Quantum chemical studies of azoles 3. Thermodynamic stabilities of neutral molecules and intermediates formed in electrophilic substitution of azoles containing three or four heteroatoms

Density functional theory quantum chemical calculations of thermodynamic stabilities in the gas phase and in water were carried out for 1,3,4-oxadiazole and 1,3,4-thiadiazole, 1,2,4-1H-triazole and 1,2,4-4H-triazole, 1,2,3,4-1H-tetrazole and 1,2,3,4-2H-tetrazole molecules, and for cationic and bipolar (carbenoid) intermediates formed by these molecules in electrophilic substitution reactions (with proton as model electrophile) and the results obtained are compared. Differences in the chemical behavior of pairs of isomeric 1H- and 4H-1,2,4-triazoles and 1H- and 2H-tetrazoles are analyzed.     

Quantum chemical studies on electrophilic addition

The geometries of the 2-hydroxyethyl and isomeric oxiranium cations have been fully optimized using ab initio molecular orbital calculations employing the split valence shell 4-31G basis set. These species are possible intermediates in both the electrophilic addition of OH to ethylene and in the acid catalysed ring opening of oxirane. The optimized structures were then used to compute more accurate wave functions using Dunning's double-zeta basis set, and with this large basis set the bridged oxiranium ion was found to be the more stable by 7.2 kcal/mole. The barrier to interconversion of these two C₂H₄OH ions was computed to be 25.0 kcal/mole above the oxiranium ion.     

Quantum chemical studies on electrophilic addition

The geometries of the 2-aminoethyl cation and the isomeric protonated aziridine have been optimized using ab initio molecular orbital calculations employing the split-valence shell 4-31G basis set. The protonated aziridine is computed to be the more stable ion by 46.5 kcal/mole (4-31G level) and 44.9 kcal/mole (double-zeta basis set). The profile to interconversion is found to have a barrier of less than 15 kcal/mole (relative to the 2-aminoethyl cation) and this profile is compared with those computed for the similar ions XCH₂CH ₂ ⁺ where X=OH, F, SH and Cl.     

Quantum chemical studies on electrophilic addition

The geometries of the 2-chloroethyl and ethylenechloronium cations, two possible intermediates in the electrophilic addition of chlorine to ethylene, have been fully optimized using ab initio molecular orbital calculations employing the split valence shell 4-31G basis set.These geometries were then used to compute more accurate wave functions using Dunning's double-zeta basis set. The bridged chloronium ion was found to be more stable by 9.35 kcal/mole, the opposite order of stability from the C₂H₄F⁺ ions. Interconversion of the two C₂H₄Cl⁺ cations was computed to have a barrier of 6.25 kcal/mole.The activation energy for this chlorination reaction, using the ethylenechloronium cation and a chlorine anion at infinite separation as the model for the activated complex, was computed to be 128.7 kcal/mole, showing that this is not a feasible gas phase reaction.     

Quantum chemical studies of the oxidative alkylamination of diazinones

The B3LYP/6-31G** quantum chemical method was used to study the mechanism of the oxidative alkylamination of diazinones taking 1,3,6-trimethylpyrimido[4,5-d]pyrimidine-2,4,7(1H,3H,6H)-trione (lumazinone) as an example. The first limiting step of this reaction included a nucleophilic addition of alkylamine with the formation of the σ^H-adduct, which was oxidized by potassium permanganate in the second step. The alkylamination step proceeded in the associates formed by the lumazinone dimer and several alkylamine molecules involved in both the nucleophilic attack and the bifunctional catalysis of the process. The correlation of the Parr indices with the experimental data was studied for a number of diazinones.     

Quantum chemical studies on 1 charged forms of nitroglycerine

Semiempirical quantum chemical calculations at the level of AM1 (UHF) method are performed on the neutral as well as 1 charged systems originated from nitroglycerine. The geometry optimized systems standing for 1 charged forms fragmented. All the neutral and charged systems are found to be stable and exothermic with the exception of cationic system which is endothermic in nature. The fragmentation occurs by the cleavage of ester O–N bond of the terminal ester group in the charged forms while in the cationic form also the rapture of C–C bond occurs.     

Quantum chemical studies of ethylene addition to organoaluminium compounds

In terms of the MINDO/3 method, the surface potential energy of ethylene addition to AlH₃ and Al(CH₃)₃ has been calculated.

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MINDO/3 AlH₃ Al(CH₃)₃.

     

Quantum chemical studies on newly synthesized tin anticancer compounds

The electronic structure of newly synthesized tin anticancer complexes coordinating one, two and four tin atoms has been studied both at semiempirical level and by using ab initio methods at the correlation level. The most probable structures of the systems under consideration have been determined being in a good agreement with the relevant experimental results. The compounds show very effective antitumor cytotoxic activity against A549 and HSMC cells.     

Quantum chemical studies of three-photon absorption of some stilbenoid chromophores

Three-photon absorption of a series of donor-acceptor trans-stilbene derivatives is studied by means of density functional theory applied to the third-order response function and its residues. The results obtained by using different functionals are compared with experimental data for similar systems obtained from the literature. With a Coulomb attenuated, asymptotically corrected functional, the excitation energy to the first resonance state is much improved. Comparison with experiment indicates that this is the case for the three-photon cross section as well. In particular, the overestimation of the cross sections and underestimation of excitation energies offered by the density functional theory using common density functionals is corrected for. It is argued that a reliable theory for three-photon absorption in charge transfer and other chromophore systems thereby has been obtained. Further elaboration of the theory and its experimental comparison call for explicit inclusion of solvent polarization and pulse propagation effects.     

有机氟化合物量子化学研究 I: 二氟乙炔分子中化学键特性的从头计算

实验发现, F-C≡C-F与H-C≡C-H相比, 其C≡C三重键的离解能要小250.8kJ/mol,而该键的键长却比C~2H~2的短。这与"键越短键就越强"的传统看法不一致。我们通过从头计算研究, 发现主要原因是C~2F~2分子中F原子的孤对电子对C≡C三重键起反键作用, 从而削弱了C≡C三重键的强度; F原子的吸电子性又使C的原子轨道收缩效应增强,而使得C≡C三重键变短。     

Quantum chemical studies of mononuclear zinc species of hydration and hydrolysis

Optimal geometries, charge distributions, bond analysis, changes of Gibbs free energy, entropies and enthalpies of hydration, and hydrolysis reactions for mononuclear species of Zn(2+) including hydrated and hydrolysis complexes were investigated using quantum chemical calculations in the gas phase. Optimized geometrical structures showed that the stable hydrated and hydrolysis zinc species without outer-sphere water molecules were Zn(H(2)O)(6)(2+), Zn(OH)(H(2)O)(3)(+), Zn(OH)(2)(H(2)O)(2), Zn(OH)(3)(-), and Zn(OH)(4)(2-). Results of NPA (Natural Population Analysis) indicated that the charge on the Zn atom of the hydrated ions decreased but the charge on the zinc atom of the hydrolysis species increased with the increase of inner-sphere water molecules. NBO (Natural Bond Orbital) analyses demonstrated that hydrated and hydrolysis species of zinc were mainly electrostatic bonding compounds. Calculations of reaction energies indicated that inner-sphere water molecules became more unfavorable as the hydrolysis increased. Stepwise hydrolysis equilibrium constants decreased successively and the order remained unchanged when the inner-sphere dehydration occurred.     

Quantum chemical studies on antimalarial of artemisinin (qinghaosu) derivatives

In this paper theoretical studies were performed on artemisinin (qinghaosu) derivatives with semiempirical quantum chemical methods AMI and PM3. The antimalarial activity -logC has an obvious correlation with the net charge of C(16) and bond orders of bonds O(1)-C(10), O(2)-C(6), O(1)-O(2) and O(5)-C(16). According to the calculation results, we derived structure-activity relationship, presented the probable pharmacophore of qinghaosu derivatives and the interaction fashion between the drugs and the plasmodium receptor.     

Quantum chemical studies of FT-IR and Raman spectra of methyl 2,5-dichlorobenzoate

In this paper, experimental and theoretical studies on the molecular structure and vibrational spectra of methyl 2,5-dichlorobenzoate (MDCB) are presented. Fourier transform infrared and Raman spectra of the title molecule in the solid phase were recorded and analyzed. The geometrical parameters were calculated using DFT (B3LYP) with 6-311G(d,p) and 6-311++G(d,p) basis sets, and compared with the experimental data. The vibrational frequencies, infrared intensities and Raman scattering activities were also reported. The detailed assignments were given based on the total energy distribution of the vibrational modes, calculated with scaled quantum mechanics method. The observed and calculated frequencies are found to be in good agreement.     

Quantum chemical and x-ray spectral studies of the structures of superstoichiometric fluorocarbons

The possibility of hole formation in the structures of superstoichiometric fluorocarbons is studied. Different geometries are modeled by removing one, two, or six CF groups from the stoichiometric fluorocarbon lattice. The positions of fluorine atoms in the internal CF₂ groups are optimized using the semiempirical MNDO method. The quantum chemical calculations of fluorocarbon clusters containing holes of different geometries suggest the preferential formation of six-center hole structures in fluorocarbon lattices. The X-ray emission CK_α-spectra of the superstoichiometric CF_x (x=1.20 and 1.33) samples are obtained. Based on the cluster calculations, theoretical CK_α-spectra of CF_x are constructed. A comparison of the theoretical and experimental results shows that the spectra of the superstoichiometric fluorocarbons are characterized by a short-wave maximum, whose intensity increases with x. Deceased Institute of Inorganic Chemistry, Siberian Branch, Russian Academy of Sciences. Translated fromZhurnal Strukturnoi Khimii, Vol. 37, No. 6, pp. 1072–1080, November–December, 1996. Translated by I. Izvekova     

Quantum chemical studies on the tautomerism of some potentially tautomeric aminoindazole derivatives

The aqueous phase AM1, PM3, and PM5 calculation data had indicated that when a potentially tautomeric amino group is placed at 3C position of the indazole ring the ring-chain tautomerism becomes feasible. However, when the amino group is placed at 4–7C of the indazole ring only the annular tautomerism was found to be feasible and no effect of amino group to provoke a ring chain tautomerism was observed. On the other hand amino form of 3 amino substituted indazole was found to be predominant over imino forms whereas for the 4–7 amino substituted indazoles imino forms were found to be predominant over amino forms. The attempt to apply soft–hard base and soft nucleophile–electrophile criteria to protonation and tautomerism phenomena was successful.     

Quantum chemical studies on structure of 1-3-dibromo-5-chlorobenzene

Molecular structure and vibrational frequencies of 1-3-dibromo-5-chlorobenzene (DBCB) have been investigated by density functional theory (DFT) calculations using Becke's three-parameter exchange functional combined with Lee–Yang–Parr correlation (B3LYP) and standard basis set 6-31G. DFT (B3LYP/6-31G) calculations have been performed giving energies, optimized structure, harmonic vibrational frequencies, IR intensities, and Raman activities. Raman and IR spectra of the DBCB were recorded and complete assignment of the observed vibrational bands of DBCB has been proposed. The predicted first-hyperpolarizability of DBCB is 1.221 × 10⁻³⁰ esu, which suggests that the title compound is an attractive object for future studies of non-linear optical properties. The impact of di-substituted halogens on the compound has also been discussed. Besides, molecular electrostatic potential (MEP), HOMO–LUMO analysis and NBO analysis were performed at DFT level of theory The UV–vis spectral analysis of DBCB has also been done which confirms the charge transfer of the title compound.