Saturated hydrocarbon-benzene complexes: theoretical study of cooperative CH/pi interactions

High-level ab initio calculations at the CCSD(T)/aug-cc-pVTZ//MP2/aug(d,p)-6-311G(d,p) level were employed to investigate the cooperative CH/pi effects between the pi face of benzene and several modeled saturated hydrocarbons, propane, isobutane, cyclopropane, cyclobutane, cyclopentane, cyclohexane, cyclopentane, cyclooctane, and bicyclo[2.2.2]octane. In all cases, multiple C-H groups (2-4) are found to interact with the pi face of benzene, with one C-H group pointing close to the center of the benzene ring. The geometries of these complexes are governed predominantly by electrostatic interaction between the interacting systems. The calculated interaction energies (10-14 kJ mol(-1)) are 2-3 times larger than that of the prototypical methane-benzene complex. The trends of geometries, interaction energies, binding properties, as well as electron-density topological properties were analyzed. The calculated interaction energies correlate well with the polarizabilities of the hydrocarbons. AIM analysis confirms the hydrogen-bonded nature of the CH/pi interactions. Significant changes in proton chemical shift and stretching frequency (blue shift) are predicted for the ring C-H bond in these complexes.     

Syntheses, structural properties, and charge-transfer complexes of pyrenophanes

Dithia[3.3](4,9)benzenopyrenophanes carrying various functional groups at the inner position or the outer position of the benzene ring have been prepared. The pyrenophanes with the substituent at the inner position of the opposite benzene ring exhibit the conformation in which the pyrene and the benzene components exist in the parallel manner (parallel conformation). On the contrary the conformation characterized by the perpendicular orientation of the pyrene and the benzene components has been confirmed for the pyrenophanes having the substituent at the outer position of the opposite benzene ring (perpendicular conformation). The NH-pi interaction between the inner amino group on the opposite benzene ring and the pyrene ring was observed. Formation of charge-transfer complexes of the pyrenophanes and tetracyanoethylene (TCNE) was performed. It has been found out that the orientation of two aromatic components and the NH-pi interaction as well as the electronic nature of the substituent on the opposite benzene ring significantly affect characteristics of the charge-transfer complexes in this pyrenophane system.     

p-benzoquinone-benzene clusters as potential nanomechanical devices: a theoretical study

The equilibrium structures and binding energies of the benzene complexes of p-benzoquinones (PBQ) and its negatively charged anionic species (PBQ- and PBQ2-) have been investigated theoretically using second-order M?ller-Plesset calculations. While neutral p-benzoquinone-benzene clusters (PBQ-Bz) prefer to have a parallel displaced geometry (P-c), CH...pi interactions (T-shaped geometries) prevail in the di-anionic PBQ-benzene (PBQ2- -Bz) complexes (T-e2-). Studies on dianionic p-benzoquinone-benzene clusters showed that two nonbonded intermolecular interactions compete in the most stable conformation. One is H-bonding interaction (C-H...O type) between carbonyl oxygen of p-benzoquinone and one of the hydrogen atoms of benzene, and the other is a pi-H interaction between pi-electron cloud of PBQ2- and another hydrogen atom of benzene. Blueshifted H-bonds were observed in T-shaped clusters. The changes in the geometrical preference of PBQ-Bz complex upon addition of electrons would be useful in designing optimized molecular mechanical devices based on the edge-to-face and face-to-face aromatic interactions.     

Effect of fluorination: gas-phase structures of N,N-dimethylvinylamine and perfluoro-N,N-dimethylvinylamine.

The gas-phase structures of N,N-dimethylvinylamine, (CH(3))(2)NC(H)=CH(2) (1), and perfluoro-N,N-dimethylvinylamine, (CF(3))(2)NC(F)=CF(2) (2), were determined by gas electron diffraction and quantum chemical methods (B3LYP and MP2 with 6-31G basis sets). The configuration around nitrogen is slightly pyramidal in both compounds, with the sum of the nitrogen bond angles 351.2(12) degrees and 354.8(6) degrees in 1 and 2, respectively. In the parent compound 1, the (CH(3))(2)N group lies nearly in the plane of the vinyl group, and the nitrogen lone pair (lp) is almost perpendicular to this plane (Phi(C=C-N-lp) = 98(6) degrees). In the perfluorinated species 2, however, the (CF(3))(2)N group is oriented perpendicular to the vinyl plane, and the lone pair is parallel to the C=C bond (Phi(C=C-N-lp) = 2(5) degrees). A natural bond orbital analysis provides a qualitative explanation for this conformational change upon fluorination. The sterically unfavorable in-plane orientation of the dimethylamino group in 1 is stabilized by conjugation between the nitrogen lone pair and the C=C pi-bond. The anomeric effect between the lone pair and the C(alpha)-F sigma-bond in addition to steric effects favors the perpendicular orientation of the (CF(3))(2)N group in 2. Both quantum chemical methods reproduce the experimental structures satisfactorily.     

On the lack of ring-current aromaticity of (heteroatom) [N]radialenes and their dianions

Current-density maps, calculated at the ab initio RHF//6-31G**/CTOCD-DZ level, show no significant pi ring current in planar equilateral geometries of neutral and dianionic [N]radialenes, oxocarbons and thiocarbons C(N)Y(N) (q-) (Y=CH(2), O, S; N=4, 5, 6; q=0 (1 a-12 a), 2 (1 b-12 b)). Only the N=3 deltate dianions C(3)Y(3) (2-) (Y=CH(2), O, S (1 b, 5 b and 9 b)) have discernible pi ring current, and then with at most 20-25 % of the strength of the standard benzene current. On the magnetic criterion, lack of current is definitive evidence against aromaticity. Pictorial molecular-orbital analysis within the ipsocentric approach shows this to be an inevitable consequence of the nodal structure of the pi and pi* orbitals of [N]radialene-like systems. On grounds of angular-momentum symmetry, spatial distribution, or both, the HOMO-LUMO excitation does not contribute a significant central diamagnetic ring current.     

Structures and energetics of the cation-pi interactions of Li+, Na+, and K+ with cup-shaped molecules: effect of ring addition to benzene and cavity selectivity

The interactions of alkali metal cations (Li (+), Na (+), and K (+)) with the cup-shaped molecules, tris(bicyclo[2.2.1]hepteno)benzene and tris(7-azabicyclo[2.2.1]hepteno)benzene have been investigated using MP2(FULL)/6-311+G(d,p)//MP2/6-31G(d) level of theory. The geometries and interaction energies obtained for the metal ion complexation with the cup-shaped systems trindene and benzotripyrrole are compared with the results for benzene-metal ion complexes to examine the effect of ring addition to the benzene on structural and binding affinities. The cup-shaped molecules exhibit two faces or cavities (top and bottom). Except for one of the conformers of tris(7-azabicyclo[2.2.1]hepteno)benzene), the metal ions prefer to bind with the top face over bottom face of the cup-shaped molecules. The selectivity of the top face is due to strong interaction of the cation with the pi cloud not only from the central six-membered ring but also from the pi electrons of rim C=C bonds. In contrast, the metal ions under study exhibit preference to bind with the bottom face rather than top face of tris(7-azabicyclo[2.2.1]hepteno)benzene) when the lone pair of electrons of three nitrogen atoms participates in binding with metal ions. This bottom face selectivity could be ascribed to the combined effect of the cation-pi and strong cation-lone pair interactions. As evidenced from the values of pyramidalization angles, the host molecule becomes deeper bowl when the lone pair of electrons of nitrogen atoms participates in binding with cation. Molecular electrostatic potential surfaces nicely explain the cavity selectivity in the cup-shaped systems and the variation of interaction energies for different ligands. Vibrational frequency analysis is useful in characterizing different metal ion complexes and to distinguish top and bottom face complexes of metal ions with the cup-shaped molecules.     

The leap-frog effect of ring currents in benzene

Symmetry arguments show that the ring-current model proposed by Pauling, Lonsdale, and London to explain the enhanced diamagnetism of benzene is flawed by an intrinsic drawback. The minimal basis set of six atomic 2p orbitals taken into account to develop such a model is inherently insufficient to predict a paramagnetic contribution to the perpendicular component of magnetic susceptibility in planar ring systems such as benzene. Analogous considerations can be made for the hypothetical H(6) cyclic molecule. A model allowing for extended basis sets is necessary to rationalize the magnetism of aromatics. According to high-quality coupled Hartree-Fock calculations, the trajectories of the current density vector field induced by a magnetic field perpendicular to the skeletal plane of benzene in the pi electrons are noticeably different from those typical of a Larmor diamagnetic circulation, in that (i) significant deformation of the orbits from circular to hexagonal symmetry occurs, which is responsible for a paramagnetic contribution of pi electrons to the out-of-plane component of susceptibility, and (ii) a sizable component of the pi current density vector parallel to the inducing field is predicted. This causes a waving motion of pi electrons; streamlines are characterized by a "leap-frog effect".     

High-electron-density C6H6 units: stable ten-pi-electron benzene complexes

The first stable benzene molecule with ten pi electrons is predicted. Stability is achieved through barium atoms acting as an electron-donating "matrix" to C6H6 in the inverted sandwich complex [Ba2(C6H6)]. The bis(barium)benzene complex has been computed at the density functional level of theory by using the hybrid functional mPW1PW91. Ab initio calculations were performed by using the coupled-cluster expansion, CCSD(T). Nucleus independent chemical shift (NICS) indices imply distinct aromatic character in the benzene ring of bis(barium)benzene. The D6h-symmetric structure with a 1A(1g) electronic ground state represents a thermochemically stable, aromatic benzene molecule with four excess pi electrons, stabilised by two barium ions. A possible molecular wire, built up from Ba end-capped thorium-benzene "sandwiches", is discussed.     

Studies on the hydrogen bonding of aniline's derivatives by FT-IR

The hydrogen bonding of 23 aniline's derivatives in various solvents and in solid states are studied by Fourier transform infrared spectroscopy. The Infrared absorption of their amino group is greatly influenced by solvents. Compared with those data determined in hexane, the symmetric stretching frequency (nu(s)) and asymmetric stretching frequency (nu(as)) of amino group have an obvious bathochromic shift in benzene, but a relatively smaller shift in CCl4. It is also found that the concentration of these compounds has very little effect on the frequencies, the band shapes and relative absorption intensities of amino group. This indicates that the intermolecular hydrogen bonds are very weak between the aniline's derivatives in the solution. The substituent of methyl (-CH3) has different electronic effects in organic solvents with various polarities. Methyl group behaves as an electron-donating functional group in hexane, however, it shows an electron-withdrawing effect in benzene. When methoxyl (CH3O-) is ortho-substituted, v(as) of amino group increases and nu(s) almost does not change. While methoxyl (CH3O-) is meta-substituted, v(as) of amino group increases, but nu(s) decreases. The groups of chloro- (Cl-) and nitro- (-NO2) cause a hyposochromic shift of the nu(as) and nu(s) of amino group, while substituent of -NH2 makes a bathochromic shift. The solvents influence the relative intensities of nu(as) and nu(s) of amino group more greatly than the substituents do. In solid states, the amino group of aniline's derivatives has more than two absorption bands because of forming the inter- or intra-molecular hydrogen bonds.     

Aromaticity of four-membered-ring 6pi-electron systems: N2S2 and Li2C4H4

N(2)S(2) is a four-membered-ring system with 6pi electrons. While earlier proposals considered N(2)S(2) to be aromatic, recent electronic structure calculations claimed that N(2)S(2) is a singlet diradical. Our careful reexamination does not support this assertion. N(2)S(2) is closed shell and aromatic since it satisfies all three generally accepted criteria for aromaticity: energetic (stability), structural (planarity with equal bond lengths), and magnetic (negative nucleus-independent chemical shift due to the pi electrons). These characteristics as well as the electronic structure of N(2)S(2) are compared with those for an isoelectronic pi system, Li(2)C(4)H(4), motivated by theoretical and recent experimental investigations that confirmed its aromaticity. However, N(2)S(2) and Li(2)C(4)H(4) are both essentially 2pi-electron aromatic systems with a formal N-S (C-C) bond order of 1.25 even though they both have 6pi electrons. This is because four of the six pi electrons occupy the nonbonding pi HOMOs and only two electrons participate effectively in the aromatic stabilization. However, wave function analysis shows relatively large LUMO occupation numbers; this antibonding effect can be said to reduce the aromatic character by approximately 7% and 4% for N(2)S(2) and Li(2)C(4)H(4), respectively.     

Synthesis and spectroscopy of N3P3X5OCH=CH2 (X = Cl, F, OCH3, OCH2CF3, N(CH3)2) and N3P3X4(OCH=CH2)2 (X = Cl, N(CH3)2). Correlations of ultraviolet photoelectron spectroscopy and nuclear magnetic resonance data to electronic and geometrical structure

The syntheses of the vinyloxycyclotriphosphazene derivatives N3P3X5OCH=CH2 (X = OMe, OCH2CF3) and the N3P3(NMe2)4(OCH=CH2)2 isomeric mixture along with improved preparations of N3P3X5OCH=CH2 (X = F, NMe2) are reported. The interactions between the vinyloxy function and the cyclophosphazene in these and the previously reported N3P3Cl5 (OCH=CH2) and N3P3F6-n(OCH=CH2)n (n = 1-4) have been examined by ultraviolet photoelectron spectroscopy (UPS) and NMR spectroscopy. The UPS data for the chloro and fluoro derivatives show a strong electron-withdrawing effect of the phosphazene on the olefin that is mediated with decreasing halogen substitution. The 1H and 13C NMR data for N3P3X5OCH=CH2 (X = F, Cl, OMe, OCH2CF3, NMe2) show significant changes as a function of the phosphazene substituent. There is a linear correlation between the beta-carbon chemical shift on the vinyloxy unit and the phosphorus chemical shift at the vinyloxyphosphorus centers. The chemical shifts of the different phosphorus centers on each ring are also related in a linear fashion. These relationships may be understood in terms of the relative electron donor-acceptor abilities of the substituents on the phosphazene ring. The 1H NMR spectra of the N3P3(NMe2)4(OCH-CH2)2 isomeric mixture allow for assignment of the relative amounts of cis and trans isomers. A model for the observed cis preference in the formation of N3P3Cl4(OCH=CH)2 is presented.     

Aromaticity of organic heterocyclothiazenes and analogues

Members of a series of carbon-poor sulfur-nitrogen heterocycles and polycycles are shown by direct ab initio ipsocentric calculation to support diatropic ring currents and hence to be aromatic on the basis of magnetic criteria. They include 7-cycles S(3)N(2)(CH)(2), S(3)N(3)(CH), and S(3)N(4) and 8-cycles S(2)N(4)(CH)(2) and S(2)N(2)(CH)(4), all with 10 pi electrons. The unknown trithiatetrazepine S(3)N(4) is predicted to be at least as aromatic as its known diaza and triaza homologues. Angular-momentum arguments show that the pi-electron-rich nature of (4n + 2) SN heterocycles is the key to their diatropic current. The Woodward dithiatetrazocine parent framework S(2)N(4)(CH)(2) supports a diatropic ring current, as does its analogue in which N and CH groups are formally exchanged. Formal expansion of (4n + 2)-pi carbocyclic systems by insertion of NSN motifs in every CC bond is predicted to lead to structures that support diatropic ring currents: explicit ab initio calculation of magnetic response predicts the 24-center, 30-pi-electron heterocycle S(6)N(12)(CH)(6), formally derived from benzene, to be aromatic on the basis of this criterion.     

Effects of chromophore orientation and molecule conformation on surface-enhanced Raman scattering studied with alkanoic acids and colloidal silver nanoparticles

Experimental studies have been carried out to gain a better understanding of the effects of chromophore orientation and molecular conformation on surface-enhanced Raman scattering (SERS) based on metal nanostructures. A series of alkanoic acids that contain a phenyl ring separated by methylene groups from the carboxylic acid, including phenylacetic acid, 3-phenylpropionic acid, 4-phenylbutyric acid, 5-phenylvaleric acid, and 6-phenylhexanoic acid, was investigated as model molecules with colloidal silver nanoparticles as SERS substrates. As the number of methylene groups increases, the molecules display an interesting zigzag intensity pattern of the phenyl ring bending mode around 1000 cm(-1) as well as a trend of appearance and disappearance of either the degenerate ring breathing mode or C[Double Bond]O vibrational mode near 1585 and 1630 cm(-1), respectively. Molecules containing an odd number of methylene units display a higher ring bending intensity and degenerate ring breathing mode and are suggested to have a trans conformation on the particle surface. Molecules with an even number of methylene units show a C[Double Bond]O vibrational mode and weaker ring bending in their SERS spectra and are suggested to have a gauche conformation on the silver nanoparticle surface. The different conformation is attributed to the varying interactions of the carboxylic group or the phenyl ring pi electrons with the silver surface. The SERS intensity was found to change little as the length between the phenyl ring and the carboxylic group was increased by adding CH(2) spacers. This is possibly because the effective distance between the phenyl ring and the silver surface does not change much with increasing number of CH(2) spacers as a result of changes in molecular conformation and variations in the phenyl ring orientation with CH(2) addition. The insight gained from this study is important for understanding SERS of complex molecules for which chromophore orientation and molecular conformation must be taken into careful consideration.     

Experimental and theoretical study of substituent effects of iodonitrobenzenes

The electronic structures and substituent effects of o-, m-, and p-iodonitrobenzene have been studied by ultraviolet photoelectron spectroscopy (UPS). The observed bands were interpreted on the basis of empirical arguments and theoretical calculations. The analysis of electronic effects of the donor/acceptor substituent groups is essential for the reliable assignment of the observed photoelectron spectra. The investigation of pi- and n-orbital ionization potentials enabled us to describe the correlation between substituent effects and the relative reactivities of the iodonitrobenzenes. It was found that the energy order of the pi(2) and n(II) parallel orbitals is reversed as a result of the combined influence of the electron-withdrawing nitro group and the electron-donating iodine atom. Distinct changes of the pi and n bands occur in o-iodonitrobenzene. This characteristic depends on the conjugation between the pi orbitals of the benzene ring and the nitro group and the interaction of in-plane lone pairs of iodine and one of the oxygen atoms of the nitro group in the adjacent position. This might contribute to the high reactivity of o-iodonitrobenzene in a number of reactions.     

Lewis acidity/basicity of pi-electron systems: theoretical study of a molecular interaction between a pi system and a Lewis acid/base

Molecular interactions between pi systems having different pi-electron character (benzene, hexafluorobenzene, and borazine), and a Lewis acid/base (borane and ammonia) were theoretically studied. An attractive interaction between benzene, the electron-rich pi system, and borane was observed. On the other hand, repulsive interactions between benzene and ammonia was observed when the lone pair of nitrogen points toward the benzene ring. In contrast, an attractive interaction between hexafluorobenzene, an electron-deficient pi system, and ammonia was observed. Unexpectedly, a weak attractive interaction between hexafluorobenzene and borane was also observed. Borazine shows an interaction both to borane and ammonia. The attraction between the nitrogen atom of borazine and borane was larger than that between the boron atom of borazine and ammonia.     

Evidence for a C-H...pi type weak interaction: 1 : 1 complex of styrene with acetylene studied by mass selective high-resolution UV spectroscopy and ab initio calculations

The 1 : 1 complex of styrene with acetylene has been studied by mass selective low- and high-resolution UV resonance-enhanced two-photon ionisation (R2PI) spectroscopy combined with genetic-algorithm-based computer-aided fit of the spectra with partial rotational resolution, and high level ab initio quantum chemistry calculations. Two stable conformeric geometries of the 1 : 1 complex of styrene and acetylene have been theoretically found: one with acetylene binding to styrene as a proton donor, and one with acetylene acting as a proton acceptor. From the analysis of the vibronic structure of the S1<-- S0 spectrum and the fit of the highly resolved spectrum of the 0 origin band of the complex it is shown that the favoured conformation is the one in which acetylene binds to the benzene ring of styrene through formation of a non-conventional hydrogen bond of C-H...pi type with no marked change of the transition moment orientation of styrene. The styrene moiety remains planar and the acetylene molecule is tilted by a small angle of 4 degrees relative to the C6 symmetry axis of the benzene ring, most likely due to the reduced symmetry of the benzene ring pi electrons rather than to a direct interaction with the vinyl group.     

The role played by the amino and carboxyl groups in the formation of the geometric and electronic structure of phenoxy substituted cyclophosphazenes

A quantum-topological analysis of the electron density calculated by the density functional theory method in the B3LYP/6-31G(d,p) approximation was performed to determine and quantitatively characterize four types of noncovalent interactions in mono-and disubstituted 4-aminophenoxy-and 4-carboxyphenoxycyclotriphosphazenes P₃N₃Cl₅OC₆H₄NH₂, P₃N₃Cl₄(OC₆H₄NH₂)₂, P₃N₃Cl₅OC₆H₄COOH, and P₃N₃Cl₄(OC₆H₄COOH)₂. These are C-H…N hydrogen bonds between a nitrogen atom of the phosphazene ring and a hydrogen atom of the benzene ring, C-H…C interactions between a carbon atom of one phenoxy group and a hydrogen atom of the other such group (C-H…π interactions), N-H…N interactions between nitrogen and hydrogen atoms of neighboring amino groups, and C-O…C interactions between oxygen atoms of neighboring carboxyl groups. This system of noncovalent bonding interactions determines the mutual orientation of oxyphenyl fragments. The total energy of interatomic contacts estimated from the local potential energy of electrons at the corresponding critical bond points is larger for the amino than for the carboxyl group. It follows that the amino group has the strongest effect on the mutual orientation of oxyphenyl fragments. The effect of the carboxyl group is weaker.     

13C, 14N, 15N and 17O NMR spectra of the charged species of nitropyrroles and nitroimidazoles

Changes in ¹³C and ¹⁴N chemical shifts of the nitro derivatives of nitrogen heterocycles upon ionization (anion or cation formation) are twofold—first a uniform paramagnetic or in the case of protonation, a uniform diamagnetic shift of all the ring resonances that parallels the changes in the respective ultraviolet spectra and must be caused by changes in the molecular excited states, and second—the influence of the conjugated nitro group. About one third of the total negative anion charge may be localized on the nitro group, which causes unusually large shifts of the ring ¹³C resonances in this case.     

Synthesis, characterization, and properties of subporphyrazines: a new class of nonplanar, aromatic macrocycles with absorption in the green region

Novel subphthalocyanine analogues that display strong absorption in the green region have been synthesized by using a boron template cyclotrimerization of maleonitrile derivatives. The spectroscopic properties of these macrocycles indicate that, like subphthalocyanines, they have 14 pi electrons and are aromatic compounds with a conical shape. The removal of the three fused benzene rings from the subphthalocyanine skeleton produces a 75-80 nm blue shift of the Q-band and a slight lowering of the absorption coefficients for this band. In addition, the reduction of the pi system from 18 to 14 electrons that accompanies progression from porphyrazines to subporphyrazines causes a hypsochromic shift of the Q-band of around 100 nm. Subporphyrazines that are peripherally functionalized with six thioether chains, and in which the sulfur atoms are attached directly to the pyrrole moieties, exhibit optical features that may be explained in terms of the extension of pi conjugation over the six thiolene groups, as well as strong pi donation from the sulfur lone pairs to the macrocycle. These two effects are quantitatively and qualitatively very similar to those observed for porphyrazines that possess the same type of substitution. In addition, the mesomorphic behavior at low temperatures of a macrocycle that is substituted with six thiododecyl chains was demonstrated by using differential scanning calorimetry and optical polarising microscopy.