Synthesis,spectral studies and quantum-chemical investigations on S-benzyl β-N-(4-NN biscynodiethylaminophenylmethylene)dithiocarbazate

A new Schiff base of S-benzyldithiocarbazate has been synthesized by the 1:1 condensation of 4-NN biscynodiethylaminobenzaldehyde and S-benzyldithiocarbazate. The structure of Schiff base was determined by FT-IR and ¹H NMR spectroscopic data. The synthesized Schiff base molecule has been subjected to theoretical studies by using semi-empirical AM1 and PM3 quantum-chemical methods. The molecular geometry, vibration frequencies, HOMO–LUMO energy gap, molecular hardness (η), ionization energy (IE), electron affinity (EA), total energy and dipole moment were analyzed. The experimental results of the compound have been compared with theoretical results and it is found that the experimental data show good agreement with calculated values.     

An ab initio theoretical study of the stereoisomers of tetrahydrocannabinols

An extensive theoretical study of the stereoisomers of tetrahydrocannabinols has been performed at the ab initio HF/6-31G^* and B3LYP/6-31G^* levels. Effects of solvation were calculated with the Onsager model (with full geometry optimization), SCRF with Tomasi's PCM, and isodensity polarization continuum models. Single-point MP2//HF/6-31G^* calculations were carried out. Frequency calculations for all the isomers at the HF/6-31G^* level and for two natural isomers ¹-THC-RR and ⁶-THC-RR at the B3LYP/6-31G^* level were performed. Our results support the findings of the previous AM1 studies that the orientation of the carbocyclic ring and its C1 substituent with respect to the phenyl group hydroxyl oxygen play the major role in the activity. The calculated values of the LUMO energy (lowest unoccupied molecular orbital) and the hardness of the stereoisomers show that for the trans isomers it is easier to remove one electron from its HOMO (highest occupied molecular orbital) to the LUMO and easier to accept an electron from the receptor binding site than for the cis isomers. Combining geometric features (the orientation of the carbocyclic ring and its C1 substituent with respect to the phenyl group hydroxyl oxygen) with electronic features (LUMO and hardness), we explain the activity differences among the stereoisomers.     

1,2,3-triazol-1-imines. 2. Electric dipole moments and semiempirical studies of some 2-aryl-N-benzoyl-4,5-dimethyl-1,2,3-triazol-1-imines

Electric dipole moments of some 2-aryl-N-benzoyl-4,5-dimethyl-1,2,3-triazol-1-imines were measured in carbon tetrachloride solution and the results compared with those derived computationally using MNDO, AM1 and PM3. Good correlation of the dipole moments with σ⁺ substituent constants was obtained.     

Comparative study of the electronic structure of pregnanolones by ab initio theory

Pregnanedione (5β‐pregnane, 3,20‐dione), pregnanolone (3β‐hydroxy‐5β‐pregnan‐20‐one), and epipregnanolone (3α‐hydroxy‐5β‐pregnan‐20‐one) result from the 5β‐reduction of progesterone [4‐pregnene, 3‐20‐dione (P)]. These P metabolites induce anesthesia and smooth muscle relaxation (nongenomic actions). In the present study, geometries and electronic structure of these steroids were assessed by ab initio calculations using the 6‐31G* basis set. Consequently, bond distances, valence angles, and dihedral angles were measured. In addition total energy, frontier orbitals, i.e., highest occupied molecular orbital (HOMO), lowest unoccupied molecular orbital (LUMO), dipole moment, and electrostatic potentials were calculated. Total energy was higher for P, followed by pregnanedione. Pregnanolones, the hydroxylated progestins, showed the lower energies. Concerning frontier orbitals, P showed the highest HOMO energy and the lowest LUMO energy. Pregnanedione showed lower HOMO and LUMO energy values than pregnanolone and epipregnanolone. P showed both HOMO and LUMO located at the A ring, including the π bond at C4, C5, and the carbonyl at C3. The HOMO in pregnanedione was included mostly in the A ring and the C3 carbonyl group, while the LUMO was shared by the carbonyl groups at C3 and C20. The frontier orbitals of pregnanolone and epipregnanolone were quite similar. The HOMO in both steroids included the B, C, and D rings and the carbonyl at C20. The LUMO was also similar in both pregnanolones including mostly the carbonyl at C20. The dipole moment was shorter for P and pregnanedione and directed toward the acetyl side chain at C17. Pregnanolone and epipregnanolone showed the dipole moment vector larger and directed toward the A ring. The electrostatic potentials were related mostly with the lone pairs of electrons from the oxygens. By the total energy and frontier orbitals energies of the hormones studied, it is concluded that the metabolism of progesterone toward its 5β‐reduced metabolites might be rationalized from the theoretical chemistry point of view. Besides, the importance of the A/B ring cis configuration, dipole moment, and electrostatic potential are highlighted as possible improving elements of molecular interactions to explain the nongenomic biological action of 5β‐reduced progestins. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 71: 433–440, 1999     

Ab initio assessment of the electronic structure of 5α-reduced progestins

Progesterone (P) yields to 5α-reduced progestins, namely 5α-pregnanedione (DHP), tetrahydroprogesterone (THP), and allopregnanolone (ALLO-P). The geometries and electronic structure of these steroids were assessed by ab initio calculations using the 6-31G* basis set. The parameters measured were bond distances, valence angles, and dihedral angles. Likewise, the following were calculated: total energy; frontier orbitals, i.e., highest occupied molecular orbital (HOMO); lowest unoccupied molecular orbital (LUMO); dipole moment; atomic charges; and electrostatic potentials. The frontier orbitals of P were located at the π-double bond. However, the HOMO of the 5α-progestins was extended into the molecule, while the LUMO was confined at the C20 carbonyl group. The atomic charges, electronic density surfaces and electrostatic potentials showed patterns according to the stereochemical arrangement of the C3 and C20 carbonyl and hydroxyl functional groups. Interestingly, P and THP showed the larger dipole moment and high electronic density at the A-ring because the double bond and the 3α-hydroxy group, respectively. The present results might explain to some extent the metabolism of the studied progestins. Similarly, some physicochemical properties, such as dipole moments and electrostatic potentials, seem related with important biological actions such as uterine contractility and control of gonadotropin secretion. © 1998 John Wiley & Sons, Inc. Int J Quant Chem 67: 329–338, 1998     

Inductive effect of substituents on the dipole moment of α-substituted vinyl methyl ether

Dipole moments of several α-substituted vinyl methyl ethers R(OMe)C:CH₂; R = Me, Et, i-Pr, t-Bu, cyclopropyl, vinyl, Ph) have been determined by the Halverstadt-Kumler method in benzene solution at 293 K. The square of the total dipole moment μ_r was found to be a linear function of the Taft's inductive constant σ_r^*: μ_r²/D²=(0.619±0.033)+(1.092±0.10) σ_r^*. The inductive contribution of the substituent R on the total dipole moment may be expressed by the equation μ_j/D = ?0.52 σ^* + 0.25. This is in good agreement with the corresponding equation for the dipole moments of alkyl-substituted ethenes: μ_i/D = ?0.58 σ^* + 0.28 (based on dipole moments obtained by PCILO calculations).     

Medium Effect on the Rotational Isomerism in 1,3,5-Triacetylbenzene

Summary. The optimal geometries, energies, polarities, infrared frequencies, and intensities of the non-polar and polar conformers of 1,3,5-triacetylbenzene were calculated using DFT/B3LYP/6-311G** and semi-empirical (AM1 and PM3) methods. All the methods revealed that the non-polar conformer prevails in vacuum. The infrared spectra in the solid state, in Ar matrix, and in liquid solutions as well as the dipole moments of 1,3,5-triacetylbenzene in many solvents show the distinct influence of the environment on the non-polar conformer ⇌ polar conformer equilibrium. The effect of solvent polarity on the standard Gibbs energy of this conformational equilibrium is quantitatively discussed in terms of the continuum-homogenous dielectric model.     

DFT Theoretical Calculation of the Site Selectivity of Dihydroxylated (5, 0) Zigzag Carbon Nanotube

Functionalization is an important method to change electrical and thermodynamic properties of carbon nanotubes. In this study, the effect of functionalization of a single-walled carbon nanotube (SWCNT) was investigated with the aid of density functional theory. For this case, a (5, 0) zigzag SWCNT model containing 60 C atoms with 10 hydrogen atoms added to the dangling bonds of the perimeter carbons was used. To model hydroxyl CNT two terminal H atoms were replaced by two –OH groups. All the functionalized CNTs are thermodynamically more stable and have higher dipole moment with respect to the pristine CNT. Depending on the positions of hydroxyl groups on CNT five isomers of C₆₀H₈(OH)₂ were obtained. The structure of these five isomers and molecular properties such as the HOMO–LUMO gaps, the dipole moments, and the density of state were calculated. Our results indicate that the HOMO–LUMO gap strongly depends on the placement of the hydroxyl groups on the nanotubes. The isomers were hydroxyl groups locate on the anti-position show the highest distortions in the structure of the CNT.

     

Dipole moment and tautomeric form of 3(5)-nitropyrazole in dioxane solution

The dipole moments of 3(5)-nitropyrazole, its methyl-substituted derivatives, and H-complexes with dioxane were measured experimentally and estimated byab initio calculations (6-31G^* basis set). Comparison of the experimental and calculated dipole moments suggests a shift of the tautomeric equilibrium toward the 3-nitroisomer. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 2202–2203, November, 1999.     

Hydration and protonation ofO-vinylacetoxime in the gas phase: anab initio study

Ab initio HF/6–31G^* calculations ofO-vinylacetoxime monohydrates and cations were performed. Each conformer forms two stable H-complexes with participation of N and O atoms. The former have planar heavy-atom skeletons, whereas the water molecule in the latter is located above the plane of the proton-acceptor complex. The complexes stabilized by N...HO and O...HO bonds have different dipole moments and frequencies of the OH stretching vibrations. The most energetically favorable cation is formed by adding a proton to the C_β atom of the vinyl group ofO-vinylacetoxime. Theap,ap-conformer (ap is antiperiplanar) of this cation is 6.5 and 34.9 kcal mol⁻¹ more stable than the onium cations with the NH⁺ and OH⁺ fragments, respectively, and is characterized by polarization and appreciable lengthening of the N−O and C=C bonds. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 597–600, April, 2000.     

Vibrational spectrum of ethynol: AB initio calculation and matrix isolation studies

Ab initio calculation of the harmonic force field of ethynol have been performed. A 6-31G^** basis set was used and electron correlation was taken into account by applying perturbation theory carried to second order (MP2). After application of experimental scaling factors, vibrational frequencies have been computed. From numerical differentiation of the dipole moments, intensities of the vibrational transitions have been derived. With the help of the harmonic force field the quartic centrifugal distortion constants have been obtained. The reactions OH + CH₃CCH, OH + HC₄H, H+ C₃O₂ and Ar^* + HCCCOOH have been tried to produce ethynol. The reaction products were frozen in an argon matrix and their IR spectrum recorded. Many new absorption lines appeared but there was no evidence for ethynol.     

Steric Structure of Bis(5,5-dimethyl-3-thioxo-1-cyclohexenyl) Sulfide

Two-dimensional NMR spectroscopy, dipole moment measurements, and quantum-chemical calculations (basis 6-31G^*) were used to show that in the gas phase and in solutions bis(5,5-dimethyl-3-thioxo-1-cyclohexenyl) sulfide prefers a nonplanar cis-trans conformation.     

Study of the electric dipole moments of the (C2H5)n PX3−n and P{EIVB (CH3)3}3 compounds (X = Cl,Br, I; EIVB = C,Si, Sn; n = 0, 1, 2, 3)

The dipole moments of the (C₂H₅)_nPX_3?n (X = Cl, Br, I; n = 0, 1, 2, 3) and P{E^IVB(CH₃)₃}₃ compounds (E^IVB = C, Si, Sn) have been determined by dielectric measurements in benzene at 25°C by Higasi's method. The results are interpreted in terms of an additive vector model from bond moment calculations and a maximum phosphorus lone pair contribution of 1.75 D as calculated for P(C₂H₅)₃. The high dipole moment of the mixed PA₂B-type compounds in comparison with PA₃ moments is mainly ascribed to a loss of C_3v symmetry, characterized by a quite asymmetric orientation of the phosphorus lone pair with respect to the phosphorus bonding orbitals.     

溴代作用对竹红菌乙素分子性质影响的量子化学研究

用半经验量子化学方法AM1和PM3对竹红菌乙素及其溴代物进行了对比计算,考察了溴代作用对竹红菌乙素分子性质的影响。两种方法所得结果均表明,溴代作用使分子的生成热、前线轨道能级及偶极矩等参数都有所降低,溴代作用也影响了竹红菌乙素分子内氢键的性质,并能使其对光的吸收产生红移。     

Study of molecular interactions in the polar binary mixtures of N-methyl aniline and alcohols,using excess dielectric and thermodynamic parameters

Molecular interactions between the polar systems N-methyl aniline and alcohols (propan-1-ol/propan-2-ol) for various mole fractions at different temperatures are studied by determining the dielectric permittivity using LF impedance analyzer, Microwave bench and Abbe’s refractometer in radio, microwave and optic frequency regions respectively. The dipole moment, excess dipole moment, excess Helmholtz energy, excess permittivity, excess inverse relaxation time and excess thermodynamic values are calculated using experimental results. The optimized geometry, harmonic vibrational wave numbers and dipole moments of pure and equimolar binary mixtures have been calculated theoretically from the ab initio Hartree–Fock (HF) and Density Functional Theory (DFT – B3LYP) methods with 6-31+G¹ and 6-311+G⁷ basis sets using Spartan 08 modelling software. Conformational analysis of the formation of hydrogen bond in the equimolar binary mixture systems of N-methyl aniline and alcohols (propan-1-ol/propan-2-ol) is supported by experimental FT-IR spectra. The calculated wave numbers and dipole moments agree well with the experimental values. Further, the correlations among the parameters are discussed in detail.     

A theoretical study on the structure and properties of phenothiazine derivatives and their radical cations

Semiempirical CNDO, AM1, PM3 and ab initio HF/STO-3G, HF/3-21G(d), and HF/6-31(d) methods were employed in the geometry optimization of the phenothiazine and the corresponding radical cation. The results obtained from the PM3 performances were as good as those from the ab initio calculations in the structure optimization of both phenothiazine and phenothiazine radical cation. The PM3 method was used to optimize the structures of a series of N-substituted phenothiazine derivatives and their radical cations. The PM3-optimized results were then analyzed with the ab initio calculation at the 6-311G(d,p) level, which yielded the total energy, frontier molecular orbitals, dipole moments, and charge and spin density distributions of the phenothiazine derivatives and their radical cations.     

Microwave and vibrational spectra, ab initio calculations, conformational stabilities and assignments of the fundamentals of the Cs conformer of n-butylgermane

The FT-microwave spectrum of n-butylgermane, CH₃CH₂CH₂CH₂GeH₃ has been investigated from 4000 to 18,000 MHz and the microwave spectra have been observed for all of the five naturally occurring germanium isotopologues for the anti-anti (aa) conformer. The dipole moment for the ⁷⁴Ge containing species has been measured, giving a total dipole moment of 0.881 (26) D. In addition, the vibrational spectrum of n-butylgermane is described. Modestly complete assignments are made for the aa conformer. The relative stabilities of the five conformers are calculated, and the anti-anti (aa) conformer is found to be the most stable in all calculations done. This conclusion is confirmed by the infrared and Raman spectrum of the annealed crystal. The dipole moments of all conformers are calculated to be approximately equal and less than 1 D, ranging from approximately 0.8 to 0.9 D.     

Computational Exploration of Conformations of Glycine-Arginine and a Deduced Model on Global Minimum Configurations of Dipeptides in Gas Phase

An extensive computational study on the conformations of gaseous dipeptide glycinearginine, GlyArg, has been performed. A large number of trail structures were generated by systematically sampling the potential energy surface (PES) of GlyArg. The trial structures were successively optimized with the methods of PM3, HF/3-21G^*, BHandHLYP/6-31G^*, and BHandHLYP/6-311++G^** in order to reliably find the low energy conformations. The conformational energies were finally determined with the methods of BHandHLYP, camB3LYP, B97D, and MP2 using the basis set of 6-311++G(3df,3pd). The results establish firmly that gaseous GlyArg exists primarily in its canonical form, in sharp contrast with ArgGly that adopts the zwitterionic form. Important data such as the rotational constants, dipole moments, vertical ionization energies, temperature distributions and IR spectra of the low energy conformers are represented for the understanding of the future experiments. Moreover, considering the global minima of all amino acids and many dipeptides, combined with the hydrophobicities of amino acids, a model predicting whether the global minimum configuration of a dipeptide is canonical or zwitterionic is developed.