Probing the dependence of long-range, four-atom interactions on intermolecular orientation. 1. Molecular hydrogen and iodine monochloride

The dependence of the long-range interactions between molecular hydrogen and iodine monochloride on the geometry between the molecules is investigated. Laser-induced fluorescence and action spectroscopy experiments have identified multiple conformers of the o,p-H2...I35,37Cl(X,v' '=0) van der Waals complexes. A conformer with the hydrogen molecule localized at the iodine end of the dihalogen, most likely with C2v symmetry, is significantly more stable than an asymmetric conformer with the hydrogen localized in the well oriented orthogonally to the I-Cl bond axis, D0' ' = 186.4(3) cm-1 versus 82.8(3) 相似文献   

The dissociation dynamics of He...I 35Cl(B,v'=2,3) complexes with varying amounts of internal energy

The He...I (35)Cl intermolecular vibrational levels with n'=0-6 that are bound within the He+ICl(B,v'=3) potential [A. B. McCoy, J. P. Darr, D. S. Boucher, P. R. Winter, M. D. Bradke, and R. A. Loomis, J. Chem. Phys. 120, 2677 (2004)] are identified in laser-induced fluorescence experiments performed at very low temperatures within a supersonic expansion. Comparisons of the positions and intensities of these lines with the excitation spectra, calculated using potential surfaces to describe the interactions between the helium atom and ICl in its ground and excited state, assist in the assignments. Based on these comparisons the excited state potential was rescaled so that the experimental and calculated J'=0 energies agree to within the experimental uncertainties for all but the lowest, n'=0, intermolecular level. Two-laser, action, and pump-probe spectroscopy experiments indicate that the bound He...I (35)Cl(B,v'=3) intermolecular vibrational levels undergo vibrational predissociation forming rotationally excited I (35)Cl(B,v'=2,j') products with distributions that depend upon the initial intermolecular vibrational level excited. Action spectra recorded in the ICl B-X, 2-0 region while monitoring the Deltav=0, I (35)Cl(B,v'=2) channel reveal two additional dissociation mechanisms for the He...I (35)Cl(B,v') excited state complexes: rotational predissociation of discrete metastable states lying slightly above the He+I (35)Cl(B,v'=2) asymptote and direct dissociation that occurs when the linear conformer is excited to the continuum of states above the same asymptote. The rotational predissociation pathway forms I (35)Cl(B,v'=2,j') products in all of the rotational states energetically accessible. The direct dissociation mechanism yields very cold rotational product state distributions; for instance, the average rotational energy in the product state distribution measured when the linear complexes are prepared 20 cm(-1) above the dissociation limit is only 1.51 cm(-1), representing only 7.6% of the available energy.     

Vibrational relaxation dynamics of I35Cl(B, v') induced by low-temperature collisions with He atoms

Using laser-induced fluorescence and two-laser, pump-probe spectroscopy, collision-induced vibrational relaxation is observed to compete with the dissociation of electronically excited ICl in a helium carrier gas expansion. By thoroughly characterizing the expansion properties, we observe that collisions of ICl(B, v'= 3) molecules with He atoms in the expansion induce vibrational relaxation of the initially prepared dihalogen down to rotor states in the next lower ICl(B,v'= 2) level on timescales that compete with the rate for non-adiabatic transfer from the B state to the Z1 state. The resulting ICl(B,v'= 2,j') product rotational distribution, along with the analogous ICl(B,v'= 1,j') distribution formed by collisional relaxation of molecules in the long-lived ICl(B,v'= 2) level are compared to ICl(B,v'= 2,j') products formed by vibrational predissociation of He...ICl complexes prepared in different intermolecular vibrational levels within the He + ICl(B,v'= 3) potential. No evidence is observed for resonance-enhanced collisional cross sections, even at the low temperatures achieved, T < 1.0 K.     

On the role of scattering resonances in the F+HD reaction dynamics

We study scattering resonances in the F+HD-->HF+D reaction using a new method for direct evaluation of the lifetime Q-matrix [Aquilanti et al., J. Chem. Phys. 2005, 123, 054314]. We show that most of the resonances are due to van der Waals states in the entrance and exit reaction channels. The metastable states observed in the product reaction channel are assigned by calculating the energy levels and wave functions of the HF...D van der Waals complex. The behavior of resonance energies, widths, and decay branching ratios as functions of total angular momentum is analyzed. The effect of isotopic substitution on resonance energies and lifetimes is elucidated by comparison with previous results for the F+H2 reaction. It is demonstrated that HF(v'=3) products near threshold are formed by decay of the narrow resonances supported by van der Waals wells in the exit channel. State-to-state differential cross sections in the HF(v'=3) channel exhibit characteristic forward-backward peaks due to the formation of a long-lived metastable complex. The role of the exit-channel resonances in the interpretation of molecular beam experiments is discussed.     

Combined experimental/theoretical investigation of the He+ICl interactions. I. Rovibronic spectrum of He...ICl complexes in the ICl B-X, 3-0 region

Transitions of two different stereoisomers of the He...ICl(X,v" = 0) weakly bound complex, one with a T-shaped orientation and another that is most likely linear, have been observed in laser-induced fluorescence experiments performed in the ICl B-X region. Here we present experimental and theoretical results aimed at confirming the previous assignments and at gaining additional insights into the He+ICl interactions. High resolution action spectra were recorded in the same region to identify those features that could be attributed to transitions of the He...I35Cl(X,v" = 0) isomers and not to higher-order complexes, Hen...I35Cl, where n > or = 2, or I37Cl containing species. Calculations of the rovibronic spectra of the He...I35Cl complexes in the ICl B-X, 2-0 and 3-0 regions were performed using an ab initio potential energy surface for the He+ICl(X,v" = 0) ground state and two different pairwise additive potentials for the He+ICl(B,v' = 2,3) excited states. The rotation-vibration energies and wave functions for the He cdots, three dots, centered I35Cl complexes were obtained for all bound states with total angular momentum J < 10 using both of these potentials. Electronic spectra were generated using these results, assuming that the transition moment lies along the ICl bond and is not perturbed by the presence of the helium atom. The calculations qualitatively reproduce the He cdots, three dots, centered I35Cl action spectrum and strongly support the previous assignments. The calculations also indicate that some of the spectral congestion observed near the linear band may be attributed to transitions of the linear isomer to multiple intermolecular levels in the excited state. Coriolis coupling strongly mixes He cdots, three dots, centered ICl(B,v') states with rotational excitation, making simulations and assignments of the linear band observed in the experimental spectrum difficult.     

Reaction of Ba with ICl and IBr

The chemiluminescence from the reactions of Ba with ICl and IBr have been studied. Emission could be observed only from BaCl and BaBr. A broad emission in the near-IR could not be unambiguously assigned. The formation of IX-Ar (X = Cl, Br) van der Waals complexes quenched the chemiluminescence channel.     

Structural and electronic effects on one-bond spin-spin coupling constants 1J(B-N), 1J(B-H), and 1J(B-F) for complexes of nitrogen bases with BH3 and its fluoro-substituted derivatives

Ab initio equation-of-motion coupled cluster (EOM-CCSD) one-bond spin-spin coupling constants (1)J(B-N), (1)J(B-H), and (1)J(B-F) have been evaluated for complexes X:BH(n)F(3-n) with X = N(2), NCH, NCLi, H(2)CNH, NF(3), and NH(3), for n = 0-3. These complexes can be classified as either covalent or van der Waals complexes, on the basis of their binding energies and B-N distances. (1)J(B-N) for covalent complexes varies significantly from -19 to +9 Hz, whereas (1)J(B-N) is less than 2 Hz for van der Waals complexes. An absolute value of (1)J(B-N) of 3 Hz or greater indicates that the complex is covalently bonded, but a small value of this coupling constant does not necessarily mean that it is a van der Waals complex, in view of the variation among these complexes found for (1)J(B-N) as a function of the B-N distance. Deformation of the boron acid upon complex formation and electron donation by the nitrogen base has opposing effects on both (1)J(B-H) and (1)J(B-F). These effects are relatively small in van der Waals complexes. In covalent complexes, electron donation has the dominant effect on (1)J(B-H), and on (1)J(B-F) in complexes with BH(2)F and BHF(2), but acid deformation has the dominant effect on (1)J(B-F) in complexes with BF(3). Values of both (1)J(B-H) and (1)J(B-F) reflect the van der Waals or covalent nature of the B-N bond.     

Probing the dependence of long-range, four-atom interactions on intermolecular orientation: 3. Hydrogen and iodine

Two-laser, action spectroscopy experiments have been performed in the I(2)B-X, υ'-0 spectral region on H(2)···I(2) and D(2)···I(2) complexes to investigate the dependence of the H(2)/D(2) + I(2) intermolecular interactions on orientation. The spectra contain features associated with at least two different conformers of the ground-state H(2)/D(2)···I(2)(X,υ' = 0) complexes; one conformer has a preferred T-shaped geometry with the H(2)/D(2) moiety localized in a potential minimum that is orthogonal to the I-I bond axis, and the second conformer has a linear geometry with the H(2)/D(2) moiety positioned in minima at either end of the I(2) molecule, along the bond axis. Those features associated with complexes containing para-H(2)(j = 0), ortho-H(2)(j = 1), ortho-D(2)(j = 0), and para-D(2)(j = 1) are also assigned. The linear conformers are found to be more strongly bound than the T-shaped conformers with binding energies of 118.9(1.9) cm(-1) versus 91.3-93.3 cm(-1) for the ortho-H(2)···I(2) complexes and 144.2(2.1) cm(-1) versus 107.9 cm(-1) for the para-D(2)···I(2) complexes, respectively. Electronic structure calculations of the complexes containing ICl and I(2) with H(2), He, Ne, and Ar were performed to reveal the nature of the interactions and to shed insight into the origins of the different binding energies. The most stable minima in the H(2)/D(2) + I(2)(B,υ') excited-state potentials have T-shaped geometries. Calculated energies and probability amplitudes of the excited-state levels provide insight into the different excited-state intermolecular vibrational levels accessed by transitions of the two ground-state conformers.     

The role of orbiting resonances in the vibrational relaxation of I(2)(B,v' = 21) by collisions with He at very low energies: a theoretical and experimental study

The low-energy collisions of I(2)(B,v' = 21) with He involving collision-induced vibrational relaxation of I(2) are investigated both experimentally and by means of wave packet simulations. The theoretical cross sections exhibit a structure of peaks originated by orbiting resonances of the I(2)(B,v' = 21) - He van der Waals complex formed in the I(2) + He collisions. Such a structure has similar characteristics as the structure of peaks found in the experimental cross sections. In fact, four of the five peaks of the measured cross sections appear at positions nearly coincident with those of four of the peaks found in the theoretical cross sections. Thus this result confirms the experimental finding that enhancement of I(2) vibrational relaxation is caused by the population of I(2)(B,v' = 21) - He orbiting resonances populated upon the low-energy collisions. The possibility of using this mechanism in the vibrational cooling of diatomic molecules is discussed.     

A full-dimensional quantum dynamical approach to the vibrational predissociation of Cl2-He2

A full-dimensional, fully coupled wave packet method is proposed and applied to investigate the vibrational predissociation dynamics of the Cl2(B,v')-He2 complex. Simulations are carried out for the resonance states associated with the v'=10-13 initial vibrational excitations of Cl2, and the results are compared with the available experimental data. A good agreement with experiment is achieved for the resonance lifetimes (typically within experimental error) and the Cl(2) fragment rotational distributions. The mechanism of dissociation of the two He atoms is found to be dominantly sequential, through the Deltav'= -2 channel. The probabilities obtained for the Deltav'= -1 dissociation channel are, however, overestimated due to the use of absorbing boundary conditions combined with finite grid effects. It is suggested that a mechanism of energy redistribution through the couplings between the van der Waals modes of the two weak bonds takes place in the Deltav'= -1 dissociation. This mechanism is consistent with the resonance lifetimes and Cl2 rotational distributions predicted. The favorable comparison with most of the experimental data supports the reliability of the potential used to model Cl2(B,v')-He2, at least in the present range of v' levels.     

Electronic structure and absorption spectra of supramolecular complexes of a fullerene crown ether with a π-extended TTF derivative

The present work is a theoretical investigation on supramolecular complexes of a fullerene crown ether (A and B isomers) with a derivative of π-extended tetrathiafulvalene (T). The geometry and the electronic structure of seven different conformers of the complex of dibenzo-18-crown-6 ether of fullero-N-methylpyrrolidine with a N-benzyl-N-(4-{[9,10-bis(1,3-dithiol-2-ylidene)-9,10-dihydroanthracen-2-yl]ethynyl}benzyl)ammonium cation were determined. We calculated the complexation energies and the absorption spectra, i.e., the lowest 50 excited electronic states of the complexes have been determined at the ground state optimum geometry. All calculations were carried out employing the density functional theory (DFT) and the time-dependent DFT, using the B3LYP, CAM-B3LYP, ωB97X-D, and M06-2X functionals in conjunction with the 6-31G(d,p) basis set. Various types of van der Waals interactions are observed in the complexes. Conformer complexation energies (CE) range from 2.54 to 2.14 eV in the gas phase and from 1.75 to 1.34 eV in CHCl(3) solvent at the ωB97X-D/6-31G(d,p)//M06-2X/6-31G(d,p) level of theory. There are three major features at about 390, 330, and 290 nm in the calculated absorption spectra of all the conformers. The major peaks correspond to T→T, T→T/F (electron density in both T and the fullerene F of B) and to T→F transitions, depending on the particular conformer. Other charge transfer T→F transitions are observed close to the T→T transition, indicating the possibility of photoinduced electron transfer in all these complexes.     

Spectral-Luminescent properties of the dioxytetramethylene-bridged naphthol-styrylquinoline dyad

The spectral-luminescent properties of the naphthol-styrylquinoline dyad 2-(E)-{4-[4-(3-hydroxynaphthalen-2-yloxybutoxy]styryl}quinoline (SQ4Np) have been investigated. Fluorescence quenching of the naphthol (Np) moiety via energy transfer to the styrylquinoline (SQ) moiety has been observed upon dyad excitation. A comparison of stationary and time-resolved fluorescent spectroscopy data has revealed two groups of conformers, for which the energy-transfer rate constants differ by more than two orders of magnitude. According to quantum-chemical calculations (B3LYP/6-31G* method), the s-cis-conformation of the SQ fragment is the most stable SQ4Np conformer with the all-trans-conformation of the dioxytetramethylene bridge and intramolecular hydrogen bond in the Np moiety; the van der Waals size of this conformer is 2.90 nm, which is less than the calculated Forster radius of R ₀ = 3.8 nm.     

Two-dimensional infrared investigation of N-acetyl tryptophan methyl amide in solution

The linear infrared and two-dimensional infrared (2D IR) spectra in the amide-I region of N-acetyl tryptophan methyl amide (NATMA) in solvents of varying polarity are reported. The two amide-I transitions have been assigned unambiguously by using 13C isotopic substitution of the carbonyl group. The amide unit at the amino end shows a lower transition frequency in CH2Cl2 and methanol, while the acetyl end has a lower transition frequency in D2O. Multiple conformers exist in CH2Cl2 and methanol, but only one conformer is evident in D2O. The 2D IR cross peaks from the intermode coupling yield off-diagonal anharmonicities 2.5 +/- 0.5, 3.25 +/- 0.5, and 3.0 +/- 0.5 cm(-1) in CH2Cl2, methanol, and D2O, respectively, which by simple matrix diagonalization yield the coupling constants 8.0 +/- 0.5, 8.0 +/- 1.0, and 5.5 +/- 1.0 cm(-1). The major conformer in CH2Cl2 corresponds to a C7 structure, in agreement with that found in the gas phase [Dian, B. C.; Longarte, A.; Mercier, S.; Evans, D. A.; Wales, D. J.; Zwier, T. S. J. Chem. Phys. 2002, 117, 10688-10702] with intramolecular hydrogen bonding between the acetyl end C=O and the amino end N-H. The backbone dihedral angles (phi, psi) are determined to be in the ranges of (-55 +/- 5 degrees , 30 +/- 5 degrees ), (120 +/- 10 degrees , -20 +/- 10 degrees ), and (+/-160 +/- 10 degrees , +/-75 +/- 10 degrees ) in CH2Cl2, methanol, and D2O, respectively.     

Rotationally resolved C2 symmetric conformers of bis-(4-hydroxyphenyl)methane: prototypical examples of excitonic coupling in the S1 and S2 electronic states

Rotationally resolved microwave and ultraviolet spectra of jet-cooled bis-(4-hydroxyphenyl)methane (b4HPM) have been obtained using Fourier-transform microwave and UV laser/molecular beam spectrometers. A recent vibronic level study of b4HPM [Rodrigo, C. P.; Mu?ller, C. W.; Pillsbury, N. R.; James, W. H., III; Plusquellic, D. F.; Zwier, T. S. J. Chem. Phys. 2011, 134, 164312] has assigned two conformers distinguished by the orientation of the in-plane OH groups and has identified two excitonic origins in each conformer. In the present study, the rotationally resolved bands of all four states have been well-fit to asymmetric rotor Hamiltonians. For the lower exciton (S(1)) levels, the transition dipole moment (TDM) orientations are perpendicular to the C(2) symmetry axes and consist of 41(2):59(2) and 34(2):66(2)% a:c hybrid-type character. The S(1) levels are therefore delocalized states of B symmetry and represent the antisymmetric combinations of the zero-order locally excited states of the p-cresol-like chromophores. The TDM polarizations of bands located at ≈132 cm(-1) above the S(1) origins are exclusively b-type and identify them as the upper exciton S(2) origin levels of A symmetry. The TDM orientations and the relative band strengths from the vibronic study have been analyzed within a dipole-dipole coupling model in terms of the localized TDM orientations, μ(loc), on the two chromophores. The out-of-the-ring plane angles of μ(loc) are both near 20° and are similar to results for diphenylmethane [Stearns, J. A.; Pillsbury, N. R.; Douglass, K. O.; Mu?ller, C. W.; Zwier, T. S.; Plusquellic, D. F. J. Chem. Phys. 2008, 129, 224305]. The in-plane angles are, however, rotated by 14 and 18° relative to DPM and, in part, explain the smaller than expected exciton splittings of these two conformers.     

Synthesis and structural studies of 16-ferrocenemethyl-estra-1,3,5(10)-triene-3,17β-diol and its interaction with human serum albumin by fluorescence spectroscopy and in silico docking approaches

16-Ferrocenylmethyl-estra-1,3,5(10)-triene-3,17β-diol crystallizes in a triclinic unit cell and P1 space group. It contains four crystallographic independent molecules in the unit, representing four different conformers of the ferrocene–hormone conjugate. It provides evidence of a low rotational barrier around C₁₉–C₂₀ and the existence of alpha and beta conformers. The four conformers are interconnected by hydrogen bonds through hydroxyl groups of rings A and D. Density functional theory studies show the rotational barrier energy to be 4.96 Kcal/mol and the preferred conformer has a dihedral angle φ2 (defined as C₁₆–C₁₉–C₂₀–C₂₁) of 85.79°. This angle represents the conformer with the lowest steric strains. Docking studies between the subject compound and human serum albumin (HSA) showed that the most likely binding pocket of HSA is drug-binding site 2. Quenching fluorescence spectroscopy was used to study HSA–ferrocene conjugate interaction and results showed that the complex formation was static and dominated by van der Waals and electrostatic/hydrogen bonding interactions.     

Spectroscopy of Ar-SH and Ar-SD. I. Observation of rotation-vibration transitions of a van der Waals mode by double-resonance spectroscopy

Rotation-vibration transitions of a van der Waals bending vibration, P = 1/2 <-- 3/2, of the Ar-SHSD (X 2pi) complexes in the electronic ground state have been observed by applying newly developed microwave-millimeter-wave double-resonance spectroscopy. The rotational energy-level structure for the two isotopomers, with hyperfine structure due to the hydrogen or deuterium nuclei and parity doublings in the P = 1/2 state, has now been clarified. Detailed explanation of the double-resonance technique is also given.     

Heavy atom tunneling in chemical reactions: study of H + LiF collisions

The H+LiF(X (1)sigma(+),upsilon=0-2,j=0)-->HF(X (1)sigma(+),upsilon',j')+Li(2S) bimolecular process is investigated by means of quantum scattering calculations on the chemically accurate X 2A' LiHF potential energy surface of Aguado et al. [A. Aguado, M. Paniagua, C. Sanz, and J. Roncero, J. Chem. Phys. 119, 10088 (2003)]. Calculations have been performed for zero total angular momentum for translational energies from 10(-7) to 10(-1) eV. Initial-state selected reaction probabilities and cross sections are characterized by resonances originating from the decay of metastable states of the H...F-Li and Li...F-H van der Waals complexes. Extensive assignment of the resonances has been carried out by performing quasibound states calculations in the entrance and exit channel wells. Chemical reactivity is found to be significantly enhanced by vibrational excitation at low temperatures, although reactivity appears much less favorable than nonreactive processes due to the inefficient tunneling of the relatively heavy fluorine atom strongly bound in van der Waals complexes.     

An ab initio investigation of the O(3P)-H2(1sigma(g)+) van der Waals well

We report an ab initio study of the van der Waals region of the O(3P)-H2 potential energy surface based on RCCSD(T) calculations with an aug-cc-pVQZ basis supplemented by bond functions. In addition, an open-shell implementation of symmetry-adapted perturbation theory (SAPT) is used to corroborate the RCCSD(T) calculations and to investigate the relative magnitudes of the various contributions to the van der Waals interaction. We also investigate the effect of the spin-orbit coupling on the position and depth of the van der Waals well. We predict the van der Waals minimum to occur in perpendicular geometry, and located at a closer distance than a secondary well in colinear geometry. The potentials obtained in the present study confirm the previous calculations of Alexander [M. H. Alexander, J. Chem. Phys., 1998, 108, 4467], but disagree with the earlier work of Harding and co-workers [Z. Li, V. A. Apkarian and L. B. Harding, J. Chem. Phys., 1997, 106, 942] as well as with recently refitted surfaces of Brand?o and coworkers [J. Brand?o, C. Mogo and B. C. Silva, J. Chem. Phys., 2004, 121, 8861]. Inclusion of spin-orbit coupling reduces the depth of the van der Waals minimum without causing a change in its position.