

The optimized geometries and vibration frequencies of luteolin,methanol and luteolin-(CH3OH)n complexes have been investigated by density functional theory using B3LYP method.Four stable luteolin-CH3OH complexes,six stable luteolin-(CH3OH)2 complexes and four stable luteolin-(CH3OH)3 complexes have been obtained.The theories of atoms in molecules(AIM) and natural bond orbital(NBO) have been used to analyze the hydrogen bonds of these compounds,and their interaction energies corrected by basis set superposition error are between-8.046 and-76.124 kJ/mol.The calculation results indicate strong hydrogen bonding interactions in the luteolin-(CH3OH)n complexes.Then the nuclear magnetic resonance(NMR) and electronic absorption spectrum of luteolin have been calculated,and the results are in agreement with the experimental data.     

DFT和热力学研究氢键协同效应及对关联1H NMR的影响

用DFT方法在B3LYP／6—311 G(d,p)水平下研究了甲醇线性和环状分子簇．对于不同大小的分子簇之间定义了协同因子,计算得到的协同因子可以验证氢键的强协同效应,环状分子簇之间的协同效应远远大于线性分子簇,做为理论验证和比较,热力学模型分别采用含氢键缔合的格子流体状态方程(LFHB),以及含氢键协同效应的LFHB,关联醇一惰性体系的^1H核磁共振化学位移．考虑协同效应的关联结果优于原始的LFHB,比较量子化学计算的和热力学模型中采用的协同因子,认为甲醇和乙醇在溶液中更可能大部分以线性缔合形式存在。     

Study on the Intramolecular Hydrogen Bonds of Dibenzofurans, Xanthones and Anthraquinones with One or Two Positions Substituted by Hydroxyls

<正>The thermodynamic properties of dibenzofurans (DFs), xanthones (XTs) and an- thraquinones (AQs) with one and two positions substituted with hydroxyls in the ideal gas state at 298.15 K and 1.013×10~5 pa were calculated at the B3LYP/6-311G~* level using Gaussian 03 program. The isodesmic reactions were designed to calculate the standard free energy of formation (Δ_fG~e). Three types of hydrogen bonds exist in the three kinds of chemicals and their bond energies were ascertained as 7-15, 15-23 and 49-58 kJ·mol~(-1) respectively by comparing the Δ_fG~e values. Electronic density topology analysis was applied to validate the strength of bond.     

ESIPT-regulated Mechanoresponsive Luminescence Process byIntroducing Intramolecular Hydrogen Bond in NaphthalimideDerivatives#br#

Herein, two compounds, 4-2′-hydroxybenzylidenehydrazinyl-N-butyl-1,8-naphthalimide(BN-1) and 4-benzylidenehydra-zinyl-N-butyl-1,8-naphthalimide(BN-2), were synthesized to explore the hydrogen bonding effect on mechanoresponsive luminescent(MRL). The results showed that compound BN-1 exhibited strong emission in solution and solid-state compared with compound BN-2. After grinding, the emission intensity of compound BN-1 sharply decreased by as much as 15 times with an obvious red-shift from 552 nm to 577 nm. The control compound BN-2, by contrast, did not change so much before and after grinding. Single crystal analysis suggests that BN-1 molecule formed strong intramolecular interaction via ―N=N···H―O hydrogen bond with a distance of 0.2632 nm. An excited-state intramolecular proton transfer(ESIPT) based fluorophore featured this intramolecular hydrogen bond. The intramolecular hydrogen bond as well as other intermolecular interactions can rigidify the molecular conformation of compound BN-1 in solid-state, and thus suppress the nonradiative pathways, resulting in strong emission. These intra- and intermolecular interactions were destroyed by mechanical stimuli, accompanied by molecular conformation change that decreases the luminescence and blocks the ESIPT process. The MRL process was also demonstrated by scanning electron microscopy and powder X-ray diffraction. The molecular stacking mode changed from crystalline to a disordered amorphous state after grinding.     

1,2,4-三氮杂苯-(H2O)n复合物氢键相互作用的密度泛函理论研究

用密度泛函理论方法在B3LYP/6-31++G**水平上对1,2,4-三氮杂苯-(H₂O)_n (n＝1, 2, 3)氢键复合物的基态进行了结构优化和能量计算, 结果表明复合物之间存在较强的氢键作用, 所有稳定复合物结构中形成一个N…H—O氢键并终止于弱O…H—C氢键的氢键水链的构型最稳定. 同时, 用含时密度泛函理论方法(TD-DFT)在TD-B3LYP/6-31++G**水平上计算了1,2,4-三氮杂苯单体及其氢键复合物的单重态第一¹(n, π^*)垂直激发能.     

A Mixed Quantum-Classical Approach for Computing Effects of Intramolecular Motion on the Low-Barrier Hydrogen Bond

The fractionation factor is defined as the equilibrium constant for the reaction: R – H + DOH R – D + HOH. Of interest are values of fractionation factors for reactions where reactants and/or products form intramolecular low-barrier hydrogen bonds. Experimentally measured isotopic fractionation factors are usually interpreted via a one-dimensional potential energy surface along the intrinsic proton hydrogen bond coordinate. Such a one-dimensional picture cannot be completely correct. Intramolecular motions, such as vibrations and librations, can modulate the underlying potential energy surface along the hydrogen bond coordinate and thus affect the isotopic fractionation factor. We have recently generated a picture of the motion of the proton in a low-barrier hydrogen bond as taking place in an effective single-dimensional potential, which we term the potential of mean force (PMF). In this paper, we compute the PMF for a molecule with an intramolecular hydrogen bond in order to quantify the effect of intramolecular motions on the fractionation factor. The PMF and isotopic fractionation factor are computed with a combination of high-level density functional theory and molecular dynamics simulations.     

碳氟键均裂解离能的密度泛函理论研究

运用6种密度泛函方法(B3LYP, B3P86, B3PW91, PBE1PBE, MPW1B95, MPW1K)对15个含氟有机化合物的碳氟键均裂解离能进行理论计算, 得到的理论值与实验值比较, 发现B3P86方法用于碳氟键均裂解离能的计算相对可靠. 使用验证后的理论方法对含氟杂环有机化合物和卤氟烃中的碳氟键均裂解离能进行了预测和分析, 并进一步讨论了α-取代基效应以及Hammett型取代基效应对碳氟键均裂解离能的影响.     

Strength of Intramolecular Hydrogen Bonds

The concept of resonance-assisted hydrogen bonds(RAHBs)highlights the synergistic interplay between theπ-resonance and hydrogen bonding interactions.This concept has been well-accepted in academia and is widely used in practice.However,it has been argued that the seemingly enhanced intramolecular hydrogen bonding(IMHB)in unsaturated compounds may simply be a result of the constraints imposed by theσ-skeleton framework.Thus,it is crucial to estimate the strength of IMHBs.In this work,we used two approaches to probe the resonance effect and estimate the strength of the IMHBs in the two exemplary cases of the enol forms of acetylacetone and o-hydroxyacetophenone.One approach is the block-localized wavefunction(BLW)method,which is a variant of the ab initio valence bond(VB)theory.Using this approach,it is possible to derive the geometries and energetics with resonance shut down.The other approach is Edmiston’s truncated localized molecular orbital(TLMO)technique,which monitors the energy changes by removing the delocalization tails from localized molecular orbitals.The integrated BLW and TLMO studies confirmed that the hydrogen bonding in these two molecules is indeed enhanced byπ-resonance,and that this enhancement is not a result ofσconstraints.     

纯水溶液中的氢键交换反应路径

利用分子动力学模拟方法对纯水溶液的氢键转化动力学性质进行了深入的微观探讨,溶液中非氢键构型为寿命较短(0.1～0.2 ps)的过渡态构型,我们发现氢键交换通过两种过渡构型完成,氢键角度扭曲激发后与氢键第一壳层水分子沿路径1交换,氢键径向拉伸激发后与氢键第二壳层水分子沿路径2交换,过渡态路径的选择具有温度依赖性.氢键转化需在旧氢键受体氢键过量和新氢键受体氢键不足,同时满足交换反应空间结构要求下才能完成.氢键交换反应对水分子平动和转动行为起着决定作用.     

4-羟甲基吡啶－水红移氢键的密度泛函理论研究

使用密度泛函理论B3LYP方法和6-311++G**基函数对4-羟甲基吡啶与水形成的1:1和1:2（摩尔比）氢键复合物进行了理论计算研究,分别得到稳定的4-羟甲基吡啶－H₂O和4-羟甲基吡啶－(H₂O)₂氢键复合物3个和8个。经基组重叠误差和零点振动能校正后,最稳定的1:1和1:2氢键复合物的相互作用能分别为-20.536和-44.246 kJ/mol。振动分析显示O-H···N(O)氢键的形成使复合物中O-H键对称伸缩振动频率红移(减小)。自然键轨道分析表明,4-羟甲基吡啶与水形成最稳定的1:1和1:2氢键复合物时,分子间电荷转移分别为0.02642 e 和0.03813 e 。含时密度泛函理论TD-B3LYP/ 6-311++G**计算显示,相对于4-羟甲基吡啶单体分子,氢键H-OH···N和H-OH···OH的形成分别使最大吸收光谱波长兰移8~16纳米和红移4~11纳米。