Ab initio MO study of potential energy surface of NH2 with CN reaction

An extensive quantum chemical study of the potential energy surfaces (PES) for the association reaction of NH₂ with CN and the subsequent isomerization and dissociation reactions has been carried out using density functional theory (DFT)/B3LYP/6‐311++G(3df,2p) level of theory on both singlet and triplet states. The reaction mechanism on the triplet surface is more complicated than that on the singlet surface. A total of 19 isomers and 46 transition states have been identified and characterized on the triplet PES. Among them, IM2 (IM2a), IM3 (IM3a, IM3b), and IM10 are the lowest‐lying isomers with thermodynamic stability. Twenty available dissociation channels, depending on the different initial isomers, have been identified. On the singlet surface, only 12 isomers and 16 transition states have been found, and among them IM1(S) and IM2(S) are the lowest‐lying isomers. The higher isomerization and dissociation barriers on the singlet surface indicate that the addition and the subsequent reactions of NH₂+CN are most likely to occur on the triplet PES because of the lower barriers. A prediction can be made for the possible mechanism explaining the production of H+HNCN. Besides HNCN, other major products are NH+HCN and NH+HNC, which are produced by direct dissociation reactions from triplet IM2 and IM3, respectively. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

A theoretical study of electronic excited states of photosynthetic reaction center in Rhodopseudomonas viridis

As well known,photosynthesis is the most impor-tant biochemical process on the earth.With a few mi-nor exceptions,photosynthesis is the only mechanism by which an external source of energy is harnessed by the living world.As a crucial composition of photo…     

Local electrostatic field induced by the carotenoid bound to the reaction center of the purple photosynthetic bacterium Rhodobacter sphaeroides

Electroabsorption (EA) spectra were recorded in the region of the reaction center (RC) Qy absorption bands of bacteriochlorophyll (Bchl) and bacteriopheophytin, to investigate the effect of carotenoid (Car) on the electrostatic environment of the RCs of the purple bacterium Rhodobacter (Rb.) sphaeroides. Two different RCs were prepared from Rb. sphaeroides strain R26.1 (R26.1-RC); R26.1 RC lacking Car and a reconstituted RC (R26.1-RC+ Car) prepared by incorporating a synthetic Car (3,4-dihydrospheroidene). Although there were no detectable differences between these two RCs in their near infrared (NIR) absorption spectra at 79 and 293 K, or in their EA spectra at 79 K, significant differences were detected in their EA spectra at 293 K. Three nonlinear optical parameters of each RC were determined in order to evaluate quantitatively these differences; transition dipole-moment polarizability and hyperpolarizability (D factor), the change in polarizability upon photoexcitation (Deltaalpha), and the change in dipole-moment upon photoexcitation (Deltamu). The value of D or Deltaalpha determined for each absorption band of the two RC samples showed similar values at 77 or 293 K. However, the Deltamu values of the special pair Bchls (P) and the monomer Bchls absorption bands showed significant differences between the two RCs at 293 K. X-ray crystallography of the two RCs has revealed that a single molecule of the solubilizing detergent LDAO occupies part of the carotenoid binding site in the absence of a carotenoid. The difference in the value of Deltamu therefore represents the differential effect of the detergent LDAO and the carotenoid on P. The change of electrostatic field around P induced by the presence of Car was determined to be 1.7 x 10(5) [V/cm], corresponding to a approximately 10% change in the electrostatic field around P.     

Ab initio study of the vibrational spectra of the hydrogen-bonded nitric acid dimer.

The changes in the vibrational characteristics characterizing the dimerization of nitric acid have been investigated by ab initio calculations at the MP2 level, with 6-31G(d,p) and 6-31 + G(d,p) basis sets, and B3LYP/6-31G(d,p) calculations. The most consistent agreement between the computed values of the frequency shifts for the planar fully symmetric structure (2A) and those experimentally observed suggests that this structure is preferred. It was established that the most sensitive to the complexation is the stretching O-H vibration. The values of the frequency shift (-306 cm(-1)) is indicative for the formation of the relatively strong hydrogen bonds. The calculations predict an increase of the infrared intensity of the stretching O-H vibration in the nitric acid dimer more than 26 times.     

Ab initio study of low-lying triplet states of the lithium dimer

Observation of Bose-Einstein condensation in Li27 initiated the interest in the scattering length of two ground state lithium atoms when they approach each other as a radical pair triplet aSigmau+3 state. But some properties of this state are still unknown. In present work, a number of low-lying triplet states of lithium molecule are calculated by multi-configuration self-consistent field (MCSCF) and response techniques with account of spin-orbit coupling, spin-spin coupling and some other magnetic perturbations. The singlet-triplet transition probabilities to the ground state are also presented. Most results are connected with the weakly bound lowest triplet a3Sigmau+ state, whose radiative lifetime and spin-splitting are unknown so far in spite of its great importance in Bose-Einstein condensation. Calculations indicate that this state has a very small spin-splitting, lambdass=-0.01 cm-1, which is negligible in comparison with the line-width in experimental Fourier transform spectra published so far. Similar splitting is obtained for the upper state of the 1(3)Sigmag+--a3Sigmau+ transition. This is in agreement with experimental rovibronic analysis of the 1(3)Sigmag+--a3Sigmau+ band system in which the triplet structure was not resolved. The radiative lifetime of the a3Sigmau+ state is predicted to exceed 10 h.     

Ab initio MO study of dipole—dipole interactions in acetonitrile dimers

MO STO-3G ab initio calculations have been carried out for the antiparallel dipole and the head-to-tail dipole model of acetonitrile dimers. The optimized interaction enthalpy is about half of the lowest experimental estimate. The calculated interaction distance for the antiparallel dipole model is very close to the sum of intermolecular radii of N and C; the distance for the head-to-tail model is about 20% higher than the sum of N and H intermolecular radii. The discussion of the interaction in terms of the supermolecule MO's suggests for both models a bonding of mainly electrostatic character. The shortcomings of the STO-3G basis set in dealing with this problem are compared with those reported in the literature. The influence of the basis set on the calculated electron distribution in acetonitrile monomer was examined as a preliminary part of the present study, and is also reported in the paper.     

A theoretical study of electronic excited states of photosynthetic reaction center in Rhodopseudomonas viridis

The electronic singlet vertical excited states of photosynthetic reaction center (PSRC) in Rhodopseudomonas (Rps.) viridis were investigated by ZINDO and INDO/S methods. The effects of the interactions of pigment-pigment and pigment-protein on the electronic excitations were examined. The calculation results showed that the interactions of pigment-pigment and pigment-protein play an important role in reasonably assigning the experimental absorption and circular dichroism (CD) spectra of PSRC in Rps. virids. By comparing the theoretically computed excited states with the experimental absorption and CD spectra, satisfactory assignments of the experimental spectroscopic peaks were achieved.     

用从头算研究Shilov反应的机理

Shilov反应在CH~4活化中占有中心地位,它有氧化加成和σ迁移两种可能的机理。本文用较大基组的从头算研究了这两种机理的反应过程,认为Shilov反应应按氧化加成机理进行。     

Ab initio MO calculation of force constants and dipole derivatives for the formamide dimer. An estimation of hydrogen-bond force constants

Ab initio SCF MO calculations (with the 4-31G basis set) have been carried out to determine the equilibrium geometry, vibrational frequencies, dipole-moment derivatives, and force constants for intermolecular modes of the formamide dimer and its d₄ and d₆ derivatives. The results are correlated with monomer calculations and experimental data for crystalline formamide.     

Ab initio MO study of the solvent effect on the SN2 reaction of the trimethylsulfonium cation with chloride anion

A recently developed ab initio MO theory including solvent effects has been applied to a typical cation-anion reaction, the S_N2 reaction of the trimethylsulfonium cation with the chloride anion. In the gas phase, the trimethylsulfonium and chloride ions are unstabilized, and the reaction is expected to proceed rapidly. In aqueous solution, the reactant ions are largely stabilized, and the reaction has been predicted to be endothermic, with an activation energy of 30–40 kcal/mol. This potential energy profile, which agrees with experimental results, has been well elucidated by differential solvation at several stages of the reaction path. At the transition state of this reaction, the C and H atoms in the transferring CH₃ group are almost in a plane that is perpendicular to the Cl(SINGLE BOND)C(SINGLE BOND)S line, reflecting the concerted nature of the reaction. The population analysis has shown that the electrons in the C(SINGLE BOND)S bond are mostly withdrawn by the sulfur atom at the transition state and that the electron transfer from Cl to CH₃ occurs after the transition state. The calculated activation energy for the reaction in ethanol is smaller than that in water. This agrees with experiments. © 1996 John Wiley & Sons, Inc.     

The intermolecular vibrations of the bifurcated water dimer: An Ab initio study

The intermolecular modes of the bifurcated water dimer are determined at the HF level using an extended basis set. In these computations, the donor libration frequency is found to be real and the bifurcated structure does not collapse toward the linear dimer. This result is contrary to all previous ab initio computations, which have predicted a Hessian with one negative eigenvalue. A good representation of other intermolecular modes, such as the libration of the acceptor, also requires an extended basis set. An interesting infrared active transition is predicted around 444 cm^?1. This transition, which corresponds to the donor wag, is found in the low-temperature spectrum of water in a N₂ matrix.     

Ab initio study on the reaction of uranium with oxygen

The primary reaction products and reaction mechanism of uranium with oxygen were discussed from MP2 method with the relativistic core potential of SDD basis set for U and 6-311+G* for O. The molecular geometries, electronic structure and energies of uranium oxides were obtained. The inspection on the three-dimensional potential energy surfaces of the U–O₂ interaction suggested that the abstraction and insertion mechanism were responsible for the studied reactions. The abstraction reaction channel resulting in the formation of UO and O is favored because the energy barrier is remarkably smaller than the one of the insertion channel resulting in the linear OUO product directly.     

Ab initio study of the reaction path of the reaction HNCO+CN

HNCO is a convenient photolytic source of NCO and NH radicals for laboratory kinetics studies of elementary reaction[1] and plays an important role in the combustion and atmosphere chemistry. It can re- move deleterious compounds rapidly from exhausted ga…     

Interaction energy anisotropy of the pyrrole dimer: ab initio theoretical study

The van der Waals pyrrole dimer is studied using supermolecular and perturbation ab initio treatment with inclusion of correlation energy. The influence of selected geometry variations on the interaction energy components is investigated. Our calculations verified the minimum on the potential energy surface deduced from microwave spectra. Its stability is possibly related not to the extremal values of the selected interaction energy contributions but its physical origin is connected with the delicate equilibrium between the repulsive and attractive forces. Any structure variation connected with the extremal attraction energy is more than compensated for by the repulsion energy. Received: 11 June 1998 / Accepted: 6 October 1998 / Published online: 1 February 1999     

Ab initio SCF MO study of the hydrogen-bonded dimers of cyanogen with HF and HCl

Large-scale gaussian orbital SCF MO calculations are presented for the hydrogen-bonded complexes NCCN…HF and NCCN…HCl. Calculated equilibrium geometries, hydrogen-bond dissociation energies and selected one-electron properties are given to supplement available experimental data. Changes of electron distribution on complex formation are discussed in terms of Mulliken population indices.     

Activation of methane by the iron dimer cation. A theoretical study

A detailed investigation of the reaction mechanisms underlying the observed reactivity of the iron dimer cation with respect to methane has been performed by density functional hybrid (B3LYP) and nonhybrid (BPW91) calculations. Minima and transition states have been fully optimized and characterized along the potential energy surfaces leading to three different exit channels for both the ground and the first excited states of the dimer. A comparison with our previous work covering the reactivity of the Fe(+) monomer was made to underline similarities and differences of the reaction mechanisms. Results show that geometric arrangements corresponding to bridged positions of the ligands with respect to iron atoms are always favored and stabilize intermediates, transition states and products, facilitating their formation. Binding energies of reaction products have been computed and compared with experimental measurements, and ELF analysis of the bond has been performed to rationalize trends as a function of the structure.     

Ab initio molecular dynamics study of the hydrolysis reaction of diborane

The hydrolysis reaction of the diborane molecule in aqueous solution has been studied by a series of Car-Parrinello Molecular Dynamics simulations in the Blue Moon Ensemble. The total reaction has been divided into two parts: one dealing with the breaking of B(2)H(6) molecule and the formation of a BH(4)(-) ion, a H(2)BOH molecule and a H(+) ion; the second leads to the formation of two hydrogen molecules and another H(2)BOH molecule, starting from BH(4)(-), two water molecules and a H(+) ion. The total reaction studied in this work has been B(2)H(6) + 2H(2)O --> 2H(2)BOH + 2H(2). We have described both structurally and electronically the reagents and the products through the radial distribution functions and the Wannier Function Center positions calculations, with attention to the solvent effects on the compounds. The free energy barrier value for the first part of the reaction and a detailed mechanisms for both parts have been reported. An interesting behavior of BH(3) and H(2) molecules in solution has been observed. They form a quite stable three center bond between the electron pair of the hydrogen molecule and the empty orbital of the boron atom in BH(3), which has been described from both a structural and electronic point of view.     

Ab initio program for treatment of related molecules. I. Integral part

Anab initio integral program is described. It utilizes the local symmetries to avoid the redundant computation of integrals over spatially equivalent subsets of the basis. The integrals are grouped in a particular way to facilitate their transfer. The program is very suitable for the treatment of related systems with model geometries. The computing times of different programs are compared and the efficiency of the presented one is demonstrated.