Electrochemical detection of in situ adriamycin oxidative damage to DNA

Adriamycin intercalation and in situ interaction with double helix DNA was investigated using a voltammetric DNA-biosensor. Oxidation and reduction of adriamycin molecules intercalated in double helix DNA were investigated in order to understand the in vivo mechanism of action with this anti-neoplasic drug. The results showed that the interaction of adriamycin with DNA is potential-dependent causing contact between DNA guanine and adenine bases and the electrode surface such that their oxidation is easily detected. A mechanism for adriamycin reduction and oxidation in situ when intercalated in double helix DNA immobilised onto the glassy carbon electrode surface is presented and the formation of the mutagenic 8-oxoguanine explained.     

In situ DNA oxidative damage by electrochemically generated hydroxyl free radicals on a boron-doped diamond electrode

In situ DNA oxidative damage by electrochemically generated hydroxyl free radicals has been directly demonstrated on a boron-doped diamond electrode. The DNA-electrochemical biosensor incorporates immobilized double-stranded DNA (dsDNA) as molecular recognition element on the electrode surface, and measures in situ specific binding processes with dsDNA, as it is a complementary tool for the study of bimolecular interaction mechanisms of compounds binding to DNA and enabling the screening and evaluation of the effect caused to DNA by radicals and health hazardous compounds. Oxidants, particularly reactive oxygen species (ROS), play an important role in dsDNA oxidative damage which is strongly related to mutagenesis, carcinogenesis, autoimmune inflammatory, and neurodegenerative diseases. The hydroxyl radical is considered the main contributing ROS to endogenous oxidation of cellular dsDNA causing double-stranded and single-stranded breaks, free bases, and 8-oxoguanine occurrence. The dsDNA-electrochemical biosensor was used to study the interaction between dsDNA immobilized on a boron-doped diamond electrode surface and in situ electrochemically generate hydroxyl radicals. Non-denaturing agarose gel-electrophoresis of the dsDNA films on the electrode surface after interaction with the electrochemically generated hydroxyl radicals clearly showed the occurrence of in situ dsDNA oxidative damage. The importance of the dsDNA-electrochemical biosensor in the evaluation of the dsDNA-hydroxyl radical interactions is clearly demonstrated.     

Electrochemical detection of in situ DNA damage induced by enzyme-catalyzed Fenton reaction. Part I: in phosphate buffer solution

We report on a biosensor for the electrochemical detection of the damage of DNA and of antioxidant protecting DNA. The biosensor was constructed by co-immobilization of DNA and glucose oxidase (GOx) on a glassy carbon electrode. Under aerobic conditions, GOx catalyzes the oxidation of glucose, and the hydrogen peroxide produced reacts with ferrous ions in a Fenton-type reaction to generate hydroxy radical. This was validated by UV–vis spectroscopy. The hydroxy radical can cause serious oxidative damage to DNA, and this can be detected by square wave voltammetry of the electroactive indicator Co(bpy) ₃ ³⁺ . The effects of pH value, incubation time, and the concentration of glucose and ferrous ion were optimized. The effects of the antioxidants ascorbic acid and aloe emodin on DNA damage were also investigated within the concentration range from 0.05 to 200?μM. This work provides an in-vitro model system to mimic the processes in oxidative DNA damage by a simple electrochemical approach.

Toxicity screening by electrochemical detection of DNA damage by metabolites generated in situ in ultrathin DNA-enzyme films

Rapid detection of DNA damage could serve as a basis for in vitro genotoxicity screening for new organic compounds. Ultrathin films (20-40 nm) containing myoglobin or cytochrome P450(cam) and DNA grown layer-by-layer on electrodes were activated by hydrogen peroxide, and the enzyme in the film generated metabolite styrene oxide from styrene. This styrene oxide reacted with double stranded (ds)-DNA in the same film, mimicking metabolism and DNA damage in human liver. DNA damage was detected by square wave voltammetry (SWV) by using catalytic oxidation with Ru(bpy)(3)(2+) (bpy = 2,2'-bipyridine) and by monitoring the binding of Co(bpy)(3)(3+). Damaged DNA reacts more rapidly than intact ds-DNA with Ru(bpy)(3)(3+), giving SWV peaks at approximately 1 V versus SCE that grow larger with reaction time. Co(bpy)(3)(3+) binds more strongly to intact ds-DNA, and its SWV peaks at 0.04 V decreased as DNA was damaged. Little change in SWV signals was found for incubations of DNA/enzyme films with unreactive organic controls or hydrogen peroxide. Capillary electrophoresis and HPLC-MS suggested the formation of styrene oxide adducts of DNA bases under similar reaction conditions in thin films and in solution. The catalytic SWV method was more sensitive than the Co(bpy)(3)(3+) binding assay, providing multiple measurements over a 5 min reaction time.     

Electrochemical detection of in situ DNA damage induced by enzyme-catalyzed Fenton reaction. Part II in hydrophobic room temperature ionic liquid

A hydrophobic room temperature ionic liquid, 1-butyl-3-methylimidazolium hexafluorophosphate ([BMIM][PF₆]), was applied as nonaqueous solvent for the generation of hydroxy radical (?OH) through glucose oxidase-catalyzed Fenton reaction. The enzyme catalyzes the oxidation of glucose, and the produced H₂O₂ further reacts with transition metal ions, generating hydroxyl radicals. They attacked DNA and led its damage. This was detected by square wave voltammetry (SWV) of the electroactive indicator Co(bpy) ₃ ³⁺ . It bound more strongly to intact DNA, and the SWV peak currents decreased at the potential of 0.064?V when DNA was damaged. The experimental results testified that the antioxidants, ascorbic acid, aloe-emodin and rutin, inhibited oxidative DNA damage by hydroxyl radicals. The method is promising for rapid, sensitive, and inexpensive detection of DNA damage.

Electrochemical derivatization of carbon surface by reduction of in situ generated diazonium cations

The derivatization of a glassy carbon electrode surface was achieved by electrochemical reduction of several in situ generated diazonium cations. The diazonium cations were synthesized in the electrochemical cell by reaction of the corresponding amines with NaNO2 in aqueous HCl. The versatility of the method was demonstrated by using six diazonium cations. This deposition method, which involves simple reagents and does not require the isolation and purification of the diazonium salt, enabled the grafting of covalently bounded layers which exhibited properties very similar to those of layers obtained by the classical derivatization method involving isolated diazonium salt dissolved in acetonitrile or aqueous acid solution. Cyclic voltammetry and electrochemical impedance spectroscopy carried out in aqueous solutions containing electroactive redox probe molecules such as Fe(CN)6(3-/4-) and Ru(NH3)6(3+) confirmed the barrier properties of the deposited layers. The chemical composition of the grafted layers was determined by X-ray photoelectron spectroscopy and surface coverage in the range 3 x 10(-10) to 6 x 10(-10) mol cm(-2) was estimated for films grown in our experimental conditions.     

Hydroxyl radicals electrochemically generated in situ on a boron-doped diamond electrode

The hydroxyl radicals electrochemically generated in situ on a boron-doped diamond (BDD) electrode have been investigated for the first time in different electrolyte media, over the whole pH range between 1 and 11. A more extensive characterisation of BDD electrochemical properties is very important to understand the reactivity of organic compounds towards electrochemical oxidation on the BDD electrode, which is related to their interaction with adsorbed hydroxyl radicals due to water oxidation on the electrode surface. An oxidation peak corresponding to the transfer of one electron and one proton was observed in pH <9 electrolytes, associated with the water discharge process and electrochemical generation of hydroxyl radicals, which can interact and enhance the electro-oxidation of organic compounds. In pH >9 electrolytes the electrochemical generation of hydroxyl radicals was not observed; ammonia buffer electrolyte gave a pH-independent peak corresponding to the ammonia oxidation reaction. Additionally, for most pH values studied, a few small peaks associated with the electrochemical interaction between non-diamond carbon species on the doped diamond electrode surface and the electrolyte were also seen, which suggests that the doped diamond is relatively unreactive, but not completely inert, and the electrogenerated hydroxyl radicals play a role as mediator in the oxidation of organics.     

Electrochemical detection in a microfluidic device of oxidative stress generated by macrophage cells

The release of reactive oxygen species (ROS) or reactive nitrogen species (RNS), i.e., the initial phase of oxidative stress, by macrophage cells has been studied by electrochemistry within a microfluidic device. Macrophages were first cultured into a detection chamber containing the three electrodes system and were subsequently stimulated by the microinjection of a calcium ionophore (A23187). Their production of ROS and RNS was then measured by amperometry at the surface of a platinized microelectrode. The fabricated microfluidic device provides an accurate measurement of oxidative release kinetics with an excellent reproducibility. We believe that such a method is simple and versatile for a number of advanced applications based on the detection of biological processes of secretion by a few or even a single living cell.     

金-石墨烯修饰电极电化学检测塑料瓶中双酚A

在离子液体碳糊电极(CILE)表面上采用一步电还原法制备了纳米金(nAu)-石墨烯(GR)复合膜修饰电极(nAu-GR/CILE).研究了双酚A(BPA)在nAu-GR/CILE上的电化学行为,BPA的电极反应过程为受吸附控制的不可逆过程;采用示差脉冲伏安法研究了BPA氧化峰电流和浓度之间的关系,在0.08～400.0...     

Chemically induced dynamic electron polarization generated through the interaction between singlet molecular oxygen and nitroxide radicals

An absorptive chemically induced dynamic electron polarization (CIDEP) was generated by the quenching of singlet oxygen by nitroxide radicals (TEMPO derivatives). The spin polarization decay time of the nitroxide (measured by time-resolved EPR) correlates with the lifetime of singlet oxygen (measured by singlet oxygen phosphorescence spectroscopy). In addition, a deuterium isotope effect on the spin polarization decay time was observed, a signature of singlet oxygen involvement. With use of isotope labeled nitroxides (15N, 14N), the relative spin polarization efficiencies of TEMPO, 4-oxo-TEMPO, and 4-hydroxy-TEMPO by singlet oxygen were determined. The relative spin polarization efficiencies (per quenching event) decrease in the order 4-hydroxy-TEMPO > TEMPO > 4-oxo-TEMPO, whereas an opposite trend was observed for the total quenching rate constants of singlet oxygen by the nitroxides where the order is 4-hydroxy-TEMPO < TEMPO < 4-oxo-TEMPO.     

Indirect detection of DNA damage

In this issue of Chemistry and Biology, Naegeli and coworkers show that the nucleotide excision repair system of mammalian cells detects bulky DNA adducts, not by recognition of the adduct per se, but by recognition of the undamaged partner strand in bulged form.     

X-ray induced damage in DNA monitored by X-ray photoelectron spectroscopy

In this work, the chemical changes in calf thymus DNA samples were analyzed by X-ray photoelectron spectroscopy (XPS). The DNA samples were irradiated for over 5 h and spectra were taken repeatedly every 30 min. In this approach the X-ray beam both damages and probes the samples. In most cases, XPS spectra have complex shapes due to contributions of C, N, and O atoms bonded at several different sites. We show that from a comparative analysis of the modification in XPS line shapes of the C 1s, O 1s, N 1s, and P 2p peaks, one can gain insight into a number of reaction pathways leading to radiation damage to DNA.     

Chemically induced dynamic nuclear polarization. Decarboxylation of photochemically generated benzoyloxy radicals

CIDNP has been studied during thermal decomposition, photolysis, and sensitized photolysis of benzoyl chloroacetyl peroxide. The ratio of the CIDNP intensities for the recombination products benzyl chloride and chloromethyl benzoate is dependent on the mode of decomposition, reflecting the extent of rapid decarboxylation of the primary formed benzoyloxy radicals.     

Electrochemical detection of DNA triplet repeat expansion

Hereditary neurodegenerative diseases are connected with the expansion of trinucleotide repetitive sequences in genomic DNA. Molecular diagnosis of these diseases is based on the determination of the triplet repeat length. Currently used methods involve PCR amplification followed by electrophoretic determination of the amplicon size. We propose a novel electrochemical technique based on hybridization of target DNA (tDNA) immobilized at magnetic beads with a reporter probe (RP) complementary to the triplet repeats (12 units per RP). The biotin-labeled RP is detected via an enzyme-linked electrochemical assay involving binding of streptavidin-alkaline phosphatase conjugate and transformation of electroinactive 1-naphthyl phosphate to electroactive 1-naphthol. Pyrimidine residues within sequences flanking the homopurine (GAA)n repeat in tDNA are premodified with osmium tetroxide, 2,2'-bipyridine (Os,bipy), introducing electroactive labels in tDNA. The length of the triplet expansion is calculated from the ratio of the intensities of electrochemical signals of hybridized RP/tDNA-Os,bipy. The normalized signal increases linearly with the repeat length between 0 and about 200 triplet units, allowing for discrimination between normal, premutated, and mutated alleles. Application of this method for the detection of the asymptomatic heterozygous carrier of expanded alleles is demonstrated.     

Oxyresveratrol protects against DNA damage induced by photosensitized riboflavin

Riboflavin can be photosensitized to produce reactive oxygen species. In the present study, a DNA damage assay was developed based on the photo reaction of riboflavin. In this test system, oxyresveratrol showed higher DNA protective effect than the well-known antioxidants Trolox and ascorbic acid. The results suggest potential applications for oxyresveratrol as an anti-aging agent and a riboflavin stabilizer.     

Electrochemical aptasensor for the determination of bisphenol A in drinking water

We present an electrochemical aptasensor for rapid and ultrasensitive determination of the additive bisphenol A (BPA) and for screening drinking water for the presence of BPA. A specific aptamer against BPA and its complementary DNA probe were immobilized on the surface of a gold electrode via self-assembly and hybridization, respectively. The detection of BPA is mainly based on the competitive recognition of BPA by the immobilized aptamer on the surface of the electrode. The electrochemical aptasensor enables BPA to be detected in drinking water with a limit of detection as low as 0.284 pg?mL^?1 in less than 30 min. This extraordinary sensitivity makes the method a most powerful tool for on-site monitoring of water quality and food safety.

Porous nanoballs formed through an in situ generated “framework” template

The unique hierarchic porous nanoballs were constructed through a controllable hydrolysis process in 40–60 vol.% ethanol aqueous solution. The effects of ethanol concentration, hydrolysis duration, solvent, heating way on the formation of the porous structures have been investigated. The samples were characterized by TEM, EDX, SEM, XRD, TG, and pH apparatus, etc. An in situ generated “framework” template was proposed to explain the formation of porous structure. The results showed that ethanol molecules enclosed in the “framework” played an important role in the formation of the porous structures. Importantly, the formation process of such nanoballs is useful for the structure control of porous materials.