Ab initio studies of three-membered ring formation through intramolecular nucleophilic substitution

Three-membered ring (3MR) forming processes of ⁻X(SINGLE BOND)CH₂(SINGLE BOND)CH₂(SINGLE BOND)F and ⁻CH₂(SINGLE BOND)C((SINGLE BOND)Y)(SINGLE BOND)CH₂(SINGLE BOND)F (X(DOUBLE BOND)CH₂, O, or S and Y(DOUBLE BOND)0 or S) through a gas phase neighboring group mechanism (S_Ni) are studied theoretically using the ab initio molecular orbital method with the 6–31+G* basis set. When electron correlation effects are considered, the activation (ΔG^≠) and reaction energies (ΔG⁰) are lowered by ca. 10 kcal mol⁻¹, indicating the importance of the electron correlation effect in these reactions. The contribution of entropy of activation (−TΔS^≠) at 298 K to ΔG^≠ is very small, and the reactions are enthalpy controlled. The ΔG^≠ and ΔG⁰ values for these ring closure processes largely depend on the stabilities of the reactants and the heteroatom acting as a nucleophilic center. The Bell–Evans–Polanyi principle applies well to all these reaction series. © 1997 John Wiley & Sons, Inc. J Comput Chem 18 : 1773–1784, 1997     

A density functional study of Fe(SINGLE BOND)N2, Fe(SINGLE BOND)N+2, and Fe(SINGLE BOND)N−2

The interaction of an iron atom with molecular nitrogen was studied using density functional theory. Calculations were of the all-electron type and both conventional local and gradient-dependent models were used. A ground state of linear structure was found for Fe(SINGLE BOND)N₂, with 2S + 1 = 3, whereas the triangular Fe(SINGLE BOND)N₂ geometry, of C_2v symmetry, was located 2.1 kcal/mol higher in energy, at least for the gradient-dependent model. The reversed order was found using the conventional local approximation. In Fe(SINGLE BOND)N₂, the N(SINGLE BOND)N bond is strongly perturbed by the iron atom: It has a bond order of 2.4, a vibrational frequency of 1886 cm⁻¹, and an equilibrium bond length of 1.16 Å: These values are 3.0, 2359 cm⁻¹, and 1.095 Å, respectively, for the free N₂ molecule. With the gradient-dependent model and corrections for nonsphericity of the Fe atom, a very small binding energy, 8.8 kcal/mol, was calculated for Fe(SINGLE BOND)N₂. Quartet ground states were found for both Fe(SINGLE BOND)N⁺₂ and Fe(SINGLE BOND)N⁻₂. The adiabatic ionization potential, electron affinity, and electronegativity were also computed; the predicted values are 7.2, 1.22, and 4.2 eV, respectively. © 1997 John Wiley & Sons, Inc.     

The hydroxyl radical reaction rate constant and products of ethyl 3-ethoxypropionate

The relative rate technique has been used to measure the hydroxyl radical (OH) reaction rate constant of ethyl 3-ethoxypropionate (EEP, CH₃CH₂(SINGLE BOND)O(SINGLE BOND)CH₂CH₂C(O)O(SINGLE BOND)CH₂CH₃). EEP reacts with OH with a bimolecular rate constant of (22.9±7.4)×10⁻¹² cm³ molecule⁻¹s⁻¹ at 297±3 K and 1 atmosphere total pressure. In order to more clearly define EEP's atmospheric reaction mechanism, an investigation into the OH+EEP reaction products was also conducted. The OH+EEP reaction products and yields observed were: ethyl glyoxate (EG, 25±1% HC((DOUBLE BOND)O)C((DOUBLE BOND)O)(SINGLE BOND)O(SINGLE BOND)CH₂CH₃), ethyl (2-formyl) acetate (EFA, 4.86±0.2%, HC((DOUBLE BOND)O)(SINGLE BOND)CH₂(SINGLE BOND)C((DOUBLE BOND)O)(SINGLE BOND)O(SINGLE BOND)CH₂CH₃), ethyl (3-formyloxy) propionate (EFP, 30±1%, HC((DOUBLE BOND)O)(SINGLE BOND)O(SINGLE BOND)CH₂CH₂(SINGLE BOND)C((DOUBLE BOND)O)(SINGLE BOND)O(SINGLE BOND)CH₂CH₃), ethyl formate (EF, 37±1%, HC((DOUBLE BOND)O)O(SINGLE BOND)CH₂CH₃), and acetaldehyde (4.9±0.2%, HC((DOUBLE BOND)O)CH₃). Neither the EEP's OH rate constant nor the OH/EEP reaction products have been previously reported. The products' formation pathways are discussed in light of current understanding of oxygenated hydrocarbon atmospheric chemistry. © 1997 John Wiley & Sons, Inc.     

Structures and vibrational frequencies of vanadium (V) oligomers: An ab initio study using effective core potentials

Ab initio molecular geometries and vibrational frequencies of various isolated vanadate species (VO³⁻₄, HVO²⁻₄, H₂VO⁻₄, and V₂O⁴⁻₇) were calculated using different pseudopotentials. The relative merits of these were assessed by comparing the calculated molecular parameters with the corresponding values obtained from calculations at all-electron levels and, whenever available, from X-ray studies for the salts. The calculations were extended to higher oligomers (V₃O⁵⁻₁₀, V₄O⁶⁻₁₃, and V₄O⁴⁻₁₂) using the pseudopotential whose basis functions are (10s5p5d)/[2s1p1d] (55/5/5) on vanadium and (4s4p)/[2s2p] (31/31) on oxygen, which yielded the best compromise between accuracy and computational effort. The results indicate a linear centrosymmetric geometry for the isolated V₂O⁴⁻₇ anion. The higher oligomers have less than 180° V(SINGLE BOND)O(SINGLE BOND)V angles, except the noncyclic tetraoligomer which has a linear central V(SINGLE BOND)O(SINGLE BOND)V angle (180°). The cyclic V₄O⁴⁻₁₂ species presents a planar structure with all the vanadium and bridging oxygen atoms in the same plane. This structure was alrea dy reported for the [(CH₃)CNH₃][V₄O₁₂] salt. The results suggest a lower stability of the linear V₄O⁶⁻₁₃ species, in agreement with previous reports. © 1996 by John Wiley & Sons, Inc.     

Synthesis and properties of polycarbosilanes with the meta-linkage bending unit by hydrosilylation polymerization

The polycarbosilanes (PCS) with meta-linkage bending unit ((SINGLE BOND)Me₂Si(SINGLE BOND)m(SINGLE BOND)C₆H₄(SINGLE BOND)Me₂Si(SINGLE BOND)CH₂CH₂(SINGLE BOND)) were successfully synthesized in mild conditions by hydrosilylation in the presence of [Pt{(CH₂(DOUBLE BOND)CHSiMe₂)₂O}₂]. The PCS obtained were soluble in various solvents owing to the lowering of the crystallinity. These properties are well compared with those of the PCS [(SINGLE BOND)Me₂Si(SINGLE BOND)p(SINGLE BOND)C₆H₄(SINGLE BOND)Me₂Si(SINGLE BOND)CH₂CH₂(SINGLE BOND)]_n. © 1996 John Wiley & Sons, Inc.     

Cyanide adsorbed on coinage metal electrodes: A relativistic density functional investigation

The adsorptive properties of cyanide (CN⁻) on coinage metal (M) electrodes (M=Cu, Ag, Au) have been investigated using a relativistic density functional method. The way to model the electrochemical potential applied to the electrodes is to consider the systems in the presence of a perturbative external field F. The field-perturbative approach is proven to be a suitable method in interpreting the observed spectral shifts with electrode potential. The calculated potential-dependent shifts of ω_{M(SINGLE BOND)CN} and ω_{C(SINGLE BOND)M} are similar for the three metals, in agreement with experiment observations. The relativistic effects are required to account for the similarity in the frequency shifts of ω_{M(SINGLE BOND)CN}. The calculated vibrational tuning rates dω_{C(SINGLE BOND)N}/dF are 6.61×10⁻⁷, 6.61×10⁻⁷, and 5.64×10⁻⁷ cm⁻¹/(V/cm) for M=Cu, Ag, and Au, respectively. The coupling of the M(SINGLE BOND)CN and C(SINGLE BOND)N internal modes contributes significantly (about 25%) to the size of the frequency shifts Δω_{C(SINGLE BOND)N} of the ligand. The effect of electric fields on the metal(SINGLE BOND)CN⁻ bonding is also investigated. It is shown that changes in the magnitude of CN⁻ to the metal donation and M(SINGLE BOND)CN bond strength occur under the influence of the electric field. © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 175–185, 1998     

π-Bonding contribution to restricted internal rotations in saccharides

Extensive semiempirical SCF-MO calculations confirm that the exo-anomeric effect in methyl O-, N- and S-glycosides deals with an interaction of π-character along the C₁(SINGLE BOND)Y₁ bond in a X₅(SINGLE BOND)C₁(SINGLE BOND)Y₁(SINGLE BOND)Me moiety (where X = O, S; Y = O, NH, S). The bond-order between orbitals of pπ symmetry on C₁ and Y₁ serves as a measure of all significant molecular orbital interactions responsible for the exo-anomeric stabilization. The set of simpler compounds X(SINGLE BOND)CH₂(SINGLE BOND)Y (X = OH, SH, SeH, TeH; Y = OH, SH, SeH, TeH, NH₂) on which the anomeric effect has been well studied was also calculated and it is noticeable that the π-bond-orders accord with the results of other analyses of the ab initio wave function accounting for the anomeric effect. Although the AM1 and the PM3 parameterizations of MNDO do not accurately reproduce the anomeric effect energetic, they do reproduce accordingly the expected variations in the molecular conformations of complex carbohydrates, and thus it follows that there are maximal π-bond-orders for the synclinal arrangement around the C₁(SINGLE BOND)Y₁ bond. In addition, the π-bond-orders show the same behavior for conformational preferences around the C₁(SINGLE BOND)C′₁ and the C₅(SINGLE BOND)C₆ bonds in methyl C-glycosides and in the hydroxymethyl group of α-D -glucose, respectively. © 1996 by John Wiley & Sons, Inc.     

Silaacetylene: A possible target for experimental studies

The equilibrium geometries and transition states for interconversion of the CSiH₂ isomers in the singlet electronic ground state are optimized at the MP2 and CCSD(T) levels of theory using a TZ2P basis set. The heats of formation, vibrational frequencies, infrared intensities, and rotational constants are also predicted. There are three energy minima on the CSiH₂ potential energy surface. Energy calculations at CCSD(T)/TZ2P(fd) + ZPE predict that the global energy minimum is silavinylidene (1), which is 34.1 kcal mol⁻¹ lower in energy than trans-bent silaacetylene (2) and 84.1 kcal mol⁻¹ more stable than the vinylidene isomer (3). The barrier for rearrangement 2→1 is calculated at the same level of theory to be 5.1 kcal mol⁻¹, while for the rearrangement 3→2 a barrier of 2.7 kcal mol⁻¹ is predicted. The natural bond orbital (NBO) population scheme indicates a clear polarization of the C(SINGLE BOND)Si bonds toward the carbon end. A significant ionic contribution to the C(SINGLE BOND)Si bonds of 1 and 2 is suggested by the NBO analysis. The C(SINGLE BOND)Si bond length of trans-bent silaacetylene (2) is longer than previously calculated [1.665 Å at CCSD(T)/TZ2P)]. The calculated carbon-silicon bond length of 2 is in the middle between the C(SINGLE BOND)Si double bond length of 1 (1.721 Å) and the C(SINGLE BOND)Si triple bond of the linear form HCSiH (4), which is 1.604 Å. Structure 4 is a higher-order saddle point on the potential energy surface. © 1996 by John Wiley & Sons, Inc.     

Magnetische Eigenschaften von Ti3−xMxO5-Phasen (M = V3+, Cr3+, Nb4+)

Magnetic Properties of Ti_3?xM_xO₅ Phases (M = V³⁺, Cr³⁺, Nb⁴⁺) The magnetic properties of Ti_3?xV_xO₅, Ti_3?xCr_xO₅, and Ti_3?xNb_xO₅ phases are reported. In the case of V³⁺ and Cr³⁺ the magnetic leaping-temperature decreases, however Nb⁴⁺ shift the phase-transition towards higher temperatures. All samples show a “memory-effect” in magnetic properties, i. e. the results of heating- and cooling-cycles are higher susceptibilities of the α-phase of Ti₃O₅. Endowed Ti₃O₅ phases show for the α- and β-Ti_3?xM_xO₅ til the leap Curie-Weiss characteristic in 1/X vs. temperature measurements. Exception is β-Ti_3?xNb_xO₅, its susceptibility is independend of the temperature up to x ? 0.3.     

Molecular structure and binding energies of monosubstituted hexacarbonyls of chromium,molybdenum, and tungsten: Relativistic density functional study

Relativistic density functional calculations have been carried out for the group VI transition metal carbonyls M(CO)₅L (M=Cr, Mo, W; L=OH₂, NH₃, PH₃, PMe₃, N₂, CO, OC (isocarbonyl), CS, CH₂, CF₂, CCl₂, NO⁺). The optimized molecular structures and M(SINGLE BOND)L bond dissociation energies, as well as the metal–carbonyl bond energy of the trans CO group, have been calculated. Besides the marked dependence of the trans M(SINGLE BOND)CO bond length on the type of ligand L, such an effect on the that bond energy is also observed. For the chromium compounds, the trans Cr(SINGLE BOND)CO bond length varies from 184 to 199 pm and its bond energy from 242 to 150 kJ/mol. For the molybdenum compounds, the range is 197 to 216 pm and 253 to 128 kJ/mol and, for tungsten, 198 to 214 pm and 293 to 159 kJ/mol. The observed trends can be explained with the π acceptor strength of the L ligand. © 1997 John Wiley & Sons, Inc. J Comput Chem 18 : 1985–1992, 1997     

Synthesis of polyesters as binders for deinkable inks. I. Structural analysis of the polyesterification between o-phthalic anhydride and neopentyl glycol in bulk at 200°C by high resolution 13C nuclear magnetic resonance (13C-NMR)

Analysis of the polyesterification in bulk without any external catalyst at 200°C of o-phthalic anhydride with neopentyl glycol (2,2-dimethyl-1,3-propanediol) with a mole ratio ([(SINGLE BOND) COOH]/[ (SINGLE BOND) OH]) = 0.7 has been carried out by high resolution ¹³C nuclear magnetic resonance (¹³C-NMR). Polyesters can be analyzed by ¹³C-NMR spectra because of the fact that both o-phthalic acid (o-phthalic anhydride) and neopentyl glycol carbons are sensitive to sequence effects. Spin-lattice relaxation times T₁, of quaternary, tertiary and secondary carbons in different structures are in the 0.1–6.5 s range depending on the neighboring residue effects in the polymer chain. © 1996 John Wiley & Sons, Inc.     

Density functional calculations on Jahn-Teller effect of tetrachloromethane cation

Density functional (DF) calculations of the tetrachloromethane cation and its most important competitive process, the formation of CCl⁺₃, were carried out to explain the possible stability of CCl⁺₄. From results obtained with B-LYP and B-P86 methods, it is possible to produce a slight Jahn-Teller (JT) effect for a C_s planar structure of the cation type CCl₂(SINGLE BOND)Cl(SINGLE BOND)Cl⁺ compatible with the experimental data obtained by electron-spin resonance spectroscopy. A complex of C_3v structure CCl⁺₃(SINGLE BOND)Cl which is similar to the previous one found in CF⁺₄ appears when symmetry-broken wave functions are used in HF-LYP and HF-P86 methods. Depending of the DF method employed, either one of the minima [C_s (planar) and C_3v] is the most stable and competes with the dissociation of the molecular ion to give CCl⁺₃. The JT stabilization energy is smaller when the JT active coordinates are considered. © 1997 John Wiley & Sons, Inc.     

C3(SINGLE BOND)Mα Bond contribution to polarizability tensor and 3J(C1Mα) NMR coupling constant in 1-X-3-M-bicyclo[1.1.1]pentanes

In the present work, the relationship between the large substituent effects on ³J(C₁H) in 1-X-3-M-bicyclo[1.1.1]pentanes, I , and the polarizability of the bridgehead C₃(SINGLE BOND)M_α bond is investigated. The existence of such a relationship is suggested by the finding that the effect of an electronegative substituent X on ³J(C₁M_α) couplings in I (M=H) is due to a distortion of the C₃(SINGLE BOND)H bond toward the C₁ center, which enhances the Fermi contact interaction. If such distortion originates in an electrostatic effect, then in other members of this series it can be expected that the substituent effects on ³J(C₁M_α) couplings should depend strongly on the C₃(SINGLE BOND)M_α bond polarizability. Two approaches are followed. First, the ab initio CLOPPA-IPPP method is applied to study the C₃(SINGLE BOND)M_α bond contribution to the molecular static polarizability tensor in I (M=H, F, CH₃). Such bond polarizabilities are found to follow the same trend as calculated as well as experimentally determined substituent effects on ³J(C₁M_α) couplings, which were measured as part of this work in I [X=H, Cl; M=F, CH₃ and X=OCH₃; M=Sn(CH₃)₃]. Second, ³J(C₁M_α) couplings (M=H, CH₃) are calculated at an ab initio level for X=H, F, and they are compared with those obtained in the parent compound (X=H) if the calculation is carried out in the presence of an inhomogeneous electric field. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 181–188, 1998     

An original route to poly[silylene-co-(2,4-disilapentane-2,4-diyl)] oligomers,efficient precursors of silicon carbide-based ceramics with variable C/Si ratios

Novel oligomers possessing a backbone formed of ((TRIPLE BOND)Si(SINGLE BOND)CH₂(SINGLE BOND)Si(TRIPLE BOND)) and (SINGLE BOND)Si(SINGLE BOND)_n units were prepared by the copolycondensation of bis(chlorosilyl)methanes and various dichlorosilanes in the presence of sodium, in refluxing toluene. The effect of the respective molar ratios of comonomers on the yields and the structure of the copolymers was investigated. The role of substituents on silicon atoms in the ability of these materials to provide convenient ceramic precursors upon pyrolysis was examined. When (TRIPLE BOND)Si(SINGLE BOND)H bonds were present, thermal cross-linking was readily performed and ceramics possessing variable C/Si ratios were prepared.     

Ab initio MO study of the solvent effect on the SN2 reaction of the trimethylsulfonium cation with chloride anion

A recently developed ab initio MO theory including solvent effects has been applied to a typical cation-anion reaction, the S_N2 reaction of the trimethylsulfonium cation with the chloride anion. In the gas phase, the trimethylsulfonium and chloride ions are unstabilized, and the reaction is expected to proceed rapidly. In aqueous solution, the reactant ions are largely stabilized, and the reaction has been predicted to be endothermic, with an activation energy of 30–40 kcal/mol. This potential energy profile, which agrees with experimental results, has been well elucidated by differential solvation at several stages of the reaction path. At the transition state of this reaction, the C and H atoms in the transferring CH₃ group are almost in a plane that is perpendicular to the Cl(SINGLE BOND)C(SINGLE BOND)S line, reflecting the concerted nature of the reaction. The population analysis has shown that the electrons in the C(SINGLE BOND)S bond are mostly withdrawn by the sulfur atom at the transition state and that the electron transfer from Cl to CH₃ occurs after the transition state. The calculated activation energy for the reaction in ethanol is smaller than that in water. This agrees with experiments. © 1996 John Wiley & Sons, Inc.     

Synthesis and characterization of poly(N-acyl or N-aroyl ethylenimines) containing various pendant functional groups. I. Copolymers with pendant olefin groups

Decenyl (D) and heptyl (H) oxazolines were copolymerized in o-dichlorobenzene solvent using methyl 4-nitrobenzenesulfonate as an initiator. A series of decenyl/heptyl oxazolines random copolymers (or DH copolymers) with a total degree of polymerization of 100 and narrow molecular weight distribution were obtained. These copolymers are considered as the poly(N-acylethylenimine)s with allyl pendant groups randomly attached to the far end of their polymethylene, (SINGLE BOND)(CH₂)₇(SINGLE BOND), side chains. The polymers were characterized by NMR, FT–IR. Both DSC and x-ray diffractometer demonstrated that the polymers are highly crystalline. © 1996 John Wiley & Sons, Inc.     

Benzazole-N(SINGLE BOND)BH3 adducts. Reductive transposition of 2-benzimidazole, 2-benzothiazole,and 2-benzoxazole N(SINGLE BOND)BH3 adducts to 1,3,2-benzimidazaborole, 1,3,2-benzoxaborole,and 1,3,2-benzothiazaborole

1,3,2-Benzimidazaborole, 1,3,2-benzoxaborole, and 1,3,2-benzothiazaborole were synthesized from the corresponding 2-benzazole N(SINGLE BOND)BH₃ and 2-benzazole S(SINGLE BOND)BH₃ adducts through a reductive transposition from the isolobal fragment X(SINGLE BOND)C(sp²) (DOUBLE BOND) N(sp²) (SINGLE BOND) B(sp³) (X (DOUBLE BOND) N, O, S) to the fragment X(SINGLE BOND)B(sp²) (DOUBLE BOND) N(sp²) (SINGLE BOND) C(sp³). N(SINGLE BOND)BH₃ substitution shifts to lower frequencies 4-H, C-3a, and C-7a resonances. The X-ray diffraction analysis of 2-(o-methoxyphenyl)benzothiazole N(SINGLE BOND)BH₃ adduct is reported. Two new tetracyclic boron-bridged compounds were observed as by-products (6,9-(ethyl)-diaza-2-oxa-1-bora[3,4,7,8]-dibenzobycyclo[4.3.0]-nona-3,7-diene, 6d, and 8-aza-9-oxa-2-thia-1-bora-[3,4,7,8]dibenzobycyclo[3.4.0]nona-3,7-diene, 15d, when 2-(o-methoxyphenyl)-1-ethylbenzimidazole-BH₃ 6b and 2-(o-methoxyphenyl)-benzothiazole-BH₃ 15b adducts were heated. © 1996 John Wiley & Sons, Inc.     

Molecular mechanics modeling of organic backbone of metal-free and coordinated ligands

A new molecular mechanics force field has been developed that takes into account the fact that, upon coordination to a transition metal ion, the redistribution of electron density leads to small but significant structural changes in the organic backbone of the ligand. Structural studies indicate that the perturbation by coordination to a metal ion extends to the α-carbon atom of the donor, the perturbation is roughly independent of the metal center for M²⁺ and M³⁺ and negligible for M⁺, and the perturbation of the C_α(SINGLE BOND)C_α′ bond is roughly independent of the donor atom. New parameter sets for oxalates, imidazoles, and pyrazoles are also presented. The refined parameters have been validated with a large number of monodentate, multidentate, and macrocyclic ligands. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 512–523, 1998     

Microporous Framework (Nb,Fe)-Silicate with Much Potential to Remove Rare-Earth Elements from Waters

Nanoparticles of a new small-pore metal silicate formulated as Na_2.9(Nb_1.55Fe_0.45)Si₂O₁₀ ⋅ xH₂O and exhibiting the structure of previously reported Rb₂(Nb₂O₄)(Si₂O₆) ⋅ H₂O have been synthesized under mild hydrothermal conditions. Replacement of the bulky Rb⁺ by smaller Na⁺ ions was accomplished by stabilizing the framework structure via partial occupancy of the Nb⁵⁺ sites by Fe³⁺ ions. Exploratory ion-exchange assays evidence the considerable potential of this new silicate to remove rare-earth elements from aqueous solutions.     

Calculation of solvation free energy using RISM theory for peptide in salt solution

We developed a robust, highly efficient algorithm for solving the full reference interaction site model (RISM) equations for salt solutions near a solute molecule with many atomic sites. It was obtained as an extension of our previously reported algorithm for pure water near the solute molecule. The algorithm is a judicious hybrid of the Newton–Raphson and Picard methods. The most striking advantage is that the Jacobian matrix is just part of the input data and need not be recalculated at all. To illustrate the algorithm, we solved the full RISM equations for a dipeptide (NH₂(SINGLE BOND)CHCH₃(SINGLE BOND)CONH(SINGLE BOND)CHCH₃(SINGLE BOND)COOH) in a 1 M NaCl solution. The extended simple point charge (SPC/E) model was employed for water molecules. Two different conformations of the dipeptide were considered. It was assumed for each conformation that the dipeptide was present either as an un-ionized form or as a zwitterion. The structure of the salt solution near the dipeptide and salt effects on the solvation free energy were also discussed. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 1724–1735, 1998