Stable transition metal complexes of an all-metal antiaromatic molecule (Al4Li4): role of complexations

We propose for the first time a few examples of stable transition metal complexes of an all-metal antiaromatic molecule Al4Li4. We demonstrate that these all-metal species can be stabilized by complexation with 3d transition metals very similar to their organic counterpart, C4H4. Complexation to transition metal ions reduces the frontier orbital energies and introduces aromatic charactersitics. We consider a series of such complexes: [eta4-(Al4Li4)-Fe(CO)3, eta2,sigma2-(Al4Li4)-Ni, and (Al4Li4)2Ni] and compare and contrast their energetics with their organometallic counterparts. Fragmentation energy, orbital correlation energy analysis, and the nucleus-independent chemical shift (NICS) values support the complexation-induced stabilities in these systems.     

Structures and energetics of hydrated oxygen anion clusters

Hydration of the atomic oxygen radical anion is studied with computational electronic structure methods, considering (O(-))(H(2)O)(n) clusters and related proton-transferred (OH(-))(OH)(H(2)O)(n)(-)(1) clusters having n = 1-5. A total of 67 distinct local-minimum structures having various interesting hydrogen bonding motifs are obtained and analyzed. On the basis of the most stable form of each type, (O(-))(H(2)O)(n)) clusters are energetically favored, although for n > or = 3, there is considerable overlap in energy between other members of the (O(-))(H(2)O)(n) family and various members of the (OH(-))(OH)(H(2)O)(n)(-)(1) family. In the lower-energy (O(-))(H(2)O)(n) clusters, the hydrogen bonding arrangement about the oxygen anion center tends to be planar, leaving the oxygen anion p-like orbital containing the unpaired electron uninvolved in hydrogen bonding with any water molecule. In (OH(-))(OH)(H(2)O)(n)(-)(1) clusters, on the other hand, nonplanar arrangements are the rule about the anionic oxygen center that accepts hydrogen bonds. No instances are found of OH(-) acting as a hydrogen bond donor. Those OH bonds that form hydrogen bonds to an anionic O(-) or OH(-) center are significantly stretched from their equilibrium value in isolated water or hydroxyl. A quantitative inverse correlation is established for all hydrogen bonds between the amount of the OH bond stretch and the distance to the other oxygen involved in the hydrogen bond.     

Stabilization of an all-metal antiaromatic molecule (Al4Li4) using BH and C as caps

It has been reported by Pati et al. ( J. Am. Chem. Soc. 2005, 127, 3496) that coordination with a transition metal can stabilize the "antiaromatic", all-metal compound Al4Li4. Here, we report that it can also be stabilized by capping with a main group element like C and its isoelectronic species BH. Our calculations of binding energy, nuclear independent chemical shift, energy decomposition analysis, and molecular orbital analysis support the capping-induced stability, reduction of bond length alternation, and increase of aromaticity of these BH/C-capped Al4Li4 systems. The interaction between px and py orbitals of BH/C and the HOMO and LUMO of Al4Li4 is responsible for the stabilization. Our calculations suggest that capping can introduce fluxionality at room temperature.     

Hydrogen atom and hydride anion addition to adenine: structures and energetics.

The radicals and anions derived from the 9H tautomer of adenine by adding a hydrogen atom to one of the four double bonds of the adenine framework have been studied. Computations were carried out using a carefully calibrated density functional (B3LYP) method and basis set (DZP++). Optimized geometries, energies, and vibrational frequencies are predicted for eight radicals and anions. The radicals are found to lie in a range of 22 kcal mol(-1), with the radical derived by addition to the C(8) carbon atom being the lowest lying energetically. The anions are predicted to be bound species in the gas phase with an energetic range of 43 kcal mol(-1). Anions produced by addition of a hydride ion to adenine carbon atoms are found to be the most favorable. Six of the anions are predicted to be stable species with respect to electron detachment. The adiabatic electron affinities, vertical electron affinities, and vertical detachment energies are computed for the first time. Electron affinities for these radicals range from 0.0 to 2.0 eV. Radicals produced by addition to a nitrogen atom have near-zero adiabatic electron affinities, while radicals produced by addition at carbon atoms have considerably higher electron affinities.     

Pi-dimer formation in an oligothiophene tweezer molecule

An oligothiophene tweezer molecule, which has two quaterthiophene moieties connected to create an electrochemically activated hinge, has been synthesized. Two-electron oxidation of the tweezer molecule produces an intramolecular pi-dimer between the two oligothiophene moieties at room temperature as confirmed by UV-vis absorption, electrochemistry, and EPR experiments.     

Structures, energetics, and spectra of hydrated hydroxide anion clusters

The structures, energetics, electronic properties, and spectra of hydrated hydroxide anions are studied using density functional and high level ab initio calculations. The overall structures and binding energies are similar to the hydrated anion clusters, in particular, to the hydrated fluoride anion clusters except for the tetrahydrated clusters and hexahydrated clusters. In tetrahydrated system, tricoordinated structures and tetracoordinated structures are compatible, while in pentahydrated systems and hexahydrated systems, tetracoordinated structures are stable. The hexahydrated system is similar in structure to the hydrated chloride cluster. The thermodynamic quantities (enthalpies and free energies) of the clusters are in good agreement with the experimental values. The electronic properties induced by hydration are similar to hydrated chloride anions. The charge-transfer-to-solvent energies of these hydrated-hydroxide anions are discussed, and the predicted ir spectra are used to explain the experimental data in terms of the cluster structures. The low-energy barriers between the conformations along potential energy surfaces are reported.     

Understanding organic gas-phase anion molecule reactions

Although ionic reactions in the gas phase seem on the surface to be totally different from those in solution (e.g., they typically occur about 10(12) times more rapidly than their solution analogues and go about as fast at 10 K as they do at room temperature), they can, in fact, exhibit subtle steric, electronic, and isotopic effects. In this Perspective, we show how these differences arise, explain why gas-phase ion reactions can be both fast and selective, and discuss when they can and cannot be classified as "hot" reactions. We also give examples of the use of these reactions to devise new synthetic pathways, investigate reaction mechanisms, and generate important thermochemical data such as bond dissociation energies.     

Tris(indolyl)methene molecule as an anion receptor and colorimetric chemosensor: tunable selectivity and sensitivity for anions

Simple tris(indolyl)methene receptors 1-3 containing conjugated bisindole skeletons have been designed and synthesized. The anion binding and sensing properties have been studied using UV-vis spectroscopy and (1)H NMR titration technique. Compared with 3,3'-bis-indolyl phenylmethene (4), tris(indolyl)methene receptors could highly selectively detect F(-) based on two stages of proton transfer, along with stepwise drastic color changes. The introduction of the electron withdrawing or donating groups into indole unit, which tunes the acidities of the hydrogen bond sites, partially enhanced or inhibited the occurrence of the deprotonation of receptor and has a positive effect on the selectivity and sensitivity of such "proton-transfer" chemosensors for anions.     

Assembly of an allenylidene ligand, a terminal alkyne, and an acetonitrile molecule: formation of osmacyclopentapyrrole derivatives

Treatment in acetonitrile at -30 C of the hydride-alkenylcarbyne complex [OsH([triple bond]CCH=CPh2)(CH3CN)2(P(i)Pr3)2][BF4]2 (1) with (t)BuOK produces the selective deprotonation of the alkenyl substituent of the carbyne and the formation of the bis-solvento hydride-allenylidene derivative [OsH(=C=C=CPh2)(CH3CN)2(P(i)Pr3)2]BF4 (2), which under carbon monoxide atmosphere is converted into [Os(CH=C=CPh2)(CO)(CH3CN)2(P(i)Pr3)2]BF4 (3). When the treatment of 1 with (t)BuOK is carried out in dichloromethane at room temperature, the fluoro-alkenylcarbyne [OsHF([triple bond]CCH=CPh2)(CH3CN)(P(i)Pr3)2]BF4 (4) is isolated. Complex 2 reacts with terminal alkynes. The reactions with phenylacetylene and cyclohexylacetylene afford [Os[(E)-CH=CHR](=C=C=CPh2)(CH3CN)2(P(i)Pr3)2]BF4 (R = Ph (5), Cy (6)), containing an alkenyl ligand beside the allenylidene, while the reaction with acetylene in dichloromethane at -20 degrees C gives the hydride-allenylidene-pi-alkyne [OsH(=C=C=CPh2)(eta2-HC[triple bond]CH)(P(i)Pr3)2]BF4 (7), with the alkyne acting as a four-electron donor ligand. In acetonitrile under reflux, complexes 5 and 6 are transformed into the osmacyclopentapyrrole compounds [Os[C=C(CPh2CR=CH)CMe=NH](CH3CN)2]BF4 (R = Ph (8), Cy (9)), as a result of the assembly of the allenylidene ligand, the alkenyl group, and an acetonitrile molecule. The X-ray structures of 2, 5, and 8 are also reported.     

Remarks on the concept of an atom in a molecule and on charge transfer between atoms on molecule formation

Density functional theory provides a natural and rigorous definition of an atom in a molecule in its ground state: The molecular electron density is the sum of atomic densities, the atoms have the same chemical potential as does the molecule, and the atoms are minimally promoted from their ground states. These atoms in general are not spherical, and in general they bear nonintegral charges. Charge transfer on molecule formation is thereby uniquely defined. Calculations by Palke and by Guse are reviewed, in which the hydrogen atom is identified in the hydrogen molecule.     

Ab initio molecular-orbital study of structures and energetics of Si3H3 neutral and anion

The geometric structures and isomeric stabilities of various stationary points in Si(3)H(3) neutral and its anion are investigated at the coupled-cluster singles, doubles (triples) [CCSD(T)] level of theory. For geometrical surveys, the basis sets used are of the Dunning's correlation consistent basis sets of triple-zeta quality for the neutral. To the anions, the Dunning's correlation consistent basis sets of double-zeta quality with diffuse functions are applied. For the three lower-lying anion isomers, the Dunning's correlation consistent basis sets of triple-zeta quality with diffuse functions (aug-cc-pVTZ) are also used. The final energies for the optimized stationary points are calculated at the CCSD(T) level of theory with the aug-cc-pVTZ basis sets. The basis sets of 6-311++G(3df,2pd) were also used for the lower-lying anion isomers. The Gaussian-2 method was performed only for the lower-lying anion isomers to clarify the relative stabilities. The global minimum neutral 1 (C(1):(2)A) has an unsymmetrical hydrogen-bridged bond; the conformer 2 in C(s) symmetry is a saddle point connecting the two equivalent isomers 1. Two lower-lying isomers (3 and 4) are also predicted within the energy range of 20 kJmol. In the anion, however, the conformer 4 (C(s):(1)A(')) with five formal valence electrons is a global minimum. Two more isomers (2 and 3) lie within 20 kJmol as in the neutral; the conformer 1 converts to the isomer 2. The quartets for the neutrals and diradical triplets for the anions were further studied; lower-lying quartets and triplets, competing with the corresponding doublet and singlet, respectively, were not found in the present systems. The vertical and adiabatic electron affinities of the global minimum neutral 1, producing the second lowest-lying anion isomer 2, amount to 2.18 and 2.35 eV, respectively, at the CCSD(T)/aug-cc-pVTZ level of theory. The electron addition to the third lowest-lying neutral isomer 4 produces the largest vertical electron affinities of 2.48 eV. The D(3h) structure, being the global minimum in the corresponding Si(3)H(3) (+) cation (trisilacyclopropenyl cation), converts to the isomer 8 (C(s)) or 11 (C(2)) due to the Jahn-Teller effect in the Si(3)H(3) neutral.     

A thiadiazole-fused N,N-dihydroquinoxaline: antiaromatic but isolable

An antiaromatic-aromatic pair of peralkynylated heterocycles readily interconvert via redox reactions. [reaction: see text]     

Electronic structures of antiaromatic molecules

The electronic structures of the planar cyclic polymethines with 4n electrons (the so-called antiaromatic molecules) are investigated by the unrestricted Hartree-Fock approximation. The relative stability and spin structures of singlet and triplet states of the above species are discussed.     

Surprises in the energetics of host-guest anion binding to calix[4]pyrrole

Contrary to common expectation, calorimetric measurements do not corroborate the preference of calix[4]pyrrole for fluoride over chloride in acetonitrile solution.     

Comparison of enzymatic and non-enzymatic nitroethane anion formation: thermodynamics and contribution of tunneling

In the reaction of nitroalkane oxidase (NAO), the oxidation of nitroalkanes to the corresponding aldehydes or ketones is initiated by the deprotonation of the neutral nitroalkane. The energetics of nitroethane ionization for both the enzymatic and non-enzymatic reactions have been determined by measuring rate constants as a function of temperature. At 25 degrees C, the rate constant for the acetate-catalyzed reaction is a billionfold smaller than the kcat/Km value for NAO. This corresponds to a difference of 12.3 kcal/mol in the free energy of activation that is largely due to a difference in the activation enthalpy. Analysis of the temperature dependence of the deuterium kinetic isotope effects on the reactions yields similar DeltaEa and AH/AD values for the acetate, phosphate, and NAO-catalyzed reactions that fall within the semiclassical limits, consistent with similar contributions of tunneling to the enzymatic and non-enzymatic reactions.     

Pulse radiolysis studies of 4-pyridinol: Evidence for dimer anion formation

Rate constants for the reactions of 4-pyridinol with e^-_aq and OH/O^- species were determined at different pHs. The spectral and kinetic characteristics of product transient species formed have been assessed. It has been found that semireduced 4-pyridinol forms dimer anions on reaction with the parent molecule. Equilibrium constant for the dimer formation has been determined to be 97 dm³ mol^-1. Reactions of 4-pyridinol with radiolytic species have been compared with those of 2- and 3-pyridinols investigated and reported earlier.     

H-bonding cooperativity and energetics of alpha-helix formation of five 17-amino acid peptides

Five peptides, each containing 17 amino acids, have been completely geometrically optimized in their alpha-helical and beta-strand forms using a mixed DFT/AM1 procedure. B3LYP/D95** was used for the entire helical structures, while AM1 was initially used to optimize the side chains, followed by reoptimization at the DFT level. The energetic and structural results show (1) that the helices are favored over the strands by 29.5 to 37.4 kcal/mol; (2) that alkyl groups on the amino acid side chains favor helix formation even in the absence of solvent; (3) that C-H...O hydrogen bonds contribute to the relative stability of the helices that contain amino acids (val, leu and ile) with beta-hydrogens in their alkyl side chains; (4) that formation of these helices entails approximately 6.6 kcal/mol of strain within the backbone per hydrogen bond; and (5) that H-bond cooperativity is essential for the alpha-helix to become more stable than a corresponding beta-strand. This last observation strongly suggests that pairwise potentials are inadequate for modeling of peptides and proteins.