Ionic recognition by thiacalixarenes: binding of alkali and heavy metal ions by thiacalix[4]arene-bis-crown[n] ethers

The binding properties of two thiacalix[4]arene-bis-crown[n] derivatives (n = 5 and 6) were examined through extraction experiments. The stability constants of the resulting complexes in methanol were determined. The replacement of the bridging CH2 groups by sulfur atoms leads to a strong decrease in both extraction and complexation levels of alkali metal ions but does not affect the selectivity within the series of crown ethers. The stability of complexes with heavy metal ions does not change markedly on passing from thiacalix[4]arene-bis-crown[n] ethers to their calix[4]arene-bis-crown[n] counterparts; therefore no clear-cut conclusions about the possible interactions between these cations and the sulfur atoms can be drawn.     

Structural and Spectroscopic Characterization of Bis(thiosaccharinato)‐trispyridine‐cadmium(II)

The crystal structure of the title complex, [Cd(tsac)₂(py)₃], has been determined by single crystal X‐ray diffractometry. It crystallizes in the monoclinic space group C2/c with Z = 8.The Cd ²⁺ cation is at the center of a square‐ bipyramidal environment, equatorially coordinated to two thiosaccharinate anions through their sulfur atoms and the nitrogen atom of one of them acting as a bidentate ligand. Nitrogen atoms of pyridine molecules occupy the fourth equatorial position and the two axial ones. The infrared and electronic spectra of the complex were briefly discussed. Its thermal stability was investigated by thermogravimetric and differential thermal analysis.     

Palladium(II) and platinum(II) complexes of 6-methyl-2-acetylpyridine 3-hexamethyleneiminylthiosemicarbazones: A structural and spectral study

The reaction of 6-methyl-2-acetylpyridine 3-hexamethyleneiminyl-thiosemicarbazone, H6MAchexim, with potassium tetrachloropalladate(II) and tetrachloroplantinate(II) in methanol afforded the complexes [Pd(6MAchexim)Cl] and [Pt(6MAchexim)Cl], respectively. The X-ray crystal structure determination of both shows that anions of H6MAchexim coordinate in a planar conformation to the central palladium(II) or platinum(II) via the pyridyl nitrogen, azomethine nitrogen and thiolato sulfur atoms. The complexes have also been characterized by spectroscopic techniques (IR, UV–VIS and ¹H NMR).     

9‐Cyano‐10‐methylacridinium hydrogen dinitrate

The title compound, C₁₅H₁₁N₂⁺·HN₂O₆^?, crystallizes in the monoclinic space group C2/c with four mol­ecules in the unit cell. The planar 9‐cyano‐10‐methyl­acridinium cations lie on crystallographic twofold axes and are arranged in layers, almost perpendicular to the ac plane, in such a way that neighbouring mol­ecules are positioned in a `head‐to‐tail' manner. These cations and the hydrogen dinitrate anions are linked through C—H?O interactions involving four of the six O atoms of the anion and the H atoms attached to the C atoms of the acridine moiety in ring positions 2 and 4. The H atom of the hydrogen dinitrate anion appears to be located on the centre of inversion relating two of the four O atoms engaged in the above‐mentioned C—H?O interactions. In this way, columns of either anions or cations running along the c axis are held in place by the network of C—H?O interactions, forming a relatively compact crystal lattice.     

Synthesis,Crystal Structure,Optical, Magnetic,and Thermal Properties of the New Heteroleptic Chromium Complex [Ph4P][Cr(en)(S5)2]

The new heteroleptic chromium complex [Ph₄P][Cr(en)(S₅)₂] has been synthesised under mild solvothermal conditions by the reaction of chromium trichloride, sulfur, and tetraphenylphosphoniumbromide in a solution of ethylendiamine ( en ) in water. The crystal structure consists of isolated tetraphenylphosphonium cations and [Cr(en)(S₅)₂]^– anions. The Cr³⁺ cations are in an octahedral coordination of two bidentate S₅^2– polysulfide anions and one bidentate en ligand. The N atoms of the en ligand and the terminal S atoms of the S₅^2– anions bonded to the Cr³⁺ ions are in a cis-position. The six-membered CrS₅ rings are in a chair conformation. The three dimensional arrangement of the cations and anions is achieved via intermolecular hydrogen bonds. Investigations with differential thermal analysis (DTA) combined with thermogravimetry (TG) show a stepwise decomposition. In the first step the en ligand is removed completely followed by the emission of a part of the tetraphenylphosphonium cations and the sulfur atoms in the second step. The temperature dependence of the magnetic susceptibility exhibits a Curie-Weiss behaviour with an effective magnetic moment typical for a Cr³⁺ (d³) ion and a value for the Weiss constant of 1.3(2) K. Fourier transform infrared spectroscopy (FTIR) was also performed to characterise the optical properties.     

A one‐dimensional CdII coordination polymer: catena‐poly[cadmium(II)‐bis(μ‐6‐methylpicolinato)]

In the title compound, [Cd(C₇H₆NO₂)₂]_n, the Cd^II ion has a distorted octahedral geometry. The 6‐methylpyridine‐2‐carboxylate anions are perpendicular to one another and act as bidentate and bridging ligands. Two carboxylate O atoms bridge the Cd^II ions, forming centrosymmetric dinuclear units. These units are further connected via carboxylate O atoms into a one‐dimensional polymeric chain which extends in the [100] direction.     

Syntheses,Structural, and Spectroscopic Properties of Copper(II) Complexes of Constrained Macrocyclic Ligands

The complexes [Cu(L¹)(H₂O)₂](BF₄)₂ · 2H₂O ( 1 ) [L¹ = 5, 16‐dimethyl‐2, 6, 13, 17‐tetraazatricyclo(14, 4, 0^1.18,0^7.12)docosane] and 0.5[Cu(L²)(NO₃)₂][Cu(L²)](NO₃)₂ ( 2 ) [L² = dibenzyl‐5, 16‐dimethyl‐2, 6, 13, 17‐tetraazatricyclo(14, 4, 0^1.18,0^7.12)docosane] were synthesized and characterized by single crystal X‐ray analyses. In these constrained macrocycles, the central copper(II) atoms are in a tetragonally distorted octahedral environment with four nitrogen atoms of the macrocyclic ligands in equatorial positions and oxygen atoms from either water molecules or nitrato groups in axial positions. The macrocyclic ligands in both complexes adopt the most stable trans‐III conformation. The Cu–N distances [1.999(7)–2.095(7) Å] are typical for such complexes, but the axial ligands are weakly coordinating Cu–OH₂ bonds [2.693(3) Å] and Cu–ONO₂ bonds [2.873(7) Å] due to the combination of the pseudo Jahn–Teller effect and strong in‐plane ligand field. The crystals are stabilized by a three‐dimensional network by hydrogen bonds that are formed among the secondary nitrogen hydrogen atoms, oxygen atoms of water molecules, fluorine atoms of BF₄^–, and oxygen atoms of NO₃^–. The electronic absorption and IR spectroscopic properties are also discussed.     

Synthesis of i-Corona[6]arenes for Selective Anion Binding: Interdependent and Synergistic Anion–π and Hydrogen-Bond Interactions

i-Corona[3]arene[3]tetrazines were synthesized from the nucleophilic aromatic substitution reaction of resorcinol and its derivatives with 3,6-dichlorotetrazine in a one-pot fashion under mild conditions. All of the resulting macrocycles adopted 1,3,5-alternate conformation irrespective of the nature of the substituents on both upper- and lower-rims. i-Corona[3]arene[3]tetrazine was found to self-regulate its macrocyclic conformation and cavity to recognize anions with binding constants spanning from 26 M⁻¹ to 2.2×10³ M⁻¹ depending on the structure of the anions. The selective binding resulted from a significant interdependent and synergistic effect between multiple tetrazine π/anion and C_aryl–H/anion hydrogen bond interactions. Taking advantage of synergistic effect revealed, a cyanobenzene-embedded i-corona[3]arene[3]tetrazine was designedly synthesized and highly selective and very strong affinity toward nitrate with a binding constant of 2.2×10⁵ M⁻¹ was achieved.     

Low-dimensional Compounds Containing Cyano Groups. XIII. Structural–spectral Correlation of Copper Dicyanoargentates

The new mixed-valence mixed-metal complex Cu(py)₆Cu₂Ag₂(CN)₆ (py = pyridine) possesses a three dimensional polymeric crystal structure. The Cu(I) atom is tetrahedrally coordinated by two nitrogen atoms of pyridine molecules, by one nitrogen atom of the dicyanoargentate anion and by one carbon atom of the cyano group. Both the dicyanoargentate anion and the cyano group bridge the Cu(I) atom with neighboring Cu(II) atoms. These are hexacoordinated in the form of an elongated tetragonal bipyramid. The equatorial plane is formed by two nitrogen atoms from two pyridine molecules and two nitrogen atoms from bridging cyano groups. Axial positions are occupied by nitrogen atoms of the bridging [Ag(CN₂]⁻ anions. Correlation between structures of the title compound and seven other dicyanoargentates with their i.r. spectra has been studied. The coordination mode of [Ag(CN₂]⁻ anions in compounds Cu_8-xAg_x(tn)₃(CN)₁₀ x = 0.25, Cu(3-Mepy)₂Ag₂(CN)₄, Cu(py)₂Ag₂(CN)₄ and Cu(py)₄Ag₂(CN)₄ (tn is 1,3-diaminopropane, 3-Mepy is 3-methylpyridine) is predicted based on this correlation.     

Synthesis,structural and conformational study of some esters derived from 8-phenethyl-8-azabicyclo[4.3.1]decan-10α-ol

A series of 10α-acyloxy-N-phenethyl-8-azabicyclo[4.3.1]decane derivatives have been synthesized and studied by ¹H and ¹³C nmr spectroscopy, and the crystal structure of N-phenethyl-10aL-(xanten-9″-carbonyloxy)bicyclo[4.3.1]decane 2 has been determined by X-ray diffraction. The compounds studied display in deuteriochloroform the same preferred conformation adopted by the piperidine ring as a distorted chair conformation flattened at N-8 with both the phenethyl and acyloxy groups in the equatorial position with respect to the piperidine ring. These results are in close agreement with that found for compound 2 in the crystalline state.     

Conformational analysis of 1,4,7-trithiacyclodecane and related compounds: Synthesis and complexation studies of mesocyclic and macrocyclic polythioethers VI

Molecular mechanics (MM2) calculations have been carried out on the ten-membered ring trithioethers, 1,4,7-trithiacyclodecane (10S3) and 1,4,7-trithiacyclodecan-9-one (keto-10S3). The lowest energy conformations according to these calculations are a [1333] and a [2233] conformation, respectively. The crystal and molecular structure of the ketone, 1,4,7-trithiacyclodecan-9-one, has been determined by a single-crystal X-ray study. The compound crystallizes in the monoclinic space group P2₁, with two molecules per unit cell of dimensions a = 7.176(1) Å, b = 5.3447(6) Å, c = 12.0914(6) Å, and β = 96.486(7)⁰, and R = 0.048. The conformation adopted by the compound in the crystalline state is a [2323] or boat-chair-boat conformation with two sulfur atoms endodentate and one sulfur atom exodentate.     

Hydrogen bonding in polyamino‐polyalcohols: a monohydrated cocrystal of 1,3‐diamino‐5‐azaniumyl‐1,3,5‐trideoxy‐cis‐inositol iodide and 1,3,5‐triamino‐1,3,5‐trideoxy‐cis‐inositol

In the title monohydrated cocrystal, namely 1,3‐diamino‐5‐azaniumyl‐1,3,5‐trideoxy‐cis‐inositol iodide–1,3,5‐triamino‐1,3,5‐trideoxy‐cis‐inositol–water (1/1/1), C₆H₁₆N₃O₃⁺·I⁻·C₆H₁₅N₃O₃·H₂O, the neutral 1,3,5‐triamino‐1,3,5‐trideoxy‐cis‐inositol (taci) molecule and the monoprotonated 1,3‐diamino‐5‐azaniumyl‐1,3,5‐trideoxy‐cis‐inositol cation (Htaci⁺) both adopt a chair conformation, with the three O atoms in axial and the three N atoms in equatorial positions. The cation, but not the neutral taci unit, exhibits intramolecular O—H...O hydrogen bonding. The entire structure is stabilized by a complex three‐dimensional network of intermolecular hydrogen bonds. The neutral taci entities and the Htaci⁺ cations are each aligned into chains along [001]. In these chains, two O—H...N interactions generate a ten‐membered ring as the predominant structural motif. The rings consist of vicinal 2‐amino‐1‐hydroxyethylene units of neighbouring molecules, which are paired via centres of inversion. The chains are interconnected into undulating layers parallel to the ac plane, and the layers are further held together by O—H...N hydrogen bonds and additional interactions with the iodide counter‐anions and solvent water molecules.     

Elucidating the Germanium Distribution in ITQ-13 Zeolites by Density Functional Theory**

ITQ-13 is a medium-pore zeolite that can be prepared in all-silica form and as silicogermanate with Si/Ge ratios as low as 3. Usually synthesised in the presence of fluoride, ITQ-13 is among the very few systems containing fluoride anions in two distinct cage types, cube-like d4r units and [4 ⋅ 5⁶] cages. Here, dispersion-corrected density functional theory (DFT) calculations are used to investigate the energetically most favourable Ge distributions for Si/Ge ratios between 55 and 6. The calculations show Ge atoms are incorporated at both the corners of d4r cages and at the basal plane of the [4 ⋅ 5⁶] cages, in accordance with ¹⁹F NMR spectroscopy. Two Ge atoms at adjacent corners of [4 ⋅ 5⁶] cages are stable at the highest Ge content considered (Si/Ge=6). Such a local environment has not yet been considered in the experimental literature. A calculation of the corresponding ¹⁹F NMR resonance points to overlap with other resonances, which might preclude its clear identification. Additional calculations investigate the variation of the dynamic behaviour of the fluoride anions as a function of the local environment as well as the selective defluorination of the [4 ⋅ 5⁶] cages.     

Nonspherical anion sequestration by C–H hydrogen bonding

Macrocyclic arenes laid the foundations of supramolecular chemistry and their study established the fundamentals of noncovalent interactions. Advancing their frontier, here we designed rigidified resorcin[4]arenes that serve as hosts for large nonspherical anions. In one synthetic step, we vary the host''s anion affinity properties by more than seven orders of magnitude. This is possible by engineering electropositive aromatic C–H bond donors in an idealized square planar geometry embedded within the host''s inner cavity. The hydrogen atom''s electropositivity is tuned by introducing fluorine atoms as electron withdrawing groups. These novel macrocycles, termed fluorocages, are engineered to sequester large anions. Indeed, experimental data shows an increase in the anion association constant (K_a) as the number of F atoms increase. The observed trend is rationalized by DFT calculations of Hirshfeld Charges (HCs). Most importantly, fluorocages in solution showed weak-to-medium binding affinity for large anions like [PF₆]⁻ (10²< K_a <10⁴ M⁻¹), and high affinity for [MeSO₃]⁻ (K_a >10⁶).

Fluorocages: new class of rigidified host utilizing nontraditional C–H hydrogen bonds to capture the nonspherical anions.     

Poly[(μ‐pentafluorobenzoato‐κ2O:O′)(pentafluorobenzoato‐κO)(μ‐pyrazine‐κ2N:N′)copper(II)]: a coordination polymer linked into a three‐dimensional network by intermolecular C—H...F—C interactions

In the title compound, [Cu(C₆F₅COO)₂(C₄H₄N₂)]_n, (I), the asymmetric unit contains one Cu^II cation, two anionic pentafluorobenzoate ligands and one pyrazine ligand. Each Cu^II centre is five‐coordinated by three O atoms from three independent pentafluorobenzoate anions, as well as by two N atoms from two pyrazine ligands, giving rise to an approximately square‐pyramidal coordination geometry. Adjacent Cu^II cations are bridged by a pyrazine ligand and two pentafluorobenzoate anions to give a two‐dimensional layer. The layers are stacked to generate a three‐dimensional supramolecular architecture via strong intermolecular C—H...F—C interactions, as indicated by the F...H distance of 2.38 Å.     

Hydrogen‐bonded frameworks of bis(2‐carboxypyridinium) hexafluorosilicate and bis(2‐carboxyquinolinium) hexafluorosilicate dihydrate

In bis(2‐carboxypyridinium) hexafluorosilicate, 2C₆H₆NO₂⁺·SiF₆²⁻, (I), and bis(2‐carboxyquinolinium) hexafluorosilicate dihydrate, 2C₁₀H₈NO₂⁺·SiF₆²⁻·2H₂O, (II), the Si atoms of the anions reside on crystallographic centres of inversion. Primary inter‐ion interactions in (I) occur via strong N—H...F and O—H...F hydrogen bonds, generating corrugated layers incorporating [SiF₆]²⁻ anions as four‐connected net nodes and organic cations as simple links in between. In (II), a set of strong N—H...F, O—H...O and O—H...F hydrogen bonds, involving water molecules, gives a three‐dimensional heterocoordinated rutile‐like framework that integrates [SiF₆]²⁻ anions as six‐connected and water molecules as three‐connected nodes. The carboxyl groups of the cation are hydrogen bonded to the water molecule [O...O = 2.5533 (13) Å], while the N—H group supports direct bonding to the anion [N...F = 2.7061 (12) Å].     

X-ray diffraction study of benzothiacrown compounds and their complexes with heavy metal cations

The structures of a series of substituted benzothiacrown compounds containing the dithia-15-crown-5, dithia-18-crown-6, or monothia-15-crown-5 fragment and their complexes with Ag⁺ and Pb2⁺ ions were studied by X-ray diffraction. In free benzothiacrown compounds, the sulfur atoms are preferably located outside the macrocyclic cavity, and their lone electron pairs (LEPs) point away from the center of the macrocycle, which is unfavorable for the formation of inclusion complexes. Flexible macrocyclic fragments can change their conformations in accord with the coordination requirements of heavy metal cations. As a result, benzothiacrown compounds involved in complexes adopt a crown conformation, in which LEPs of all hetero-atoms point toward the cation. The sulfur atoms are involved in coordination of Ag⁺ to a greater degree than the oxygen atoms due to high affinity of soft sulfur atoms for silver cations. On the contrary, the sulfur and oxygen atoms are involved to approximately the same degree in coordination of Pb2⁺ ions. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 967–976, May, 2007.     

Regio-/stereoselective formation of monosulfoxides from thiacalix[4]arenes in all possible conformations

The partial S-oxidation of all four basic conformations of thiacalix[4]arene was carried out using NaBO₃·4H₂O as the oxidizing agent. It was found that despite the possible formation of many regio- and stereoisomers, the reactions leading to mono- or disulfoxides were highly regio- and stereoselective depending on the starting conformation. Our results clearly show that the sulfur atoms possessing syn-orientation of the appended phenolic units are remarkably more reactive than the sulfur atoms with anti-oriented aromatic subunits. Moreover, the most easily formed syn-oriented equatorial configuration is highly preferred over the corresponding axial arrangement which was never observed. As demonstrated by the resolution of racemic products, partial S-oxidation represents a very interesting tool to access novel inherently chiral building blocks based on thiacalix[4]arenes.     

Hexanuclear Niobium Cluster Compounds with Protonated N-Base Cations

Octahedral clusters of the [M₆X₁₂] type offer numerous possibilities to form structural arrangements through different choices of bonding situations. In this paper a series of new cluster compounds of the transition metal niobium is described, which consist of the [Nb₆Cl₁₈]^2–, and in one case [Nb₆Cl₁₈]^3–, anion and protonated N-base cations ([MIm-H]⁺, [nPr₃N-H]⁺, [TMGu-H]⁺, and [Tzn-H]⁺). They all are prepared using water scavenger compounds [SOCl₂ or (Ac)₂O] under oxidising conditions, resulting in two-electron (or one-electron, respectively) oxidized cluster units with respect to the starting material [Nb₆Cl₁₄(H₂O)₄] · 4H₂O. Of five members of this group single-crystal X-ray structures were determined. The cluster anions exist in all structures as discrete units. The acidic H atoms of all N-bases are hydrogen bonded to H acceptors, in 4 cases to outer, exo bonded Cl atoms of the cluster unit and in one case to the O atom of a co-crystallized THF molecule. In [TMGu-H]₂[Nb₆Cl₁₈] chains of cluster anions exist hydrogen-bonded through bridging [TMGu-H]⁺ cations. ESI mass spectra of [MIm-H]₂[Nb₆Cl₁₈] · 2SOCl₂ and [TMGu-H]₂[Nb₆Cl₁₈] show the expected isotopic distribution patterns for the anions together with other peaks associated to chloride mass losses and/or reduction processes.     

catena‐Poly[[bis[5‐(4‐pyridyl‐κN)‐2‐(2‐pyridylmethylsulfanyl)‐1,3,4‐oxadiazole]cadmium(II)]‐di‐μ‐thiocyanato‐κ2N:S;κ2S:N]

The title compound, [Cd(NCS)₂(C₁₃H₁₀N₄OS)₂]_n, contains SCN⁻ anions acting as end‐to‐end bridging ligands which utilize both S and N atoms to link cadmium(II) centers into one‐dimensional double chains. The multidentate 5‐(4‐pyridyl)‐2‐(2‐pyridylmethylsulfanyl)‐1,3,4‐oxadiazole ligands behave as monodentate terminal ligands, binding metal centers only through the N atoms of the 4‐pyridyl groups. Two types of eight‐membered rings are formed by two SCN⁻ anions bridging Cd^II centers, viz. planar and chair conformation, which are alternately disposed along the same chain. Finally, chains define a two‐dimensional array through two different interchain π–π stacking interactions.