Modulating the Binding of Polycyclic Aromatic Hydrocarbons Inside a Hexacationic Cage by Anion–π Interactions

We report the template‐directed synthesis of BlueCage⁶⁺, a macrobicyclic cyclophane composed of six pyridinium rings fused with two central triazines and bridged by three paraxylylene units. These moieties endow the cage with a remarkably electron‐poor cavity, which makes it a powerful receptor for polycyclic aromatic hydrocarbons (PAHs). Upon forming a 1:1 complex with pyrene in acetonitrile, however, BlueCage?6 PF₆ exhibits a lower association constant K_a than its progenitor ExCage?6 PF₆. A close inspection reveals that the six PF₆^? counterions of BlueCage⁶⁺ occupy the cavity in a fleeting manner as a consequence of anion–π interactions and, as a result, compete with the PAH guests. This conclusion is supported by a one order of magnitude increase in the K_a value for pyrene in BlueCage⁶⁺ when the PF₆^? counterions are replaced by much bulkier anions. The presence of anion–π interactions is supported by X‐ray crystallography, and confirms the presence of a PF₆^? counterion inside its cavity.     

Surface plasmon resonance study on binding interactions of multivalent cyclophane hosts with immobilized guests

Guest‐binding affinities of water‐soluble cyclophane heptadecamer (1) and pentamer (2) with immobilized guests such as 1‐pyrenylmethylamine (PMA) and 2‐(1‐ naphthyl)ethylamine (NEA) were investigated by surface plasmon resonance (SPR) measurements. As a typical example, the binding constants (K) for 1 and 2 with the immobilized PMA as a guest were evaluated to be 2.5 × 10⁷ and 2.7 × 10⁶ M^?1, respectively, and were much larger than that of a monocyclic reference cyclophane (K, 2.5 × 10⁴ M^?1). Interestingly, in the complexation of 1 and 2 with the immobilized guests, more favorable association and dissociation rate constant values (k_a and k_d, respectively) were observed in comparison with those for the monocyclic cyclophane, reflecting multivalent effects in macrocycles. The multivalent effects in macrocycles as well as molecular recognition abilities of the cyclophane oligomers were confirmed even when the guest molecules were immobilized on SPR sensor chip surfaces. Copyright © 2009 John Wiley & Sons, Ltd.     

A photoswitchable rotaxane with a folded molecular thread

Novel [2]rotaxanes containing the tetracationic cyclophane cyclobis(paraquat-4,4-biphenylene) and a dumbbell-shaped molecular thread incorporating a photoactive diarylcycloheptatriene station as well as a photoinactive anisol station have been synthesized with yields of nearly 50 % by the alkylative endcapping method. The rotaxane was transformed into the related rotaxane incorporating a diaryl tropylium unit by electrochemical oxidation. The precursor of the cycloheptatrienyl rotaxane, the related pseudorotaxane, and the rotaxanes incorporating the diarylcycloheptatriene and the corresponding tropylium unit were characterized by (1)HNMR spectroscopy and UV/Vis spectroscopy. According to the NMR spectra, both the cycloheptatriene and the tropylium rotaxane possess a folded conformation enabling the tetracationic cyclophane to interact with two stations. The diarylcycloheptatriene station is incorporated inside the cavity of the cyclophane and the anisol station resides alongside the bipyridinium unit of the cyclophane. In contrast, the anisol station is inside the cyclophane in the tropylium rotaxane. The exchange between both conformations can be achieved by introducing the methoxy leaving group into the cycloheptatriene ring; the tropylium rotaxane is generated by photoheterolysis of this methoxy-substituted rotaxane, which reacts thermally back to the cycloheptatriene rotaxane, thus closing the switching cycle. These induced conformational changes achieve a so-called molecular machine.     

Tri- and tetraurea piperazine cyclophanes: synthesis and complexation studies of preorganized and folded receptor molecules

A series of symmetrical tri‐ and tetrameric N‐ethyl‐ and N‐phenylurea‐functionalized cyclophanes have been prepared in nearly quantitative yields (86–99 %) from the corresponding tri‐ and tetraamino‐functionalized piperazine cyclophanes and ethyl or phenyl isocyanates. Their conformational and complexation properties have been studied by single‐crystal X‐ray diffraction, variable‐temperature NMR spectroscopy, and ESI‐MS analysis. The rigid 27‐membered trimeric cyclophane skeleton assisted by a seam of intramolecular hydrogen bonds results in a preorganized ditopic recognition site with an all‐syn conformation of the urea moieties that, complemented by a lipophilic cavity of the cyclophane, binds molecular and ionic guests as well as ion pairs. The all‐syn conformation persists in acidic conditions and the triprotonated triurea cyclophane binds an unprecedented anion pair, H₂PO₄^????HPO₄^2?, in the solid state. The tetra‐N‐ethylurea cyclophane is less rigid and demonstrates an induced‐fit recognition of diisopropyl ether in the solid state. The guest was encapsulated within the lipophilic interior of a quasicapsule, formed by intramolecular hydrogen‐bond‐driven folding of the 36‐membered cyclophane skeleton. In the gas phase, the essential role of the urea moieties in the binding was demonstrated by the formation of monomeric 1:1 complexes with K⁺, TMA⁺, and TMP⁺ as well as the ion‐pair complexes [KI+K]⁺, [TMABr+TMA]⁺ and [TMPBr+TMP]⁺. In the positive‐mode ESI‐MS analysis, ion‐pair binding was found to be more pronounced with the larger tetraurea cyclophanes. In the negative mode, owing to the large size of the binding site, a general binding preference towards larger anions, such as the iodide, over smaller anions, such as the fluoride, was observed.     

Reversible Guest Uptake/Release by Redox‐Controlled Assembly/Disassembly of a Coordination Cage

Controlling the guest expulsion process from a receptor is of critical importance in various fields. Several coordination cages have been recently designed for this purpose, based on various types of stimuli to induce the guest release. Herein, we report the first example of a redox‐triggered process from a coordination cage. The latter integrates a cavity, the panels of which are based on the extended tetrathiafulvalene unit (exTTF). The unique combination of electronic and conformational features of this framework (i.e. high π‐donating properties and drastic conformational changes upon oxidation) allows the reversible disassembly/reassembly of the redox‐active cavity upon chemical oxidation/reduction, respectively. This cage is able to bind the three‐dimensional B₁₂F₁₂^2? anion in a 1:2 host/guest stoichiometry. The reversible redox‐triggered disassembly of the cage could also be demonstrated in the case of the host–guest complex, offering a new option for guest‐delivering control.     

Modular Synthesis and Dynamics of a Variety of Donor–Acceptor Interlocked Compounds Prepared by Click Chemistry

A series of donor–acceptor [2]‐, [3]‐, and [4]rotaxanes and self‐complexes ([1]rotaxanes) have been synthesized by a threading‐followed‐by‐stoppering approach, in which the precursor pseudorotaxanes are fixed by using Cu^I‐catalyzed Huisgen 1,3‐dipolar cycloaddition to attach the required stoppers. This alternative approach to forming rotaxanes of the donor–acceptor type, in which the donor is a 1,5‐dioxynaphthalene unit and the acceptor is the tetracationic cyclophane cyclobis(paraquat‐p‐phenylene), proceeds with enhanced yields relative to the tried and tested synthetic strategies, which involve the clipping of the cyclophane around a preformed dumbbell containing π‐electron‐donating recognition sites. The new synthetic approach is amenable to application to highly convergent sequences. To extend the scope of this reaction, we constructed [2]rotaxanes in which one of the phenylene rings of the tetracationic cyclophane is perfluorinated, a feature which significantly weakens its association with π‐electron‐rich guests. The activation barrier for the shuttling of the cyclophane over a spacer containing two triazole rings was determined to be (15.5±0.1) kcal mol^?1 for a degenerate two‐station [2]rotaxane, a value similar to that previously measured for analogous degenerate compounds containing aromatic or ethylene glycol spacers. The triazole rings do not seem to perturb the shuttling process significantly; this property bodes well for their future incorporation into bistable molecular switches.     

Synthesis of a polypseudorotaxane, polyrotaxane, and polycatenane using ‘click’ chemistry

The synthesis of a polypseudorotaxane, polyrotaxane, and polycatenane containing the electron-deficient cyclophane cyclobis(paraquat-p-phenylene) (CBPQT⁴⁺) subunit in the side chain is described. These interlocked supramolecular polymers have been prepared from an azide-functionalized polystyrene derivative and an acetylene-functionalized [2]rotaxane, [2]catenane and their parent tetracationic cyclophane via Cu(I)-catalyzed 1,3 dipolar cycloadditions (‘click chemistry’). The synthesis and characterization of the polymers and intermediates has been described using IR, ¹H NMR, UV spectroscopies, and voltammetry. We have shown that the CBPQT⁴⁺ unit of the side chain polystyrene derivative has the ability to reversibly undergo complexation with a complementary dialkoxynaphthalene derivative.     

Cyclophane-lectin Conjugates as a New Class of Water-soluble Host

A conjugate composed of tetraaza[6.1.6.1]paracyclophane bearing carboxylic acids and lectin, a carbohydrate binding protein, was prepared. The specific saccharide-binding abilities as well as the secondary structural features of the lectin were not disturbed, when the cyclophane were covalently bound to the lectin. The conjugate was found to act as a water-soluble host for inclusion of anionic guest molecules such as 6-p-toluidino-naphthalene-2-sulfonate (TNS) and 8-anilinonaphthalene-1-sulfonate (ANS) in aqueous acetate buffer (pH 4.0) with binding constants of 4.2 × 10⁴ and 1.5 × 10⁴ dm³ mol⁻¹, respectively. The obtained binding constants were much larger than those by untethered water-soluble cyclophane. A highly desolvated microenvironment was provided by the cyclophane cavity on the protein surfaces so that the tight host–guest interaction, which brought about the marked motional repression of the entrapped guests, became effective. The conjugate also showed molecular discrimination capabilities toward the anionic guests through electrostatic repulsion mechanism originating from acid-dissociation equilibrium of carboxylic acids of the cyclophane branches.     

Quadruple Switching of Pleated Foldamers of Tetrathiafulvalene–Bipyridinium Alternating Dynamic Covalent Polymers

Two dynamic covalent polymers P1 and P2 were prepared by alternately linking electron‐rich tetrathiafulvalene (TTF) and electron‐deficient bipyridinium (BIPY²⁺) through hydrazone bonds. In acetonitrile, the polymers were induced by intramolecular donor–acceptor interactions to form pleated foldamers, which unfolded upon oxidation of the TTF units to the radical cation TTF^.+. Reduction of the BIPY²⁺ units to BIPY^.+ led to the formation of another kind of pleated secondary structures, which are stabilized by intramolecular dimerization of the BIPY^.+ units. The diradical dicationic cyclophane cyclobis(paraquat‐p‐phenylene) (CBPQT^2(.+)) could further force the folded structures to unfold by including the BIPY^.+ units of the polymers. Upon oxidation of the BIPY^.+ units of the cyclophane and polymers to BIPY²⁺, the first folded state was regenerated. Switching or conversion between the four conformational states was confirmed by UV/Vis spectroscopic experiments.     

Determining Repulsion in Cyclophane Cages

Superphane, i.e., [2.2.2.2.2.2](1,2,3,4,5,6)cyclophane, is a very convenient molecule in studying the nature of guest⋯host interactions in endohedral complexes. Nevertheless, the presence of as many as six ethylene bridges in the superphane molecule makes it practically impossible for the trapped entity to escape out of the superphane cage. Thus, in this article, I have implemented the idea of using the superphane derivatives with a reduced number of ethylene linkers, which leads to the [2n] cyclophanes where n<6. Seven such cyclophanes are then allowed to form endohedral complexes with noble gas (Ng) atoms (He, Ne, Ar, Kr). It is shown that in the vast majority of cases, the initially trapped Ng atom spontaneously escapes from the cyclophane cage, creating an exohedral complex. This is the best proof that the Ng⋯cyclophane interaction in endohedral complexes is indeed highly repulsive, i.e., destabilizing. Apart from the ‘sealed’ superphane molecule, endohedral complexes are only formed in the case of the smallest He atom. However, it has been shown that in these cases, the Ng⋯cyclophane interaction inside the cyclophane cage is nonbonding, i.e., repulsive. This highly energetically unfavorable effect causes the cyclophane molecule to ‘swell’.     

Endohedral Hydrogen Bonding Templates the Formation of a Highly Strained Covalent Organic Cage Compound**

A highly strained covalent organic cage compound was synthesized from hexahydroxy tribenzotriquinacene (TBTQ) and a meta-terphenyl-based diboronic acid with an additional benzoic acid substituent in 2’-position. Usually, a 120° bite angle in the unsubstituted ditopic linker favors the formation of a [4+6] cage assembly. Here, the introduction of the benzoic acid group is shown to lead to a perfectly preorganized circular hydrogen-bonding array in the cavity of a trigonal-bipyramidal [2+3] cage, which energetically overcompensates the additional strain energy caused by the larger mismatch in bite angles for the smaller assembly. The strained cage compound was analyzed by mass spectrometry and ¹H, ¹³C and DOSY NMR spectroscopy. DFT calculations revealed the energetic contribution of the hydrogen-bonding template to the cage stability. Furthermore, molecular dynamics simulations on early intermediates indicate an additional kinetic effect, as hydrogen bonding also preorganizes and rigidifies small oligomers to facilitate the exclusive formation of smaller and more strained macrocycles and cages.     

Preconcentration and Determination of a Phospholipid at a Surface Modified by Layer‐by‐Layer Assembly

Electrochemical oxidation of a phospholipid, phosphatidylcholine (PC), was accomplished at a 4‐aminothiophenol (ATP)‐modified gold electrode coated with a layer‐by‐layer assembly of an electrochemical catalyst (dirhodium phosphomolybdic acid), a trapping agent for PC (a cyclophane, CP, derivative, 1,4‐xylylene‐1,4‐phenylene‐diacetate), and a spacer (generation‐4 polyamidoamine dendrimer, PAMAM). The layer‐by‐layer assembly process and the trapping of PC was verified by quartz crystal microbalance measurements; Au|ATP|CP|PAMAM|CP trapped (1.5±0.4)×10^?9 mol cm^?2 of PC. The electrocatalytic oxidation of PC yielded a current that varied linearly with concentration over the range 1–50 μM; the R² value was 0.996.     

Guest‐Induced Transformation of a Porphyrin‐Edged FeII4L6 Capsule into a CuIFeII2L4 Fullerene Receptor

The combination of a bent diamino(nickel(II) porphyrin) with 2‐formylpyridine and Fe^II yielded an Fe^II₄L₆ cage. Upon treatment with the fullerenes C₆₀ or C₇₀, this cage was found to transform into a new host–guest complex incorporating three Fe^II centers and four porphyrin ligands, in an arrangement that is hypothesized to maximize π interactions between the porphyrin units of the host and the fullerene guest bound within its central cavity. The new complex shows coordinative unsaturation at one of the Fe^II centers as the result of the incommensurate metal‐to‐ligand ratio, which enabled the preparation of a heterometallic cone‐shaped Cu^IFe^II₂L₄ adduct of C₆₀ or C₇₀.     

A Molecular Chameleon: Chromophoric Sensing by a Self-Complexing Molecular Assembly

A color change from purple to green takes place on addition of tetrathiafulvalene (TTF) to the macrobicyclic receptor 1 ⁴⁺, which is composed of a cyclobis(paraquat-p-phenylene) tetracation that shares one of its paraphenylene rings with a 1,5-naphthoparaphenylene-[36]crown-10 macrocycle. The TTF molecule forces the macrobicycle to turn inside out (see schematic drawing below) and displaces the self-complexed 1,5-dioxynaphthalene ring system from the center of the tetracationic cyclophane.     

Catalytic Cyclophanes. Part VIII. Cytochrome P-450 activity of a porphyrin-bridged cyclophane

Following a known synthetic procedure, the porphyrin-cyclophane 1 having a porphyrin attached by two straps to an apolar cyclophane binding site was prepared. Upon metallation, the Zn^II and Fe^III derivatives 2 and 3 , respectively, were obtained in good yields. Treatment of 3 with base yielded the μ-oxo dimer 4 in which the two oxo-bridged porphyrins moieties are both capped by cyclophane binding sites. All compounds 1–4 are freely soluble in protic solvents such as MeOH and CF₃CH₂OH, and the Fe^III derivatives 3 and 4 are active cytochrome P-450 mimics in these protic environments. Strong inclusion complexation of polycyclic aromatic hydrocarbons by 1 and 3 in alcoholic solvents was observed and quantified by ¹H-NMR and UV/VIS titrations. Acenaphthylene binds in an ‘equatorial’ orientation which locates its reactive 1,2-double bond near the porphyrin center, whereas phenanthrene binds ‘axially’ with the reactive 9,10-double bond oriented away from the porphyrin. The reduction potential of 3 was not significantly altered by substrate binding. In the unbound form, the Fe^III center in porphyrin 3 was found by ESR and ¹H-NMR to prefer a high-spin state (S = 5.2). In CF₃CH₂OH, using iodosylbenzene as O-transfer agent, the Fe^III derivative 3 catalyzed the oxidation of acenaphthylene to acenaphthen-1-one ( 14 ). Phenanthrene inhibited the reaction, possibly as a result of strong but nonproductive binding. Under similar conditions, isotetralin ( 18 ) was aromatized with high turnover to 1,4-dihydronaphthalene. The μ-oxo dimer 4 also showed high activity in the oxidation of acenaphthylen in MeOH, a result which provides strong evidence for efficent supramolecular catalysis. Due to as yet unknown reaction channels leading to polymeric products, poor mass balances were generally obtained in the oxidations effected in MeOH and CF₃CH₂OH in the presence of PhIO.     

Stepwise Halide‐Triggered Double and Triple Catenation of Self‐Assembled Coordination Cages

A simple self‐assembled [Pd₂ L ₄] coordination cage consisting of four carbazole‐based ligands was found to dimerize into the interpenetrated double cage [3 X@Pd₄ L ₈] upon the addition of 1.5 equivalents of halide anions (X=Cl^?, Br^?). The halide anions serve as templates, as they are sandwiched by four Pd^II cations and occupy the three pockets of the entangled cage structure. The subsequent addition of larger amounts of the same halide triggers another structural conversion, now yielding a triply catenated link structure in which each Pd^II node is trans‐coordinated by two pyridine donors and two halide ligands. This simple system demonstrates how molecular complexity can increase upon a gradual change of the relative concentrations of reaction partners that are able to serve different structural roles.     

Tight and Selective Caging of Chloride Ions by a Pseudopeptidic Host

The selective molecular recognition of chloride versus similar anions is a continuous challenge in supramolecular chemistry. We have designed and prepared a simple pseudopeptidic cage ( 1 a ) that defines a cavity suitable for the tight encapsulation of chloride. The interaction of the protonated form of 1 a with different inorganic anions was studied in solution by ¹H NMR spectroscopy and ESI‐MS, and in the solid state by X‐ray diffraction. The solution binding data showed that the association constants of 1 a to chloride are more than two orders of magnitude higher than to any other tested inorganic anion. Remarkably, 1 a displayed a high selectivity for chloride over other closely related halides such as bromide (selectivity=111), iodide (selectivity=719), and fluoride (selectivity >1000). Binding experiments (¹H NMR spectroscopy and ESI‐MS) suggested that 1 a has a high‐affinity (inner) binding site and an additional low‐affinity (external) binding site. The supramolecular complexes with F^?, Cl^?, and Br^? have been also characterized by the X‐ray diffraction of the corresponding [ 1 a? nHX] crystalline salts. The structural data show that the chloride anion is tightly encapsulated within the host, in a binding site defined by a very symmetric array of electrostatic H‐bonds. For the fluoride salt, the size of the cage cavity is too large and is occupied by a water molecule, which fits inside the cage efficiently competing with F^?. In the case of the bigger bromide, the mismatch of the anion inside the cage caused a geometrical distortion of the host and thus a large energetic penalty for the interaction. This minimalistic pseudopeptidic host represents a unique example of the construction of a simple well‐defined binding pocket that allows the highly selective molecular recognition of a challenging substrate.     

Catalytic Dendrophanes as Enzyme Mimics: Synthesis,Binding Properties,Micropolarity Effect,and Catalytic Activity of Dendritic Thiazolio-cyclophanes

Catalytic dendrophanes 9 and 10 were prepared as functional mimics of the thiamine-diphosphate-dependent enzyme pyruvate oxidase, and studied as catalysts in the oxidation of naphthalene-2-carbaldehyde ( 4 ) to methyl naphthalene-2-carboxylate ( 8 ) (Scheme 1). They are composed of a thiazolio-cyclophane initiator core with four generation 2 (G-2) poly(etheramide) dendrons attached. The two dendrophanes were synthesized by a convergent growth strategy by coupling dendrons 11 and 12 , respectively (Scheme 2) with (chloromethyl)-cyclophane 42 (Scheme 5) and subsequent conversion with 4-methylthiazole (Scheme 7). The X-ray crystal structures of cyclophane precursors 30 (Scheme 3), 37 , and 38 (Scheme 5) on the way to dendrophanes were determined (Fig. 1). The crystal-structure analysis of the benzene clathrate of 37 revealed the formation of channel-like stacks by the cyclophane which incorporate its morpholinomethyl side chain and the enclathrated benzene molecule (Fig. 2). The interactions of the enclathrated benzene molecule with the phenyl rings of the two adjacent cyclophane molecules in the stack closely resemble those between neighboring benzene molecules in crystalline benzene (Fig. 3). The characterization by MALDI-TOF-MS (Fig. 4), and ¹H- and ¹³C-NMR spectroscopy (Fig. 5) proved the monodispersity of the G-2 dendrophanes 9 and 10 with molecular weights up to 11500 Da (for 10 ). ¹H-NMR and fluorescence binding titrations in H₂O and aqueous MeOH showed that 9 and 10 form stable 1 : 1 complexes with naphthalene-2-carbaldehyde ( 4 ) and 6-(p-toluidino)naphthalene-2-sulfonate ( 48 , TNS) (Tables 1 and 2). The evaluation of the fluorescence emission maxima of bound TNS revealed that the dendritic branching creates a microenvironment of distinctly reduced polarity at the cyclophane core by limiting its exposure to bulk solvent. Initial rate studies for the oxidation of naphthalene-2-carbaldehyde to methyl naphthalene-2-carboxylate in basic aqueous MeOH in the presence of flavin derivative 6 revealed only a weak catalytic activity of dendrophanes 9 and 10 (Table 3), despite the favorable micropolarity at the cyclophane active site. The low catalytic activity in the interior of the macromolecules was explained by steric hindrance of reaction transition states by the dendritic branches.     

Photochemical Bromination of 2,5-Dimethylbenzoic Acid as Key Step of an Improved Alkyne-Functionalized Blue Box Synthesis**

Cyclobis(paraquat-p-phenylene), also known as “blue box”, is a highly electron-deficient macrocycle, widely used as a molecular receptor for small electron-rich molecules. Inserting a reactive functional group onto the molecular structure of this cyclophane is paramount for its inclusion into complex architectures. To this aim, including an alkyne moiety would be ideal, because it can participate in click reactions. However, the synthesis of such alkyne-functionalized cyclophane suffers from several drawbacks: the use of toxic and expensive CCl₄, the need for high-pressure reactors, and overall low yield. We have revised the existing synthesis of this cyclophane derivative bearing an alkyne moiety, to overcome all these limitations. In particular, photochemical radical bromination is adopted to obtain a sensitive intermediate. We demonstrated that the synthesized host molecule can be functionalized via click reactions and take part in radical-radical interactions. Our work makes a key functionalized paraquat macrocycle more accessible, facilitating the development of novel redox-responsive systems.     

Size-Selective Hydroformylation by a Rhodium Catalyst Confined in a Supramolecular Cage

Size-selective hydroformylation of terminal alkenes was attained upon embedding a rhodium bisphosphine complex in a supramolecular metal–organic cage that was formed by subcomponent self-assembly. The catalyst was bound in the cage by a ligand-template approach, in which pyridyl–zinc(II) porphyrin interactions led to high association constants (>10⁵ m ⁻¹) for the binding of the ligands and the corresponding rhodium complex. DFT calculations confirm that the second coordination sphere forces the encapsulated active species to adopt the ee coordination geometry (i.e., both phosphine ligands in equatorial positions), in line with in situ high-pressure IR studies of the host–guest complex. The window aperture of the cage decreases slightly upon binding the catalyst. As a result, the diffusion of larger substrates into the cage is slower compared to that of smaller substrates. Consequently, the encapsulated rhodium catalyst displays substrate selectivity, converting smaller substrates faster to the corresponding aldehydes. This selectivity bears a resemblance to an effect observed in nature, where enzymes are able to discriminate between substrates based on shape and size by embedding the active site deep inside the hydrophobic pocket of a bulky protein structure.