Preferential protonation and methylation at the nitrogen atoms of N,N-dimethylamino derivatives of pyridine

The relative reactivity toward protonation and methylation of the two nitrogen atoms in N,N-dimethylaminopyridines has been examined by ¹H NMR. The ring position of the dimethylamino group has no influence on protonation, which occurs in all the derivatives at the heterocyclic nitrogen. The N-methylation reaction does not follow a homogeneous behaviour, occurring at the exocyclic nitrogen in the 2-substituted dimethylamino derivative. The electronic characteristics of the molecules, determined by MO calculations at a semi-empirical level, indicate that both protonation and methylation should occur at the heterocyclic nitrogen; the calculated relative stabilites, however, of the N-protonated and N-methylated forms are in full agreement with the experimental results, and it appears that the anomalous behaviour of 2-dimethylaminopyridine in the N-methylation reaction is caused by steric factors.     

Insights into the photophysics,protonation and Cu2+ ion coordination behaviour of anthracene-9,10-dione-based chemosensors

Carboxylic acid–diamine-based Cu²⁺ chromogenic sensors (3 and 4) exhibited colour switching from red to blue with good sensitivity and selectivity towards Cu²⁺ among other physiologically important alkali, alkaline earth and heavy metal ions. This colour-switching phenomenon arises due to selective deprotonation of aryl amine NH by Cu²⁺. Significantly, chemosensor 3 (λ_max 492 nm) shows multiple modes of complexation towards Cu²⁺. It is very much evident from the appearance of blue colour (λ_max 615 nm) at pH >7.0 and yellow colour (λ_max 465 nm) at pH < 4.0. In addition, chemosensor 3 exhibits a unique logic gate system that involves ‘INHIBIT’ and ‘TRANSFER’ logic gates.     

A chelating beta-diketonate/phenoxide ligand and its coordination behavior toward titanium and scandium

Dibenzoylmethane derivatives with one (L1H2) or both (L2H3, L3H3) benzenes linked at their ortho positions to 4,6-di-tert-butylphenol moieties by two-carbon linkers have been synthesized. The mono-beta-diketone-monophenol ligand L1H2 is metalated by titanium alkoxides to form the homoleptic complex (L1)2Ti and heteroleptic complexes (L1)Ti([OCH2CH2]2NR) (R = H, CH3), and reacts with Cp3Sc to form CpSc(L1). These are the first examples of complexes of a beta-diketonate ligand which is further chelating to a single metal center. Crystallographic analysis of (L1)2Ti indicates that the 10-membered ring allows chelation of the phenoxide with little strain, and both fac and mer geometries are accessible in solution. Protonolysis of the second cyclopentadienyl ring of Cp3Sc appears to take place by an indirect, Cp3Sc-catalyzed pathway.     

Versatile routes toward functional, water-soluble nanoparticles via trifluoroethylester-PEG-thiol ligands

This paper reports the synthesis of a trifluoroethylester-PEG-thiol ligand (TFEE-PEG-SH) and its use to create water-soluble, chemically functional Au metal and FePt magnetic nanoparticles. The trifluoroethylester terminus facilitates attachment of any primary-amine-containing molecule via amide bond formation at room temperature without the use of coupling agents. Three possible routes of nanoparticle functionalization are demonstrated: synthesis of Au nanoparticles in the presence of functionalized R-PEG-SH; ligand-exchange of R-PEG-SH onto both Au and FePt nanoparticles; and exchange of TFEE-PEG-SH onto Au nanoparticles followed by subsequent amide condensation. A series of primary-amine-containing molecules, including biotin and fluorescamine, are easily attached to the water-soluble particles, and the resulting materials are characterized by NMR, UV-visible absorption, and emission spectroscopies.     

Synthesis of a large amino-phenolic cage. Synthesis, crystal structures, and acid-base and coordination behavior toward cations and anions

The synthesis and characterization of the new polyaza-phenolic-macrobicycle 32-hydroxy-1,4,7,10,13,16,19,22-octaazatricyclo-[11.11.7.1(26,30)]-diatriconta-26,28,Delta(30,32)-triene (L) are reported. L incorporates a 2,6-dimethyl-phenolic unit bridging two opposite amine functions of the [24]aneN(8) polyazamacrocyclic base to obtain a large cage. The basicity and binding properties of L toward Cu(II), Zn(II), and Cl(-) were determined by means of potentiometric measurements in aqueous solution (298.1 +/- 0.1 K, I = 0.15 mol dm(-3)). L can add up to six acidic protons, yielding the H(5)L(5+) species or the H(6)L(6+) species, depending on the ionic medium used. The molecular topology of L permits the formation of a highly positive three-dimensional cavity in the polyprotonated species that is able to host the chloride anion. This was detected both using potentiometric data, log K = 41.33 for the reaction L + 6H(+) + Cl(-) = H(6)LCl(5+), and in (35)Cl NMR experiments that showed interactions also with the H(5)L(5+) and H(4)L(4+) species. The anion is probably hosted inside the three-dimensional cavity of L, and stabilized by H-bonding interactions with the ammonium groups, as depicted in the crystal structure of the H(6)L(6+) cation reported. L forms mono- and dinuclear complexes with all the metal ions investigated; the dinuclear species are the only existing species with an L:M(II) molar ratio of 1:2 at pH higher than 6. The phenolate oxygen atom coordinates the two metal ions in a bridged disposition, drawing them inside the macrobicyclic cavity. The two metals were found to be quite isolated by the medium, and were coordinated by all the amine groups of L, as shown by the crystal structure of the dinuclear [Zn(2)H(-1)L](3+) species. This species can bind guests such as hydroxide and phosphate anions. Studies of anion binding in aqueous solution using pyrochatecol violet as the sensing guest revealed that the [Zn(2)H(-1)L](3+) species is able to bind one phosphate at physiological pH.     

Synthesis of coordination compounds of dibutyltin(IV) with Schiff bases having nitrogen donor atoms

The new dibutyltin(IV) complexes of Schiff bases is designed & synthesis from the interaction between various substituted amines and aromatic aldehyde with general formula Bu₂Sn(L^1-7)₂Cl₂. Where L¹: (E)-4-chloro-N-(thiophen-2-ylmethylene) aniline; L²: (E)-2-chloro-N-(3,4,5-trimethoxybenzylidene) aniline; L³: (E)-N-((1H-indol-3-yl) methylene)-4-chloro-2-nitroaniline; L⁴: (E)-4-nitro-N-(3,4,5-trimethoxybenzylidene) aniline; L⁵: (E)-N-(3,4,5-trimethoxybenzylidene) aniline; L⁶: (E)-4-nitro-N-(thiophen-3-ylmethylene) aniline; L⁷: (E)-4-chloro-2-nitro-N-(pyridin-3-ylmethylene) aniline. Analytical and spectroscopic methods, such as molar conductance measurement, UV–Vis, IR, NMR, and DFT studies, have been used to describe newly synthesised compounds. The DFT studies have also provided confirmation regarding the complexes' geometry. The results of the Tauc equation indicate that the fundamental band gap of the compound [Bu₂Sn(L⁵)₂Cl₂] is 2.670 eV, which is in agreement with the findings of DFT studies, which indicate that the band gap is 2.657 eV. The bactericidal effects of Schiff bases and their dibutyltin(IV) complexes were tested. The antibacterial activity of organotin(IV) complexes is enhanced in comparison to that of the free ligands.     

Squaraines as reporter units: insights into their photophysics, protonation, and metal-ion coordination behaviour

The synthesis, photophysical properties, protonation, and metal-ion coordination features of a family of nine aniline-based symmetrical squaraine derivatives are reported. The squaraine scaffold displays very attractive photophysical properties for a signalling unit. These dyes show absorption and weakly Stokes-shifted, mirror-image-shaped emission bands in the visible spectral range and there are no hints of multiple emission bands. The mono-exponential fluorescence decay kinetics observed for all the derivatives indicate that only one excited state is involved in the emission. These data stress the interpretation that squaraines can be regarded as polymethine-type dyes. From a coordination chemistry point of view, the squaraines possess four potential binding sites; that is, two nitrogen atoms from the anilino groups and two oxygen atoms from the central C(4)O(2) four-membered ring. These coordination sites are part of a cross-conjugated pi-system and coordination events with protons or certain metal ions affect the electronic properties of the delocalised pi-system dramatically, resulting in a rich modulation of the colour of the squaraines. The absorption band at around 640 nm is blue-shifted when coordination at the anilino nitrogen atoms occurs, whereas coordination to the C(2)O(4) oxygen atoms results in the development of red-shifted bands. Addition of more than one equivalent of protons or metal cations could additionally entail mixed N,O- or N,N-coordinated complexes, manifested in the development of a broad band at 480 nm or complete bleaching in the visible range, respectively. Analysis of the spectrophotometric titration data with HYPERQUAD yielded the macroscopic and microscopic stability constants of the complexes. Theoretical modelling of the various protonated species by molecular mechanics methods and consideration of some of the title dyes within the framework of molecular chemosensing and molecular-scale "logic gates" complement this contribution.     

Acetylation and methylation of flavins and the effects on isoalloxazinc ring protonation

The acetylation of N¹⁰-(poly)hydroxy side chains of 7,8-dimethylisoalloxazines has been accomplished in conventional ways using perchloric acid as catalyst with excess acetic anhydride in acetic acid for flavins or in pyridine for the coenzyme, D -riboflavin-5′-phosphate (FMN). Although complete acetylation of the primary and secondary alcoholic functions of flavins with various hydroxyalkyl chains occurs, the primary product purified by DEAE-cellulose chromatotraphy of the reaction with FMN, followed by neutralization, is the 2′,3′-diacetyl derivative. Diacetyl FMN and other acetylated flavins exhibit the usual absorption spectra of prolonated isoalloxazinium compounds, with λ max values of 390, 264, and 222 nm, only upon greater acidification than necessary for their hydroxy or especially deoxy counterparts. A similar though less marked effect is found with flavins methylated by treatment with methyl iodide and silver oxide in dimethylformamide. Protonation of the isoalloxazine ring, which occurs on the most basic nitrogen 1, is most effectively impaired by acetylation or methylation of the proximal 2′-hydroxyl group.     

A quantum theory atoms in molecules investigation of Lewis base protonation

This investigation uses atomic properties derived from the quantum theory of atoms in molecules formalism to rationalize the infrared intensity of the stretching vibration that arises as a Lewis base (B) is protonated (B‐H mode). Moreover, the interacting quantum atom (IQA) partition is employed to evaluate the energetics of protonation. All calculations are performed at the CCSD/cc‐pVQZ level except by the IQA analysis, which is carried out by means of the B3LYP/cc‐pVQZ//CCSD/cc‐pVQZ treatment. First, an efficiency scale is established for Lewis bases in terms of the electronic charge transfer potential. Next, this study shows that the intensity of the B‐H stretching depends mostly on the electronic charge amount transferred to the proton. Thus, intensity data provide empirical assessment of Lewis base charge transfer efficiency. Finally, the group separation observed during correlation of proton affinities and electronic charge transfer potential is explained by the interaction energy between fragments of the protonated system.     

Conformational analysis of 2-methyl-2-bora-1,3-diheterocyclohexanes with oxygen,nitrogen, and sulfur atoms in the ring

Russian Journal of Organic Chemistry -     

Synthesis,characterization and coordination behavior of 2-(1-carboxyl-2-hydroxyphenyl)thiazolidine

The reaction of 3-formylsalicylic acid with 2-aminoethanethiol produces 2-(1-carboxyl-2-hydroxyphenyl)thiazolidine (H₂chptz) which remains in equilibrium in solution with its corresponding Schiff base, 3-carboxysalicylidenethioethanolimine (H₃mcsalim) having an NSO-donor set of atoms. The reactions of the thiazolidine ligand with different metal salts leading to the synthesis of many new metal complexes and organometallic derivatives have been studied. For all the complexes the dianion of the Schiff base, H₃mcsalim acts as a tridentate NSO donor ligand. The reactions of [(Hmcsalim)Ti(π-C₅H₅)Cl] and [(Hmcsalim)Sn(Me)Cl], isolated in this study, with Me₃SiE (where, E stands for SMe, NMe₂ and C≡CPh) have also been studied. The elemental analyses, magnetic susceptibilities, molar conductance values, EPR-study, CV, molecular weights and spectroscopic (UV-Vis, IR, ¹H NMR) data characterize all the compounds under study. Based upon these data the geometry of the compounds has also been proposed.     

The preperation and coordination properties of 1,4-diaza-3-methylbutadiene-2-ylpalladium(II) complexes with different substituents on the imino nitrogen atoms

The complexes trans-[PdCl{$\text{C(=NR)C}$(ME)=NR'} (PPh₃)₂] (R=C₆H₁₁,p-C₆H₄OMe; R$\text{.}\text{?}$=p-C₆H₄OMe, Me) containing a σ-bonded 1,4-diaza-3-menthyl-butadiene-2-yl group with different substituents on the nitrogen atoms have been prepared by two routes. The first involves initial methylation of the mixed isonitrile complex [PdCl₂(CNR)(CNR')]by HgMe₂, followed by reaction with PPh₃ ($\text{Pd}\text{PPh}{}_3$molar ratio $\text{1}\text{2}$). The second method involves condensation of primary aliphatic amines with the carbonyl group of the 1-azabut-1-en-3-one-2-yl moiety of the complex trans-[PdCl{$\text{C(=NR)C}$(Me) = 0} (PPh₃)₂]. The 1,4-diaza-3-methylbutadiene-2-yl derivatives act through their imino nitrogen atoms as chelating ligands towards anhydrous metal chlorides MCl₂ (M = Co, Ni, Cu, Zn). Magnetic moment measurements and the far-infrared and electronic spectra of these adducts indicate an essentially pseudo-tetrahedral configuration at M in the solid and in solution. With the ZnCl₂ adducts, the ¹H NMR pattern for the phenyl protons of the p-methoxyphenyl N-substituents dependss upon the position of the substituent i the 1,4-diazabutadiene chain.     

1-Azabicyclo[3.3.1]nonan-2-one: nitrogen versus oxygen protonation

Protonation of typical unstrained amides and lactams is heavily favored at oxygen. In contrast, protonation of the highly distorted lactam 1-azabicyclo[2.2.2]octan-2-one is heavily favored at nitrogen. What structures occupy "crossover boundaries" where N- and O-protonation are nearly equienergetic? Density function theory calculations at the B3LYP/6-31G* level, as well as QCISD(T)/6-31G* calculations, predict that 1-azabicyclo[3.3.1]nonan-2-one favors N-protonation at nitrogen only very slightly (<2.0 kcal/mol; "gas phase") over O-protonation. (1)H and (13)C NMR as well as ultraviolet (UV) studies of this lactam, in its combination with sulfuric acid, confirm predominant protonation at nitrogen. Although the calculations very slightly favor the N-protonated chair-chair conformation, experimental spectra clearly support the N-protonated boat-chair. Broadened resonances in the (13)C NMR spectrum suggest an exchange phenomenon. Variable-temperature studies of the (13)C NMR spectra support dynamic exchange between the major tautomer (N-protonated) and the minor tautomer (O-protonated) in a roughly 4:1 mixture. The findings also support the published prediction that a twisted bridgehead lactam with the nitrogen lone pair (n(N)) as HOMO will protonate at nitrogen.     

The coordination chemistry ofN,N′-ethylenebis(2-acetylpyridine imine) andN,N′-ethylenebis(2-benzoylpyridine imine); two potentially tetradentate ligands containing four nitrogen atoms

Summary New complexes of the general formulae [ML_A(H₂O)₂]-Cl₂ (M=Ni or Cu), [ML_AX₂] (M=Co or Cu; X=Cl or Br), [NiL_ABr₂]·H₂O, [ML_A] [MCl₄] (M=Pd or Pt), [NiL_B(H₂O)₂]Cl₂·2H₂O, [ML_BCl₂] (M=Co, Ni, Cu, Pd or Pt; X=Cl or Br) and [ML_B] [MCl₄] (M=Pd or Pt), where L_A=N,N-ethylenebis(2-acetylpyridine imine) and L_B=N, N-ethylenebis(2-benzoylpyridine imine), have been isolated. The complexes were characterized by elemental analyses, conductivity measurements, t.g./d.t.g. methods, magnetic susceptibilities and spectroscopic (i.r., far-i.r., ligand field,¹Hn.m.r.) studies. Monomeric pseudo-octahedral stereochemistries for the Co^II, Ni^II and Cu^II complexes andcis square planar structures for the compounds [ML_BX₂] (M=Pd or Pt; X=Cl or Br) are assigned in the solid state. The molecules L_A and L_B behave as tetradentate chelate ligands in the Co^II, Ni^II, Cu^II and Magnus-type Pd^II and Pt^II complexes, bonding through both the pyridine and methine nitrogen atoms. A bidentateN-methine coordination of the Schiff base L_B is assigned in the [ML_BX₂] complexes (M=Pd or Pt; X=Cl or Br). The anomalous magnetic moment values of the Co^II complexes are discussed.     

Versatile approach toward the self-assembly of heteromultimetallic salen structures

A general route is presented toward the template-directed preparation of self-assembled heteromultimetallic salen structures using noncovalent coordinative metal-ligand interactions. Various higher order assemblies have been studied in detail using a combination of NMR spectroscopy and X-ray crystallography.     

Effects of protonation and metal coordination on intramolecular charge transfer of tetrathiafulvalene compound

A protonated bifunctional pyridine-based tetrathiafulvalene (TTF) derivative (DMT-TTF-pyH)NO3 and a copper(II) complex Cu(acac)2(DMT-TTF-py)2 have been obtained and studied. Electronic spectra of the protonated compound show a large ICT (intramolecular charge transfer) band shift (Deltalambda=136 nm) compared with that of the neutral compound. Cyclic voltammetry also shows a large shift of the redox potentials (DeltaE1/2(1)=77 mV). Theoretical calculation suggests that the pyridium substituent is a strong pi-electron acceptor. Crystal structures of the protonated compound and the metal complex have been obtained. The dihedral angle between least-squares planes of the pyridyl group and the dithiole ring might reflect the intensity of the ICT effect between the TTF moiety and the pyridyl group. It is also noteworthy that the TTF moiety could be oxidized to TTF2+ dication by Fe(ClO4)(3).6H2O when forming a metal complex, while the protonated TTF derivative can only be oxidized to the TTF*+ radical cation by Fe(ClO4)(3).6H2O even with an excess amount of the Fe(III) salt, which can be used to control the oxidation process to obtain neutral TTF, TTF*+ radical cation, or TTF2+ dication.