Synthesis of Methylene-Bridged Resorcin[4]arene Dimers

Methylene-bridged resorcin[4]arene dimers were synthesized by the Sc(OTf)₃-catalyzed hydroxymethylation of partially acetylated resorcin[4]arenes, and their preliminary complexation properties with tetraethylammonium ion were examined in CD₃OD by ¹H NMR spectroscopy. The dimers adopted a closed capsular conformation in this solvent and bound the guest molecule into their cavity.     

Scandium triflate-catalyzed cyclocondensation of 1,3-dialkoxybenzenes with 1,3,5-trioxane. Formation of resorcin[4]arenes and confused resorcin[4]arenes

The cyclocondensation of 1,3-dialkoxybenzenes with 1,3,5-trioxane was catalyzed by Sc(OTf)₃ to produce resorcin[4]arene octaalkyl ethers as the major products. In addition, ‘confused’ resorcin[4]arene octaalkyl ethers bearing one alkoxy group at the intra-annular position were obtained as the minor products. The variable temperature ¹H NMR spectroscopy showed that the alkoxy group at the intra-annular position cannot pass through the macrocyclic annulus, indicating a rigid molecular framework. The structure of the ethoxy derivative of the confused resorcin[4]arene was determined by X-ray crystallography.     

Thioether‐Functionalized Quinone‐Based Resorcin[4]arene Cavitands: Electroswitchable Molecular Actuators

The utility of molecular actuators in nanoelectronics requires activation of mechanical motion by electric charge at the interface with conductive surfaces. We functionalized redox‐active resorcin[4]arene‐quinone cavitands with thioethers as surface‐anchoring groups at the lower rim and investigated their propensity to act as electroswitchable actuators that can adopt two different conformations in response to changes in applied potential. Molecular design was assessed by DFT calculations and X‐ray analysis. Electronic properties were experimentally studied in solution and thin films electrochemically, as well as by X‐ray photoelectron spectroscopy on gold substrates. The redox interconversion between the oxidized (quinone, Q ) and the reduced (semiquinone, SQ ) state was monitored by UV‐Vis‐NIR spectroelectrochemistry and EPR spectroscopy. Reduction to the SQ state induces a conformational change, providing the basis for potential voltage‐controlled molecular actuating devices.     

Stimuli-Responsive Resorcin[4]arene Cavitands: Toward Visible-Light-Activated Molecular Grippers

Resorcin[4]arene cavitands, equipped with diverse quinone ( Q ) and [Ru(bpy)₂dppz]²⁺ (bpy=2,2′-bipyridine, dppz=dipyrido[3,2-a:2′,3′-c]phenazine) photosensitizing walls in different configurations, were synthesized. Upon visible-light irradiation at 420 nm, electron transfer from the [Ru(bpy)₂dppz]²⁺ to the Q generates the semiquinone ( SQ ) radical anion, triggering a large conformational switching from a flat kite to a vase with a cavity for the encapsulation of small guests, such as cyclohexane and heteroalicyclic derivatives, in CD₃CN. Depending on the molecular design, the SQ radical anion can live for several minutes (≈10 min) and the vase can be generated in a secondary process without need for addition of a sacrificial electron donor to accumulate the SQ state. Switching can also be triggered by other stimuli, such as changes in solvent, host–guest complexation, and chemical and electrochemical processes. This comprehensive investigation benefits the development of stimuli-responsive nanodevices, such as light-activated molecular grippers.     

Spatially Directional Resorcin[4]arene Cavitand Glycoconjugates for Organic Catalysis

The synthesis of novel spatially directional multivalent resorcin[4]arene cavitand glycoconjugates (RCGs) and their ability to catalyze organic reactions is reported. The β‐d ‐glucopyranoside moieties on the upper rim of the “bowl”‐shaped resorcin[4]arene cavitand core are capable of multiple hydrogen‐bond interactions resulting in a pseudo‐cavity, which has been investigated for organic transformations in aqueous media. The RCGs have been demonstrated to catalyze thiazole formation, thiocyanation, copper(I)‐catalyzed azide alkyne cycloaddition (CuAAC), and Mannich reactions; they impart stereoselectivity in the three‐component Mannich reaction. Thermodynamic values obtained from ¹H diffusion‐ordered spectroscopy (DOSY) experiments suggest that the upper saccharide cavity of the RCG and not the resorcin[4]arene cavity is the site of the complexation event.     

Process Development for Separation of Conformers from Derivatives of Resorcin[4]arenes and Pyrogallol[4]arenes

Macrocyclic compounds, such as resorcin[4]arenes and pyrogallol[4]arenes, have proven to be useful building blocks in the construction of supramolecular organic frameworks (SOFs) because of their unique bowl‐like shape and ability to interact through variety of intermolecular interactions. Herein, we report the synthesis and crystal structures of two functionalized resorcin[4]arenes and pyroagllol[4]arenes, 4‐hydroxyphenylresorcin[4]arenes, and 4‐hydroxyphenylpyrogallol[4]arenes. These phenyl‐functionalized macrocycles usually have different conformers, such as cone, boat, chair, saddle, and diamond. The successful separation of predominant conformers from the crude product was carried out with solvent‐extraction technique. The shape and molecular arrangement of these conformers in the individual crystal structure was verified with single‐crystal X‐ray diffraction studies.     

Functionally Rigid and Degenerate Molecular Shuttles

The preparation and dynamic behavior of two functionally rigid and degenerate [2]rotaxanes ( 1⋅ 4 PF₆ and 2⋅ 4 PF₆) in which a π-electron deficient tetracationic cyclophane, cyclobis(paraquat-p-phenylene) (CBPQT⁴⁺) ring, shuttles back and forth between two π-electron-rich naphthalene (NP) stations by making the passage along an ethynyl-phenylene-(PH)-ethynyl or butadiyne rod, are described. The [2]rotaxanes were synthesized by using the clipping approach to template-directed synthesis, and were characterized by NMR spectroscopic and mass spectrometric analyses. ¹H NMR spectra of both [2]rotaxanes show evidence for the formation of mechanically interlocked structures, resulting in the upfield shifts of the resonances for key protons on the dumbbell-shaped components. In particular, the signals for the peri protons on the NP units in the dumbbell-shaped components experienced significant upfield shifts at low temperatures, just as has been observed in the flexible [2]rotaxanes. Interestingly, the resonances for the same protons did not exhibit a significant upfield shift at 298 K, but rather only a modest shift. This phenomenon arises from the much reduced binding of the ethynyl-NP unit compared to the 1,5-dioxy-NP unit. This effect, in turn, increases the shuttling rate when compared to the 1,5-dioxy-NP-based rotaxane systems investigated previously. The kinetic and thermodynamic data of the shuttling behavior of the CBPQT⁴⁺ ring between the NP units were obtained by variable-temperature NMR spectroscopy and using the coalescence method to calculate the free energies of activation (ΔG_c^≠) of 9.6 and 10.3 kcal mol⁻¹ for 1⋅ 4 PF₆ and 2⋅ 4 PF₆, respectively, probed by using the rotaxane's α-bipyridinium protons. The solid-state structure of the free dumbbell-shaped compound ( 3 ) shows the fully rigid ethynyl-PH-ethynyl linker with a length (8.1 Å) twice as long as that (3.8 Å) of the butadiyne linker. Full-atomistic simulations were carried out with the DREIDING force field (FF) to probe the degenerate molecular shuttling processes, and afforded shuttling energy barriers (ΔG^≠=10.4 kcal mol⁻¹ for 1⋅ 4 PF₆ and 2⋅ 4 PF₆) that are in good agreement with the experimental values (ΔG_c^≠=9.6 and 10.3 kcal mol⁻¹ for 1⋅ 4 PF₆ and 2⋅ 4 PF₆, respectively, probed by using their α-bipyridinium protons).     

A Molecular Thermochromic Ferroelectric

Molecular ferroelectrics have attracted considerable interests because of their easy and environmentally friendly processing, low acoustical impedance and mechanical flexibility. Herein, a molecular thermochromic ferroelectric, N,N′‐dimethyl‐1,4‐diazoniabicyclo[2.2.2]octonium tetrachlorocuprate(II) ([DMe‐DABCO]CuCl₄) is reported, which shows both excellent ferroelectricity and intriguing thermochromism. [DMe‐DABCO]CuCl₄ undergoes a ferroelectric phase transition from Pca2₁ to Pbcm at a significantly high Curie temperature of 413 K, accompanied by a color change from yellow to red that is due to the remarkable deformation of [CuCl₄]^2? tetrahedron, where the ferroelectric and paraelectric phases correspond to yellow and red, respectively. Combined with multiple bistable physical properties, [DMe‐DABCO]CuCl₄ would be a promising candidate for next‐generation smart devices, and should inspire further exploration of multifunctional molecular ferroelectrics.     

Quantum and Classical Molecular Dynamics of Ionic Liquid Electrolytes for Na/Li‐based Batteries: Molecular Origins of the Conductivity Behavior

Compositional effects on the charge‐transport properties of electrolytes for batteries based on room‐temperature ionic liquids (RTILs) are well‐known. However, further understanding is required about the molecular origins of these effects, in particular regarding the replacement of Li by Na. In this work, we investigate the use of RTILs in batteries, by means of both classical molecular dynamics (MD), which provides information about structure and molecular transport, and ab initio molecular dynamics (AIMD), which provides information about structure. The focus has been placed on the effect of adding either Na⁺ or Li⁺ to 1‐methyl‐1‐butyl‐pyrrolidinium [C₄PYR]⁺ bis(trifluoromethanesulfonyl)imide [Tf₂N]^?. Radial distribution functions show excellent agreement between MD and AIMD, which ensures the validity of the force fields used in the MD. This is corroborated by the MD results for the density, the diffusion coefficients, and the total conductivity of the electrolytes, which reproduce remarkably well the experimental observations for all studied Na/Li concentrations. By extracting partial conductivities, it is demonstrated that the main contribution to the conductivity is that of [C₄PYR]⁺ and [Tf₂N]^?. However, addition of Na⁺/Li⁺, although not significant on its own, produces a dramatic decrease in the partial conductivities of the RTIL ions. The origin of this indirect effect can be traced to the modification of the microscopic structure of the liquid as observed from the radial distribution functions, owing to the formation of [Na(Tf₂N)_n]^(n?1)? and [Li(Tf₂N)_n]^(n?1)? clusters at high concentrations. This formation hinders the motion of the large ions, hence reducing the total conductivity. We demonstrate that this clustering effect is common to both Li and Na, showing that both ions behave in a similar manner at a microscopic level in spite of their distinct ionic radii. This is an interesting finding for extending Li‐ion and Li‐air technologies to their potentially cheaper Na‐based counterparts.     

Water‐Soluble Molecular Capsules: Self‐Assembly and Binding Properties

The self‐assembly and characterization of water‐soluble calix[4]arene‐based molecular capsules ( 1?2 ) is reported. The assemblies are the result of ionic interactions between negatively charged calix[4]arenes 1 a and 1 b , functionalized at the upper rim with amino acid moieties, and a positively charged tetraamidiniumcalix[4]arene 2 . The formation of the molecular capsules is studied by ¹H NMR spectroscopy, ESI mass spectrometry (ESI‐MS), and isothermal titration calorimetry (ITC). A molecular docking protocol was used to identify potential guest molecules for the self‐assembled capsule 1 a?2 . Experimental guest encapsulation studies indicate that capsule 1 a?2 is an effective host for both charged (N‐methylquinuclidinium cation) and neutral molecules (6‐amino‐2‐methylquinoline) in water.     

Programming A Molecular Relay for Ultrasensitive Biodetection through 129Xe NMR

A supramolecular strategy for detecting specific proteins in complex media by using hyperpolarized ¹²⁹Xe NMR is reported. A cucurbit[6]uril (CB[6])‐based molecular relay was programmed for three sequential equilibrium conditions by designing a two‐faced guest (TFG) that initially binds CB[6] and blocks the CB[6]–Xe interaction. The protein analyte recruits the TFG and frees CB[6] for Xe binding. TFGs containing CB[6]‐ and carbonic anhydrase II (CAII)‐binding domains were synthesized in one or two steps. X‐ray crystallography confirmed TFG binding to Zn²⁺ in the deep CAII active‐site cleft, which precludes simultaneous CB[6] binding. The molecular relay was reprogrammed to detect avidin by using a different TFG. Finally, Xe binding by CB[6] was detected in buffer and in E. coli cultures expressing CAII through ultrasensitive ¹²⁹Xe NMR spectroscopy.     

Vase‐Kite Equilibrium of Resorcin[4]arene Cavitands Investigated Using Molecular Dynamics Simulations with Ball‐and‐Stick Local Elevation Umbrella Sampling

A key feature of resorcin[4]arene cavitands is their ability to switch between a closed/contracted (Vase ) and an open/expanded (Kite ) conformation. The mechanism and dynamics of this interconversion remains, however, elusive. In the present study, the Vase ‐Kite transitions of a quinoxaline‐based and of a dinitrobenzene‐based resorcin[4]arene are investigated using molecular dynamics (MD) simulations in three environments (vacuum, chloroform, and toluene) and at three temperatures (198.15, 248.15, and 298.15 K). The challenge of sampling the Vase ‐Kite transition, which occurs experimentally on the millisecond time scale, is overcome by calculating relative free energies using ball‐and stick local elevation umbrella sampling (B&S‐LEUS) to enhance the statistics on the relevant states and to promote interconversion transitions. Associated unbiased MD simulations also evidence for the first time a complete Vase ‐to‐Kite transition, as well as transitions between degenerate Kite 1 and Kite 2 forms and solvent‐exchange events. The calculated Vase ‐to‐Kite free‐energy changes ΔG are in qualitative agreement with the experimental magnitudes and trends. The level of quantitative agreement is, however, limited by the force‐field accuracy and, in particular, by the approximate treatment of intramolecular interactions at the classical level. The results are in line with a less stable Vase state for the dinitrobenzene compared to the quinoxaline compound, and a negative entropy change ΔS for the Vase ‐to‐Kite transition of the latter compound. Relative free energies calculated for intermediates also suggest that the Vase ‐Kite transition does not follow a concerted mechanism, but an asynchronous one with sequential opening of the flaps. In particular, the conformation involving two adjacent flaps open in a parallel direction (cis‐p) represents a likely intermediate, which has not been observed experimentally to date.     

Conformational Switching of Resorcin[4]arene Cavitands by Protonation,Preliminary Communication

The synthesis of the quinoxaline‐bridged resorcin[4]arene cavitand 1 was accomplished from 2‐[3,5‐di(tert‐butyl)phenyl]acetaldehyde via formation of the intermediate octol 2 . Such cavitands are known to occur in an open `kite' conformation at low temperature (<213 K) but to adopt a `vase' conformation at elevated temperatures (>318 K). We discovered that protonation of cavitand 1 at room temperature by common acids, such as CF₃COOH, also causes reversible switching from `vase' to `kite', and that this conformational change can be conveniently monitored by both ¹H‐NMR and UV/VIS spectroscopy.     

Surface‐Bound Cucurbit[8]uril Catenanes on Magnetic Nanoparticles Exhibiting Molecular Recognition

We demonstrate the preparation of surface‐bound cucurbit[8]uril (CB[8]) catenanes on silica nanoparticles (NPs), where CB[8] was employed as a tethered supramolecular “handcuff” to selectively capture target guest molecules. In this catenane, CB[8] was threaded onto a methyl viologen (MV²⁺) axle and immobilized onto silica NPs. The formation of CB[8] catenanes on NPs were confirmed by UV/Vis titration experiments and lithographic characterization, demonstrating a high density of CB[8] on the silica NPs surface, 0.56 nm^?2. This CB[8] catenane system exhibits specific molecular recognition towards certain aromatic molecules such as perylene bis(diimide), naphthol and aromatic amino acids, and thus it can act as a nanoscale molecular receptor for target guests. Furthermore, we also demonstrate its use as an efficient and recyclable nano‐platform for peptide separation. By embedding magnetic NPs inside silica NPs, separation could be achieved by simply applying an external magnetic field. Moreover, the peptides captured by the catenanes could be released by reversible single‐electron reduction of MV²⁺. The entire process demonstrated high recoverability.     

A pH‐Sensitive Lasso‐Based Rotaxane Molecular Switch

The synthesis of a pH‐sensitive two‐station [1]rotaxane molecular switch by self‐entanglement of a non‐interlocked hermaphrodite molecule, containing an anilinium and triazole moieties, is reported. The anilinium was chosen as the best template for the macrocycle benzometaphenylene[25]crown‐8 (BMP25C8) and allowed the self‐entanglement of the molecule. The equilibrium between the hermaphrodite molecule and the pseudo[1]rotaxane was studied by ¹H NMR spectroscopy: the best conditions of self‐entanglement were found in the less polar solvent CD₂Cl₂ and at high dilution. The triazole moiety was then benzylated to afford a benzyltriazolium moiety, which then played a dual role. On one hand, it acts as a bulky gate to trap the BMP25C8, thus to avoid any self‐disentanglement of the molecular architecture. On another hand, it acts as a second molecular station for the macrocycle. At acidic pH, the BMP25C8 resides around the best anilinium molecular station, displaying the lasso [1]rotaxane in a loosened conformation. The deprotonation of the anilinium molecular station triggers the shuttling of the BMP25C8 around the triazolium moiety, therefore tightening the lasso.     

Acid‐Base Switchable [2]‐ and [3]Rotaxane Molecular Shuttles with Benzimidazolium and Bis(pyridinium) Recognition Sites

For the purpose of developing higher level mechanically interlocked molecules (MIMs), such as molecular switches and machines, a new rotaxane system was designed in which both the 1,2‐bis(pyridinium)ethane and benzimidazolium recognition templating motifs were combined. These two very different recognition sites were successfully incorporated into [2]rotaxane and [3]rotaxane molecular shuttles which were fully characterized by ¹H NMR, 2D EXSY, single‐crystal X‐ray diffraction and VT NMR analysis. By utilizing benzimidazolium as both a recognition site and stoppering group it was possible to create not only an acid/base switchable [2]rotaxane molecular shuttle (energy barrier 20.9 kcal?mol^?1) but also a [3]rotaxane molecular shuttle that displays unique dynamic behavior involving the simultaneous motion of two macrocyclic wheels on a single dumbbell. This study provides new insights into the design of switchable molecular shuttles. Due to the unique properties of benzimidazoles, such as fluorescence and metal coordination, this new type of molecular shuttle may find further applications in developing functional molecular machines and materials.     

Light-actuated resorcin[4]arene cavitands

A light-actuated resorcin[4]arene cavitand equipped with two quinone (Q) and two opposite Ru(II)-based photosensitizing walls was synthesized and investigated. The cavitand is capable of switching from an open to a contracted conformation upon reduction of the two Q to the corresponding SQ radical anions by intramolecular photoinduced electron transfer in the presence of a sacrificial donor. The molecular switch was investigated by cyclic and rotating disc voltammetry, UV–Vis–NIR spectroelectrochemistry, transient absorption, NMR, and EPR spectroscopy. This study provides the basis for the development of future light-activated switches and molecular actuating nanodevices.     

Binding properties and self-assembly of C2v-symmetrical resorcin[4]arene tetrabenzoates

In the crystalline state two molecules of resorcin[4]arene tetrabenzoates and four chloride anions form molecular wraps containing two Et₃NH⁺ cations. The structure and composition of the wraps depend on the length of the alkyl chains at the narrow rim of the macrocycle. Resorcin[4]arene tetrabenzoates interact with ammonium salts in CDCl₃.     

Dynamic Equilibrium between a Supramolecular Capsule and Bowl Generated by Inter‐ and Intramolecular Metal Clipping

The metal‐induced self‐assembly of a resorcin[4]arene derivative 1 that has four pyridine units as pendent groups and two equivalents of [M(dppp)(OTf)₂] (M=Pd, Pt) results in a dynamic equilibrium between an interclipped supramolecular capsule 3 and an intraclipped bowl 4 in nitromethane, although the interclipped capsule 3 is formed as a sole adduct in chloroform/methanol and the intraclipped bowl 4 is formed exclusively in an aqueous phase. This demonstrates how metal‐induced self‐assembly can be tuned by subtle changes in the solvent system. The coexistence of the two structures in nitromethane was characterized by NMR spectroscopy and coldspray ionization mass spectrometry (CSI‐MS). The crystal structure of the interclipped capsule 3 b , which is composed of two units of ligand 1 and four Pt^II ions, reveals the capsule cavity to have nanoscale dimensions of 15×20 Å. NMR spectra show that the dynamic equilibrium between 3 and 4 is dependent on concentration and temperature. Temperature‐dependent ¹H NMR spectroscopy was carried out from 273 to 343 K to verify the thermodynamic parameters that control the dynamic equilibrium process; the conversion from the interclipped supramolecular capsule 3 a to the intraclipped bowl 4 a is entropically favored and enthalpically disfavored. The rotational barrier of the restricted rotation of pyridine units in the intraclipped bowl 4 was determined by line‐shape analysis.     

Molecular dimensions of polydipropylsiloxamer

The molecular dimensions of polydipropylsiloxamer were studied by intrinsic viscosity measurements in toluene and in 2-pentanone. The relationships between the molecualr weight and the intrinsic viscosity were found to be: [η]_25°C., toluene = 4.35 × 10^?4 M^0.58; [η]_θ(10°C.), toluene = 1.09 × 10^?3 M^0.5; [η]_θ(76°C.), 2-pentanone = 8.71 × 10^?4 M^0.5. This held reasonably well for molecular weights from 25,000 to 3000,000. The root-mean-square end-to-end length ratio, (r₀² /M)^1/2 as calculated from the constant K, exceeds the free rotation value by approximately 100%. The disparity is greater than that found with polydimethylsiloxamer, indicating a lower degree of flexibility for the polydipropylsiloxamer. This is largely due to the short range steric interaction between near neighboring units of the chain. Gel permeation chromatography was also employed to demonstrate the lower degree of flexibility for polydipropylsiloxamer as compared with polydimethylsiloxamer.