Convergent solid phase peptide synthesis. I. Synthesis of protected segments on a hydroxymethylphenyloxymethyl resin using the base labile FMOC α-amine protection. Model synthesis of LHRH.

Convergent solid phase peptide synthesis has been applied to yield LHRH. The segments 1–6 and 7–10 of LHRH were synthesized on a hydroxymethylphenyloxymethyl resin using the base labile Fmoc protecting group on the α-amines. The side chains were protected by HF labile groups. Purification of the segments was performed on Sephadex LH-20 columns and by HPLC on Silica Gel 60 columns. The two segments were then assembled on an α-aminobenzyl resin to yield entire sequence of LHRH. After HF treatment and standard purification on Sephadex G-15 and carboxymethylcellulose CM-52 the desired LHRH was obtained. Synthesis of the segments by the same strategy on carbazoyloxymethylphenyloxymethyl resin showed up unexpected difficulties.     

GHD室温自交联乳液的聚合及贮存稳定性

采用半连续种子乳液聚合技术合成了含甲基丙烯酸缩水甘油酯(GMA)、甲基丙烯酸羟乙酯(HEMA)和甲基丙烯酸二甲氨基乙酯(DMAEMA)的室温自交联乳液(GHD).实验结果表明,在甲基丙烯酸甲酯(MMA)-丙烯酸丁酯(BA)-GMA种子乳液存在下,聚合温度升高,聚合过程稳定性下降,但乳液的贮存稳定性提高;乳化单体滴加速度加快,种子聚合物的玻璃化温度升高,可减少聚合过程的交联凝聚作用,提高聚合过程的稳定性;而HEMA和DMAEMA用量增加对聚合过程的稳定性没有明显影响,但使乳液的贮存稳定性下降.官能团间的交联凝聚作用可能是影响室温自交联乳液聚合及贮存过程稳定性的关键因素.     

Eco‐Friendly Combination of the Immobilized PGA Enzyme and the S‐Phacm Protecting Group for the Synthesis of Cys‐Containing Peptides

Enzyme‐labile protecting groups have emerged as a green alternative to conventional protecting groups. These groups introduce a further orthogonal dimension and eco‐friendliness into protection schemes for the synthesis of complex polyfunctional organic molecules. S‐Phacm, a Cys‐protecting group, can be easily removed by the action of a covalently immobilized PGA enzyme under very mild conditions. Herein, the versatility and reliability of an eco‐friendly combination of the immobilized PGA enzyme and the S‐Phacm protecting group has been evaluated for the synthesis of diverse Cys‐containing peptides.     

Nucleosides,Part LXIV,Base‐Labile Protecting Groups for the Oligoribonucleotide Synthesis

New labile protecting groups for the anticipated synthesis of oligoribonucleotides were developed and introduced via their carbonochloridates 8 – 11 at the 5′‐O position of thymidine ( 15 ) to form 16 , 18 , 21 , and 24 in good yields (Schemes 2 and 3). Similarly, the 5′‐O‐diphenylphosphinoyl(dpp)‐protected thymidine derivative 27 was synthesized with diphenylphosphinoyl chloride 14 as the reactive reagent. With the help of the model compounds 16 , 18 , 21 , 24 , and 27 , the deprotection rates of these functions towards base treatment were recorded to evaluate their usefulness as temporary protecting groups in RNA assembly (Table). Finally, the relative stability of the 2‐(4‐nitrophenyl)ethoxycarbonyl (npeoc) protecting group towards bases confirmed its use as a permanent blocking group in our npe/npeoc strategy.     

Nucleotides. Part LXXIII

The (2‐cyano‐1‐phenylethoxy)carbonyl (2c1peoc) group was developed as a new base‐labile protecting group for the 5′‐OH function in solid‐phase synthesis of oligoribonucleotides via the phosphoramidite approach. The half‐lives of its β‐elimination process by 0.1M DBU (1,8‐diazabicyclo[5.4.0]undec‐7‐ene) were determined to be 7–14 s by HPLC investigations. The 2′‐OH function was protected with the acid‐labile tetrahydro‐4‐methoxy‐2H‐pyran‐4‐yl (thmp) group, while the 2‐(4‐nitrophenyl)ethyl (npe) and 2‐(4‐nitrophenyl)ethoxycarbonyl (npeoc) groups were used for the protection of the base and phosphate moieties. The syntheses of the monomeric building blocks, both phosphoramidites and nucleoside‐functionalized supports, as well as the build‐up of oligoribonucleotides by means of this approach are described.     

Ultrasound-accelerated synthesis of chiral allylic alcohols promoted by indium metal

The 2-iodomethyl-O-isopropylidine acetals undergo smoothly β-elimination by indium metal in methanol under sonication to afford the corresponding allylic alcohols in excellent yields with high selectivity. This method tolerates both acid and base labile functional and protecting groups and also free hydroxyl groups present in the molecule. Improved yields and enhanced rates are the remarkable features obtained by ultrasound.     

1-Methyl 1′-cyclopropylmethyl (MCPM) as an anomeric protecting group

A pragmatic approach for preparing glycoconjugates of complex oligosaccharides is to prepare the oligosaccharide as a building block with most of its protecting groups exchanged to protecting groups whose cleavage and other manipulations are highly compatible with the functional groups of complex aglycones. For such an approach the reducing end sugar of the building bloc must be protected with a cleavable protecting group during the oligosaccharide synthesis. We demonstrate that the acid labile 1-methyl 1′-cyclopropylmethyl (MCPM) can be effectively used for this purpose. A trisaccharide glycolipid and a disaccharide glycoamino acid are prepared. The absolute chirality of the MCPM in one key acceptor is determined by a combination of NMR NOE measurements, DFT molecular modeling and Noyori catalyst catalyzed asymmetric reduction.     

Photoprotected Peptide α‐Ketoacids and Hydroxylamines for Iterative and One‐Pot KAHA Ligations: Synthesis of NEDD8

The convergent synthesis of proteins by multiple ligations requires segments protected at the N‐ and/or C‐terminus with masking groups that are orthogonal to the acid‐ and base‐labile protecting groups used in Fmoc‐SPPS. They must be stable to solid‐phase peptide synthesis, HPLC purification, and ligation conditions and easily removed in the presence of unprotected side chains. In this report, we document photolabile protecting groups for both α‐ketoacids and hydroxylamines, the key functional groups employed in the α‐ketoacid–hydroxylamine (KAHA) ligation. The novel photoprotected α‐ketoacid is easily installed onto numerous different C‐terminal peptide α‐ketoacids and removed by UV light under aqueous conditions. These advances were applied to the one‐pot synthesis of NEDD8, an important modifier protein, by three different convergent routes. These new protecting groups provide greater flexibility on the order of fragment assembly and reduce the number of reaction and purification steps needed for protein synthesis with the KAHA ligation.     

2′‐Deoxyuridine and 2′‐Deoxyisocytidine as Constituents of DNA with Parallel Chain Orientation: The Stabilization of the iCd⋅Gd Base Pair by the 5‐Methyl Group

Parallel‐stranded oligonucleotides containing 2′‐deoxyuridine ( 2 ) and 2′‐deoxyisocytidine ( 4 ) were synthesized. The phosphoramidite 11 employed in the solid‐phase synthesis carries a (dimethylamino)methylidene residue as amino‐protecting group. This group stabilizes the acid‐labile glycosylic bond of 4 and enables the base‐catalyzed deprotection of oligonucleotides without degrading the nucleoside 4 residues. Oligonucleotide duplexes incorporating the 5‐Me derivatives of 2 (→2′‐deoxythymidine) and 4 (→2′‐deoxy‐5‐methylisocytidine), which are more stable than those containing the unmethylated nucleosides, were also compared. Depending on the nearest‐neighbor environment, Me groups provide an additional stabilization through Me/Me contacts or Me/backbone interactions.     

Application of the NG-(2,2,5,7,8-pentamethylchroman-6-sulphonyl) derivative of FMOC-arginine to peptide synthesis

The trifluoroacetic acid labile pentamethylchromanylsulphonyl protecting group for the guanidino group of arginine has been used in conjunction with the base-labile Fmoc Nα protecting group for the synthesis of arginine-containing peptides.     

An easy approach for the acetylation of saccharidic alcohols. Applicability for regioselective protections

Cheap 4 Å molecular sieves can promote acetylation of carbohydrate hydroxyl functions with Ac₂O in absence of any co-reagent. The procedure is compatible with the presence of a variety of acid labile protecting groups and can be exploited for regioselective protections.     

Novel Fluoride‐Labile Nucleobase‐Protecting Groups for the Synthesis of 3′(2′)‐O‐Aminoacylated RNA Sequences

With the aim to develop a general approach to a total synthesis of aminoacylated t‐RNAs and analogues, we describe the synthesis of stabilized, aminoacylated RNA fragments, which, upon ligation, could lead to aminoacylated t‐RNA structures. Novel RNA phosphoramidites with fluoride‐labile 2′‐O‐[(triisopropylsilyl)oxy]methyl (=tom) sugar‐protecting and N‐{{2‐[(triisopropylsilyl)oxy]benzyl}oxy}carbonyl (=tboc) base‐protecting groups were prepared (Schemes 4 and 5), as well as a solid support containing an immobilized N⁶‐tboc‐protected adenosine with an orthogonal (photolabile) 2′‐O‐[(S)‐1‐(2‐nitrophenyl)ethoxy]methyl (=(S)‐npeom) group (Scheme 6). From these building blocks, a hexameric oligoribonucleotide was prepared by automated synthesis under standard conditions (Scheme 7). After the detachment from the solid support, the resulting fully protected sequence 34 was aminoacylated with L ‐phenylalanine derivatives carrying photolabile N‐protecting groups (→ 42 and 43 ; Scheme 9). Upon removal of the fluoride‐labile sugar‐ and nucleobase‐protecting groups, the still stabilized, partially with the photolabile group protected precursors 44 and 45 , respectively, of an aminoacylated RNA sequence were obtained (Scheme 9 and Fig. 3). Photolysis of 45 under mild conditions resulted in the efficient formation of the 3′(2′)‐O‐aminoacylated RNA sequence 46 (Fig. 4). Additionally, we carried out model investigations concerning the stability of ester bonds of aminoacylated ribonucleotide derivatives under acidic conditions (Table) and established conditions for the purification and handling of 3′(2′)‐O‐aminoacylated RNA sequences and their stabilized precursors.     

Post-Assembly Photomasking of Potassium Acyltrifluoroborates (KATs) for Two-Photon 3D Patterning of PEG-Hydrogels

Chemical ligation reactions of functional groups that can be masked with two-photon labile protecting groups provide a powerful technology for the three-dimensional patterning of molecules – including proteins – onto hydrogel scaffolds. In order to utilize readily prepared hydrogels constructed by the potassium acyltrifluoroborate (KAT)-hydroxylamine amide formation ligation for two-photon patterning, we have developed a unique post-polymerization protecting group strategy through the reaction of KATs and dithiols in water and deprotection by two-photon excitation. After precise 3D spatially confined light irradiation, the unprotected KATs undergo ligations with hydroxylamine-functionalized superfolder GFP and sulforhodamine B for the composition of three-dimensional patterns.     

Phosphine‐Free Stille–Migita Chemistry for the Mild and Orthogonal Modification of DNA and RNA

An optimized catalyst system of [Pd₂(dba)₃] and AsPh₃ efficiently catalyzes the Stille reaction between a diverse set of functionalized stannanes and halogenated mono‐, di‐ and oligonucleotides. The methodology allows for the facile conjugation of short and long nucleic acid molecules with moieties that are not compatible with conventional chemical or enzymatic synthesis, among them acid‐, base‐, or fluoride‐labile protecting groups, fluorogenic and synthetically challenging moieties with good to near‐quantitative yields. Notably, even azides can be directly introduced into oligonucleotides and (deoxy)nucleoside triphosphates, thereby giving direct access to “clickable” nucleic acids.     

Synthesis of fragments of anglerfish pre-proglucagon i mid ii (AGFI and AGFII)

Four fragments of the two pre-proglucagons from the Anglerfish (Lophius americanus) have been synthesised. The fragments, AGFI (35-40) and (105-110), and AGFII (34-38) and (103-108) were prepared by solution peptide synthesis using a combination of hydrogenolysable and acid labile protecting groups. The pivalic mixed anhydride method was generally used for coupling although occasionally the DCCI/HOBt method was employed. Final removal of acid labile protecting groups was achieved using trifluoroacetic acid.     

Convergent solid phase peptide synthesis vi : synthesis by the fmoc procedure with a modified protocol of two protected segments, sequence 5-17 and 18-31 of the neurotoxin ii of the scorpion androctonus australis hector.

Synthesis of two protected peptides thirteen and fourteen residues long, sequence 5-17, i.e. Fmoc-Tyr(cHex)- Ile-Val-Asp(Bzl)-Asp(Bzl)-Val-Asn-Cys(Acm)-Thr(Bzl)-Tyr(cHex)- Phe-Cys(Acm)-Gly-OH, and 18-31, i.e. Fmoc-Arg (Tos)-Asn-Ala- Tyr(cHex)-Cys(Acm )-Asn-Glu(Bzl)-Glu(Bzl)-Cys(Acm)-Thr(Bzl)- Lys(Z)-Leu-Lys(Z)-Gly-OH, of the scorpion neurotoxin II from , was performed by the solid phase method. The hydroxymethylphenoxymethyl copoly(styrene - 1% -divinylbenzene) type resin was used in combination with Fmoc-amino acids for both syntheses. A general protocol minimizing side reactions has been developed for the use of the base labile Fmoc--amino protecting group. The time of reaction with piperidine (50% in N,N'-dimethylformamide) has been shortened to three times one minute and coupling was performed mainly in methylene chloride with just dicyclohexyl or diisopropyl-carbodiimide. The side chain protecting groups of the Fmoc--amino acids were of the hydrogen fluoride labile type, which permitted, after trifluoroacetic acid cleavage of the peptide to resin ester bond, obtainment of protected peptides. The crude segments, precipitated from N,N'-dime- thylacetamide with water, were highly purified by HPLC and chemically characterized for future use in convergent solid phase assembling.     

Synthesis of photolabile o-nitroveratryloxycarbonyl (NVOC) protected peptide nucleic acid monomers

The chemical synthesis of peptide nucleic acid (PNA) monomers was accomplished using various combinations of the o-nitroveratryloxycarbonyl (NVOC) group (N-aminoethylglycine backbone) and base labile acyl-type nucleobase protecting groups (anisoyl for adenine and cytosine; isobutyryl for guanine), thus offering a photolithographic solid-phase PNA synthetic strategy compatible with photolithographic oligonucleotide synthesis conditions and allowing the in situ synthesis of PNA microarrays in an essentially neutral medium, by avoiding the use of the commonly used deprotection reagents such as trifluoroacetic acid or piperidine. Convenient methods were also explored to prepare 1-(carboxymethyl)-4-N-(4-methoxybenzoyl)cytosine and 9-(carboxymethyl)-2-N-(isobutyryl)guanine with good yields.     

A comprehensive approach to the synthesis of sulfate esters

A comprehensive approach to the synthesis of sulfate esters was developed. This approach permits the direct and high-yielding synthesis of protected sulfate monoesters. Subsequent deblocking to reveal sulfate monoesters is accomplished in near-quantitative yield. The exceptionally stable neopentyl protecting group and the labile isobutyl protecting group were utilized in the synthesis of aromatic and aliphatic sulfate monoesters. Strategies for tuning protecting group reactivity were also explored and developed.     

Transient silylation of the guanosine O6 and amino groups facilitates N-acylation

[reaction: see text] The formation of a guanosine derivative silylated at both the O6 and amino groups was identified by (15)N NMR. This intermediate allows facile reaction with acetyl chloride or phenoxyacetyl chloride to give in high yield the corresponding N-protected guanosine derivatives, suitable for use in RNA synthesis. The acetyl and phenoxyacetyl amino protecting groups are, respectively, 4 and 230 times more labile than the isobutyryl group to methylamine/ethanol deprotection.     

醇(酚)羟基的硅烷化保护与去保护研究进展

醇(酚)羟基的硅烷化保护是一类重要的有机合成手段,目的在于使羟基稳定化,消除或减轻其引起的副反应。保护基中硅原子连接的基团空间位阻越小,该保护基的反应活性越大,生成的相应硅醚的稳定性则越差,在弱酸或弱碱的条件下即可脱除;硅原子连接的基团越大,该保护基的反应活性则越小,硅醚化反应越难发生,需要借助催化剂才能进行。本文尽可能全面地论述了有机硅烷保护基的类型,如三甲基硅烷、三乙基硅烷、叔丁基二甲基硅烷、三异丙基硅烷、苯基取代硅烷和桥型硅烷等,并讨论了其在不同环境下的活性及稳定性。