Analytical and preparative native polyacrylamide gel electrophoresis: Investigation of the recombinant and natural major grass pollen allergen Phl p 2

Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and Western blot are amongst the most popular methods for allergen characterization, such as comparison of recombinant allergens with their natural counterparts. Native PAGE was evaluated as a possible robust and simple method offering high-resolution capacity for characterization of the major grass pollen allergen Phl p 2. Analytical separation of recombinant Phl p 2 provided a superior quality control in terms of homogeneity and, after Western blotting, immunoglobulin E (IgE) reactivity. Separation of natural Phl p 2 identified two major isoforms which were shown to have different N-terminal sequences and IgE-binding properties. After isolation using preparative native PAGE in combination with electrodialysis, both isoforms were investigated by specific proteolysis and reversed-phase high-performance liquid chromatography (RP-HPLC). The results demonstrate differences in the primary structures and that the recombinant counterpart corresponds exactly to one isoform. Analytical and preparative native PAGE thus proved to be powerful tools for the investigation of allergen isoforms and quality control of recombinant counterparts.     

Chiral separation of the β2‐sympathomimetic fenoterol by HPLC and capillary zone electrophoresis for pharmacokinetic studies

The development of methods for the separation of the enantiomers of fenoterol by chiral HPLC and capillary zone electrophoresis (CZE) is described. For the HPLC separation precolumn fluorescence derivatization with naphthyl isocyanate was applied. The resulting urea derivatives were resolved on a cellulose tris(3,5‐dimethylphenylcarbamate)‐coated silica gel column employing a column switching procedure. Detection was carried out fluorimetrically with a detection limit in the low ng/mL range. The method was adapted to the determination of fenoterol enantiomers in rat heart perfusates using liquid–liquid extraction. As an alternative a CE method was used for the direct separation of fenoterol enantiomers comparing different cyclodextrin derivatives as chiral selectors. Copyright © 2010 John Wiley & Sons, Ltd.     

Development and validation of a capillary electrophoresis method for the characterization of sulfoethyl cellulose

To characterize sulfoethyl cellulose el samples, a capillary electrophoresis method was developed and validated sulfoethyl cellulose el was hydrolyzed, and the resulting d ‐glucose derivatives were analyzed after reductive amination with 4‐aminobenzoic acid using 150 mM boric acid, pH 9.5, as background electrolyte at 20°C and a voltage of 28 kV. Peak identification was derived from capillary electrophoresis with mass spectrometry using 25 mM ammonia adjusted to pH 6.2 by acetic acid as electrolyte. Besides mono‐, di‐, and trisulfoethyl d ‐glucose small amounts of disaccharides could be identified resulting from incomplete hydrolysis. The linearity of the borate buffer‐based capillary electrophoresis method was evaluated using d ‐glucose in the concentration range of 3.9–97.5 μg/mL, while limits of detection and quantification derived from the signal‐to‐noise ratio of 3 and 10 were 0.4 ± 0.1 and 1.2 ± 0.3 μg/mL, respectively. Reproducibility and intermediate precision were determined using a hydrolyzed sulfoethyl cellulose el sample and ranged between 0.2 and 8.8% for migration times and between 0.3 and 10.4% for peak area. The method was applied to the analysis of the degree of substitution of synthetic sulfoethyl cellulose el samples obtained by variation of the synthetic process and compared to data obtained by elemental analysis.     

Separation and determination of carnosine-related peptides using capillary electrophoresis with laser-induced fluorescence detection

A capillary electrophoresis (CE) method with laser-induced fluorescence (LIF) detection was developed for the separation and detection of carnosine-related peptides (carnosine, anserine, and homocarnosine). A sensitive and fluorogenic regent, 3-(4-carboxybenzoyl) quinoline-2-carboxaldehyde (CBQCA) was selected as a precapillary labeling reagent for imidazole dipeptides to form isoindole derivatives. The optimized molar ratio between CBQCA and peptide was found to be 75:1, and 50 mmol/L borate buffer (pH 9.2) was used for the derivatization in order to achieve good efficiency. Three imidazole dipeptides were baseline-separated within 20 min by using 112 mmol/L sodium borate (pH 10.4-10.8) as running buffer. Concentration detection limits (signal-to-noise ratios) for carnosine, anserine, and homocarnosine were 4.73, 4.37, and 3.94 nmol/L, respectively. This method has been applied to the analysis of human cerebrospinal fluid (CSF) and meat dry powder of pig and sheep. Recoveries were in the range of 82.9-104.8% for homocarnosine in CSF. For carnosine and anserine, the recoveries are 98.3% and 80.2% in meat dry powder of pig and 111.2% and 112.8% in meat dry powder of sheep, respectively.     

Synthesis and Structure of Novel Thieno[2, 3‐d]Pyrimidine Derivatives Containing 1, 3, 4‐Oxadiazole Moiety

The reaction of 5‐(1‐pyrrolyl)‐4‐methyl‐2‐phenylthieno[2, 3‐d]pyrimidine carbohydrazide 5 with CS₂ in the presence of pyridine afforded the 6‐(2, 3‐dihydro‐2‐mercapto‐1, 3, 4‐oxadiazol‐5‐yl)‐4‐methyl‐5‐(1‐pyrrolyl)‐2‐phenylthieno[2, 3‐d]pyrimidine 6 , which reacted with methyl iodide in the presence of sodium methoxide to yield the 6‐(2‐methylthio‐1, 3, 4‐oxadiazol‐5‐yl)‐4‐methyl‐5‐(1‐pyrrolyl)‐2‐phenyl‐thieno[2, 3‐d]pyrimidine 7. The 6‐(2‐substituted‐1, 3, 4‐oxadiazol‐5‐yl)‐2‐phenylthieno[2, 3‐d]pyrimidine derivatives 9, 11 and 13 were obtained by the condensation of 6‐(2‐methylthio‐1, 3, 4‐oxadiazol‐5‐yl)‐2‐phenylthieno[2, 3‐d]pyrimidine 7 with appropriate secondary amines. The structure of the new compounds was substantiated from their IR, UV‐vis spectroscopy, ¹H NMR, mass spectra, elemental analysis and X‐ray crystal analysis.     

Ionic liquids as additives for separation of benzoic acid and chlorophenoxy acid herbicides by capillary electrophoresis

Ionic liquids (ILs) were tested as additives to phosphate-acetate buffer for the separation of chlorophenoxy and benzoic herbicide acids. The effects of buffer concentration, buffer pH, IL concentration, and concentration of organic solvent were investigated. It was found that in the presence of 40 mM phosphate-acetate containing 10% acetonitrile at pH 4.5, addition of 10 mM 1-butyl-3-methylimidazoium could reverse EOF. The shoulder-merged peaks of two herbicide acids, 2,4-dichlorobenzoic acid and 3,5-dichlorobenzoic acid, were successfully resolved by the addition of IL cation. Apart from these, results showed different IL cations had different influences on the migration behavior of some of the analytes, while IL anions did not lead to obvious difference on the separation.     

Synthesis,Crystal Structure and Magnetic Properties of a 1‐D Polymer, [Cu(NITpPy)2(H2TCB)(H20)]·2H2O

A novel complex [Cu(NnpPy)₂(H_lTCB)(H₁O)]·2H₂O (NITpPy = 2‐(pyrid‐4′‐yl)‐4,4,5,5‐tetramethyl‐1, 3‐dioxoimidazoline; H₂TCB = 1, 5‐dicarboxybenzene carboxylic‐2, 4‐diacid) has been synthesized and characterized by X‐ray crystallography analysis. The crystal structure consists of infinite chains of Cu‐(NITpPy)₂(H₂O) units linked by H₂TCB ligands. The complex crystallizes in triclinic system with space group PI. Crystal data: a = 1.0594(2) nm, b = 1.3830(3) nm, c = 1.5551(3) nm, a = 67.75(3)°, β = 89.83(3)°, γ = 70.54(3)°. The variable magnetic susceptibility studies lead to magnetic coupling constant values of J₁= ?11.18 cm‐¹ (Cu—Rad) and J₂ = ?4.06 cm^?1 (Cu—Cu).     

Binding Ensembles of p53-MDM2 Peptide Inhibitors by Combining Bayesian Inference and Atomistic Simulations

Designing peptide inhibitors of the p53-MDM2 interaction against cancer is of wide interest. Computational modeling and virtual screening are a well established step in the rational design of small molecules. But they face challenges for binding flexible peptide molecules that fold upon binding. We look at the ability of five different peptides, three of which are intrinsically disordered, to bind to MDM2 with a new Bayesian inference approach (MELD × MD). The method is able to capture the folding upon binding mechanism and differentiate binding preferences between the five peptides. Processing the ensembles with statistical mechanics tools depicts the most likely bound conformations and hints at differences in the binding mechanism. Finally, the study shows the importance of capturing two driving forces to binding in this system: the ability of peptides to adopt bound conformations (ΔGconformation) and the interaction between interface residues (ΔGinteraction).     

Novel monofunctional and bifunctional boronic acid‐functionalized squarylium dyes as precolumn and on‐column labels for protein analysis by capillary electrophoresis with laser‐induced fluorescence

This article presents a continuous capillary electrophoresis with laser‐induced fluorescence (CE‐LIF) following spectral studies of the noncovalent interactions between novel Squarylium Boronic Acid 4 (SQ‐BA4) & Squarylium Diboronic Acid 2 (SQ‐DBA2) squarylium dyes and human serum albumin (HSA). Two protocols were used wherein the on‐column‐labeling protocol was found to be more sensitive than the precolumn one by showing a better enhancement in the peak area of the HSA–dye complex besides lower limits of detection (LODs) for HSA. Also, stability studies were conducted with or without HSA using precolumn‐labeling mode over one week exhibiting the superiority of SQ‐BA4 to SQ‐DBA2. Then, a mixture containing three model proteins, HSA, β‐lactoglobulin B, and transferrin, was labeled on‐column with both dyes and completely resolved by CE‐LIF after optimization of several parameters. Both dyes provided lower LODs for HSA than those of β‐lactoglobulin B and transferrin with higher sensitivities. In addition, the SQ‐BA4 dye showed again greater sensitivities with all the three proteins than SQ‐DBA2.     

Identification of new regional marker proteins to map mouse brain by 2-D difference gel electrophoresis screening

To screen for new region-specific protein markers we compared the proteome maps of the primary visual and somatosensory areas V1 and S1 in mouse brain using 2-D difference gel electrophoresis (2-D DIGE). Twenty-three protein spots showed a statistically significant difference in expression level between V1 and S1, with 52% appearing more abundantly in V1. Twenty-six proteins were mass spectrometrically identified in 22 spots. To assess the validity of this list of potential areal markers generated by 2-D DIGE, the effective area-specific distribution profile of creatine kinase brain subtype (CKB), a protein with a clearly higher expression level in S1, was monitored with in situ hybridization. The mRNA expression profile of CKB displayed a clear area-specific distribution, which allowed demarcation of S1 and its topographical borders with neighboring neocortical areas. This proteomic study demonstrates the innovative application of 2-D DIGE and MS to select new regional markers for neuroscience research.     

Separation and determination of 2,4-D, dicamba and 2,4,5-T in tobacco by nonaqueous capillary electrophoresis

A practical method for residue analysis of 2,4-D, dicamba and 2,4,5-T in baked tobacco leaves has been developed using nonaqueous CE (NACE). The herbicide residues of 2,4-D, dicamba and 2,4,5-T in tobaccos were extracted by ultrasonication with ethyl acetate, followed by a cleanup procedure with gel permeation chromatography. The separation of 2,4-D, dicamba and 2,4,5-T by NACE was optimized based on orthogonal experiment design with four factors at three levels. The optimal NACE condition was established with the running buffer of 40.0 mmol/L ammonium acetate in 90% CH3CN (apparent pH 10.2), and the applied voltage of -25 kV over a capillary of 50 microm id x 46 cm (37.5 cm to the detector window), which gave a baseline separation of 2,4-D, dicamba and 2,4,5-T within 15 min. The LOD were ca. 0.4-0.6 microg/mL for the three herbicides, whereas the overall recovery ranged from 80.8 to 84.1%. The proposed method has been successfully applied to measure 300 real tobacco samples, and the residue profiles of the three herbicides in tobacco samples were obtained and evaluated.     

Synthesis of 4‐Arylisocoumarins (=4‐Aryl‐1H‐2‐benzopyran‐1‐ones) through Acidic Hydrolysis of (Z)‐2‐(1‐Aryl‐2‐methoxyethenyl)benzaldehydes,Followed by Oxidation

4‐Arylisocoumarins (=4‐aryl‐1H‐2‐benzopyran‐1‐ones) 6 were prepared from 2‐(1‐aryl‐2‐methoxyethenyl)‐1‐bromobenzenes 1 . Successive treatment of these bromo styrenes with BuLi and 1‐formylpiperidine gave a mixture of (E)‐ and (Z)‐2‐(1‐aryl‐2‐methoxyethenyl)benzaldehydes 2 . Hydrolysis of (Z)‐isomers with conc. HBr, followed by pyridinium chlorochromate (PCC) oxidation of the resulting 1H‐2‐benzopyran‐1‐ol derivatives 4 (and 5 ), afforded the desired products.     

Isolation, identification and characterisation of starch-interacting proteins by 2-D affinity electrophoresis

A 2-D affinity electrophoretic technique (2-DAE) has been used to isolate proteins that interact with various starch components from total barley endosperm extracts. In the first dimension, proteins are separated by native PAGE. The second-dimensional gel contains polysaccharides such as amylopectin and glycogen. The migration of starch-interacting proteins in this dimension is determined by their affinity towards a particular polysaccharide and these proteins are therefore spatially separated from the bulk of proteins in the crude extract. Four distinct proteins demonstrate significant affinity for amylopectin and have been identified as starch branching enzyme I (SBEI), starch branching enzyme IIa (SBEIIa), SBEIIb and starch phosphorylase using polyclonal antibodies and zymogram activity analysis. In the case of starch phosphorylase, a protein spot was excised from a 2-DAE polyacrylamide gel and analysed using Q-TOF MS/MS, resulting in the alignment of three internal peptide sequences with the known sequence of the wheat plastidic starch phosphorylase isoform. This assignment was confirmed by the determination of the enzyme's function using zymogram analysis. Dissociation constants (Kd) were calculated for the three enzymes at 4 degrees C and values of 0.20, 0.21 and 1.3 g/L were determined for SBEI, SBEIIa and starch phosphorylase, respectively. Starch synthase I could also be resolved from the other proteins in the presence of glycogen and its identity was confirmed using a polyclonal antibody and by activity analysis. The 2-DAE method described here is simple, though powerful, enabling protein separation from crude extracts on the basis of function.     

The Environmentally Friendly Energetic Salt (ATZ)(TNPG) Based on 4‐Amino‐1, 2, 4‐triazole (ATZ) and Trinitrophloroglucinol (TNPG)

The environmentally friendly energetic salt (ATZ)(TNPG) (ATZ = 4‐amino‐1, 2, 4‐triazole, TNPG = trinitrophloroglucinol) was synthesized and characterized by elemental analysis and FT‐IR spectroscopy. The crystal structure was determined by X‐ray single crystal diffraction. It crystallizes in monoclinic space group P2₁/c and its crystal density is 1.832 g · cm^–3. Thermal decomposition mechanisms were investigated through differential scanning calorimetry (DSC) and thermogravimetric analysis (TGA). In addition, the experimental data showed that the energy of combustion was approximately equal to the energies of combustion of RDX (1, 3, 5‐trinitro‐1, 3, 5‐triazacyclohexane) and HMX (1, 3, 5, 7‐tetranitro‐1, 3, 5, 7‐tetraazocane). The non‐isothermal kinetics parameters were also studied by applying Kissinger's, Ozawa's, and Starink's methods. Determination of the sensitivities revealed higher sensitivities of (ATZ)(TNPG) as compared to (ATZ)(PA) (PA = picrate).     

EPR Spectroscopy of 4, 4′‐Bis(tert‐butyl)‐2, 2′‐bipyridine‐1, 2‐dithiolatocuprates(II) in Host Lattices with Different Coordination Geometries

A series of new heteroleptic MN₂S₂ transition metal complexes with M = Cu²⁺ for EPR measurements and as diamagnetic hosts Ni²⁺, Zn²⁺, and Pd²⁺ were synthesized and characterized. The ligands are N₂ = 4, 4′‐bis(tert‐butyl)‐2, 2′‐bipyridine (tBu₂bpy) and S₂ =1, 2‐dithiooxalate, (dto), 1, 2‐dithiosquarate, (dtsq), maleonitrile‐1, 2‐dithiolate, or 1, 2‐dicyanoethene‐1, 2‐dithiolate, (mnt). The Cu^II complexes were studied by EPR in solution and as powders, diamagnetically diluted in the isostructural planar [Ni^II(tBu₂bpy)(S₂)] or[Pd^II(tBu₂bpy)(S₂)] as well as in tetrahedrally coordinated[Zn^II(tBu₂bpy)(S₂)] host structures to put steric stress on the coordination geometry of the central CuN₂S₂ unit. The spin density contributions for different geometries calculated from experimental parameters are compared with the electronic situation in the frontier orbital, namely in the semi‐occupied molecular orbital (SOMO) of the copper complex, derived from quantum chemical calculations on different levels (EHT and DFT). One of the hosts, [Ni^II(tBu₂bpy)(mnt)], is characterized by X‐ray structure analysis to prove the coordination geometry. The complex crystallizes in a square‐planar coordination mode in the monoclinic space group P2₁/a with Z = 4 and the unit cell parameters a = 10.4508(10) Å, b = 18.266(2) Å, c = 12.6566(12) Å, β = 112.095(7)°. Oxidation and reductions potentials of one of the host complexes, [Ni(tBu₂bpy)(mnt)], were obtained by cyclovoltammetric measurements.     

2-D Supramolecular Network and Photoluminescence of a Coupled 1,4-Dihydrylpyridine

A coupled 1,4-dihydrylpyridine compound(C40H48N2O10,1) has been synthesized.Its structure was determined by single-crystal X-ray diffraction.The crystal is of monoclinic system,space group P21/c with a = 8.3300(2),b = 15.720(3),c = 14.480(3) ,β = 90.08(3)°,V = 1896.1(7) 3,Z = 2,Mr = 716.80,Dc = 1.255 g/cm3,and F(000) = 764.The structure was solved by direct methods and refined by full-matrix least-squares method to the final R = 0.0556 and wR = 0.1499(I > 2σ(I)).There exist several supramolecular motifs in the crystal structure.The compound exhibits strong photoluminescence in the solid state at room temperature.     

Iron(II) and Nickel(II) Complexes of N‐Alkylimidazoles and 1‐Methyl‐1H‐1, 2, 4‐Triazole: X‐ray Studies,Magnetic Characterization,and DFT Calculations

Using the ligands N‐methylimidazole ( MeIm ), N‐ethylimidazole ( EtIm ), N‐propylimidazole ( PrIm ), and 1‐methyl‐1H‐1, 2, 4‐triazole ( MeTz ) three series with a total of 13 iron(II) complexes were isolated. The series comprise of the following complexes: (a) [Fe( MeIm )₆](ClO₄)₂ ( 1 ), [Fe( EtIm )₆](ClO₄)₂ ( 2 ), [Fe( PrIm )₆](ClO₄)₂( 3 ), [Fe( MeTz )₆](ClO₄)₂ ( 4 ), [Fe( MeIm )₆](MeSO₃)₂ ( 5 ), [Fe( EtIm )₆](MeSO₃)₂ ( 6 ), and [Fe( MeTz )₆](BF₄)₂ ( 10 ); (b) [Fe( MeIm )₄(MeSO₃)₂]( 7 ), [Fe( EtIm )₄(MeSO₃)₂] ( 8 ), and [Fe( PrIm )₄(MeSO₃)₂] ( 9 ); (c) [Fe( MeIm )₄(NCS)₂] ( 15 ), [Fe( EtIm )₄(NCS)₂] ( 16 ), and [Fe( MeTz )₄(NCS)₂] ( 17 ). Single crystal X‐ray diffraction studies were performed on 7 – 10 and 15 – 17 . Temperature dependent magnetic susceptibility measurements were performed on selective examples of all series, and confirmed them to be in the HS state over the range 6–300 K. DFT calculations were performed at BP86/def‐SV(P) and TPSSh/def2‐TZVPP level on all [Fe L ₆]²⁺ complex cations and the neutral complexes 7 – 9 and 15 – 17 . Additionally the four homoleptic nickel(II) complexes [Ni L ₆](ClO₄)₂ ( 11 : L = MeIm ; 12 : L = EtIm ; 13 : L = PrIm ; 14 : L = MeTz ) were synthesized and compounds 11 – 13 structurally characterized. UV/Vis/NIR spectroscopic measurements were carried out on all homoleptic iron(II) and nickel(II) complexes. The 10Dq values were determined to be in the range of 11547–11574 and 10471–10834 cm^–1 for the iron(II) and nickel(II) complexes, respectively.     

Self-assembly of 1-D and 3-D transition-metal coordination polymers based on 4-(1H-l,3-benzimidazol-2-yl)pyridine 1-oxide

Three metal-organic coordination polymers based on 4-(1H-l,3-benzimidazol-2-yl)pyridine 1-oxide (BImPyO) with the molecular structures [Cu₂(C₁₂H₈N₃O)₂]_n (1), [Cu(C₁₂H₈N₃O)]_n (2), and [Zn(C₁₂H₈N₃O)Cl]_n (3) were synthesized under hydrothermal conditions. They showed diverse coordination modes and were further characterized by elemental analysis, infrared spectroscopy, and single crystal X-ray structure analysis, respectively. In 1 and 2, BImPyO generated a 1-D chain by adopting μ₂-kN?:?kN′ coordination to bridge two Cu(II) ions with bis-N-chelation. In 3, by adopting μ₃-kN?:?kN′:kO coordination, BImPyO bridged three crystallographically independent Zn(II) ions to form a 3-D framework; 3 exhibits strong fluorescent emission in the solid state at room temperature.