Properties and <Emphasis Type="Italic">N</Emphasis>-glycosylation of recombinant endoglucanase II from <Emphasis Type="Italic">Penicillium verruculosum</Emphasis>

Cellulases are the main components of enzyme complexes used in biotransformation processes of plant raw materials into valuable commercial products. Endoglucanase II (EG II) from the Penicillium verruculosum fungus was cloned into Penicillium canescens. The homogeneous recombinant EGII form is isolated and its properties are studied in comparison with the native enzyme. The N-glycosylation sites and the structure of the N-linked glycans are been determined using mass spectrometry. The biochemical and catalytic properties, as well as the N-glycosylation type of the obtained recombinant EGII form, appear to be close to the native enzyme. At the two potential N-glycosylation sites (N42 and N194) of both forms of the enzyme, N-linked high mannose glycans (or their enzymatic “trimming” products) according to the general formula (Man)_1–9(GlcNAc)₂ are detected. No glycosylation is found at the third potential site (N19).     

Synthesis of <Emphasis Type="Italic">N</Emphasis>-and <Emphasis Type="Italic">C</Emphasis>-trimethylsilyl-substituded anililes

N-Metallation of bromoanilines with ethylmagnesium bromide followed by a reaction with trimethylchlorosilane provided N-mono and N-bis(trimethylsilyl)bromoanilines depending on the structure of substrate. The metallation of bissilylated bromoanilines with butyllithium permitted the introduction of a trimethylsilyl substituent in the aromatic ring. Previously unknown 2-bromo-N,N-bis(trimethylsilyl)aniline, 2,6-dibromo-N-trimethylsilylaniline, 2,6-dibromo-N,N-bis(trimethylsilyl)aniline, 2-bromo-6-trimethylsilylaniline, 2-bromo-6-trimethylsilyl-N,N-bis(trimethylsilyl)aniline, 2-bromo-6-trimethylsilyl-N-trimethylsilylaniline, 2,4,6-tribromo-N-trimethylsilylaniline, and 2,4,6-tribromo-N,N-bis(trimethylsilyl)aniline were prepared. The structures of the compounds obtained were established by the chromato-mass spectrometry and ¹H, ¹³C, and ²⁹Si NMR spectroscopy.     

Cycloaminomethylation of dihydric phenols catalyzed by <Emphasis Type="Italic">d</Emphasis>- and <Emphasis Type="Italic">f</Emphasis>-metal compounds

An efficient method has been developed for the synthesis of 7,16,25-triaryl-7,8,16,17,25,26-hexahydro-6H,15H,24H-tribenzo[f,m,t][1,5,8,12,15,19,3,10,17]hexaoxatriazacyclohenicosines, 3,8-diaryl-2,3,4,7,8,9-hexahydrobenzo[1,2-e:4,3-e′]bis[1,3]oxazines, 3,9-bis(chlorophenyl)-3,4,9,10-tetrahydro-2H,8H-benzo[1,2-e:3,4-e′]bis[1,3]oxazines, and 2,9-bis(chlorophenyl)-1,2,3,8,9,10-hexahydrobenzo[1,2-e:6,5-e′]bis-[1,3]oxazines via cycloaminomethylation of pyrocatechol, resorcinol, and hydroquinone with N,N-bis(methoxymethyl) anilines in the presence of samarium catalysts.     

Synthesis of ethyl (2<Emphasis Type="Italic">E</Emphasis>,4<Emphasis Type="Italic">E</Emphasis>)- and (2<Emphasis Type="Italic">E</Emphasis>,4<Emphasis Type="Italic">Z</Emphasis>)-5-chloropenta-2,4-dienoates

An efficient synthetic approach to 2E,4E and 2E,4Z isomers of ethyl 5-chloropenta-2,4-dienoate has been developed on the basis of one-pot oxidation–olefination of readily accessible (E)- and (Z)-3-chloroprop-2-en-1-ols by the action of barium manganate and ethyl (triphenyl-λ⁵-phosphanylidene)acetate.     

Formation of solvate structures by the <Emphasis Type="Italic">ortho</Emphasis>-, <Emphasis Type="Italic">meta</Emphasis>-, and <Emphasis Type="Italic">para</Emphasis>-isomers of hydroxybenzoic acid in supercritical fluid

The solvate structures formed by the ortho-, meta-, and para-isomers of hydroxybenzoic acid (o-HBA, m-HBA, and p-HBA) with a polar co-solvent (methanol at a concentration of 0.030 and 0.035 mole fractions) in supercritical carbon dioxide at a constant density of 0.7 g/cm³ and temperatures of 318 and 328 K have been studied by the classic molecular dynamics. It has been determined that a stable hydrogen-bonded complex with the co-solvent forms via the hydrogen of the carboxyl group for all isomers. The probability of this complex existence is high at all temperatures and concentrations. In the o-HBA molecule, the other functional groups are engaged in the intramolecular hydrogen bond, but not involved in interactions with methanol. It has been found that m-HBA and p-HBA can be involved in hydrogen bonds with methanol via hydroxyl hydrogen and oxygen atoms; they are characterized by the presence of one more co-solvent molecule (rarely, two molecules) in their solvation shell and intermittent formations/breakages of hydrogen bonds via other functional groups. These bonds are far less stable, and their formation is sensitive to change of temperature and co-solvent concentration. It has been concluded that the degree of selective solvation of m-HBA and p-HBA by co-solvent molecules is approximately the same, but the rate of structural rearrangements in the nearest environment of m-HBA is higher than that of p-HBA.     

<Emphasis Type="Italic">N</Emphasis>-aryl-<Emphasis Type="Italic">o</Emphasis>-iminobenzoquinones as novel regulators of radical polymerization

The effect of a number of quinoid compounds on methyl methacrylate polymerization initiated by azo-bis(isobutyronitrile) has been studied. It has been revealed that N-aryl-o-iminobenzoquinones, in contrast to o-benzoquinones, can provide radical polymerization of methyl methacrylate in controllable mode. The efficiency of the compounds as chain growth regulators has been found to depend on their composition and reaction conditions. It has been established that 4,6-di-tert-butyl-N-(2,6-diethylphenyl)-o-iminobenzoquinone and 4,6-di-tert-butyl-N-(2,6-diisopropylphenyl)-o-iminobenzoquinone under radical initiation conditions provide the synthesis of poly(methyl methacrylate) with wide-range molecular weight, retaining polydispersity indices about ~1.4–1.8 up to deep conversions.     

Mononuclear and heterodinuclear phenanthrolinedione complexes of <Emphasis Type="Italic">d</Emphasis>- and <Emphasis Type="Italic">f</Emphasis>-block elements

1,10-Phenanthroline-5,6-dione (Phd) complexes of group 3 and lanthanide elements having formulae Ln(hfac)₃(Phd) (Ln = Y, Eu, Yb; hfac = hexafluoroacetylacetonate) were synthesised and characterised. Complexes of d-block elements of the type [MCl(Phd)(p-cymene)]⁺ (M = Ru, Os) were also prepared. In all these species, coordination of the polydentate ligand occurs by the N-donor moieties, as indicated by DFT calculations. The novel compounds were tested, together with fac-ReBr(Phd)(CO)₃, as precursors for the preparation of heterobimetallic d/f derivatives. The reaction of the rhenium complex with yttrium or lanthanide anhydrous triflate salts led to the formation of the complexes ReBr(CO)₃(N,N′-Phd-O,O′)Ln(OTf)₃(THF) (Ln = Y, Eu, Yb), where the trivalent ions interacted with the quinonoid moiety. The redox properties of the rhenium centre were strongly affected by the coordination of Ln(OTf)₃, as observed by comparing the cyclic voltammetry measurements carried out on fac-ReBr(Phd)(CO)₃ and on ReBr(CO)₃(N,N′-Phd-O,O′)Y(OTf)₃.     

<Emphasis Type="Italic">CrMAPK3</Emphasis> regulates the expression of iron-deficiency-responsive genes in <Emphasis Type="Italic">Chlamydomonas reinhardtii</Emphasis>

Background

Under iron-deficient conditions, Chlamydomonas exhibits high affinity for iron absorption. Nevertheless, the response, transmission, and regulation of downstream gene expression in algae cells have not to be investigated. Considering that the MAPK pathway is essential for abiotic stress responses, we determined whether this pathway is involved in iron deficiency signal transduction in Chlamydomonas.

Results

Arabidopsis MAPK gene sequences were used as entry data to search for homologous genes in Chlamydomonas reinhardtii genome database to investigate the functions of mitogen-activated protein kinase (MAPK) gene family in C. reinhardtii under iron-free conditions. Results revealed 16 C. reinhardtii MAPK genes labeled CrMAPK2–CrMAPK17 with TXY conserved domains and low homology to MAPK in yeast, Arabidopsis, and humans. The expression levels of these genes were then analyzed through qRT-PCR and exposure to high salt (150 mM NaCl), low nitrogen, or iron-free conditions. The expression levels of these genes were also subjected to adverse stress conditions. The mRNA levels of CrMAPK2, CrMAPK3, CrMAPK4, CrMAPK5, CrMAPK6, CrMAPK8, CrMAPK9, and CrMAPK11 were remarkably upregulated under iron-deficient stress. The increase in CrMAPK3 expression was 43-fold greater than that in the control. An RNA interference vector was constructed and transformed into C. reinhardtii 2A38, an algal strain with an exogenous FOX1:ARS chimeric gene, to silence CrMAPK3. After this gene was silenced, the mRNA levels and ARS activities of FOX1:ARS chimeric gene and endogenous CrFOX1 were decreased. The mRNA levels of iron-responsive genes, such as CrNRAMP2, CrATX1, CrFTR1, and CrFEA1, were also remarkably reduced.

Conclusion

CrMAPK3 regulates the expression of iron-deficiency-responsive genes in C. reinhardtii.

     

Compositions and structures of nanoparticles of trigonal symmetry <Emphasis Type="Italic">D</Emphasis><Subscript>3<Emphasis Type="Italic">d</Emphasis></Subscript>: Nanotubes

A method has been developed for the determination of the structure and number of atoms in the shells of nanoparticles as a function of the arrangement of atoms at the symmetry elements of a symmetry group. The formulas for calculation of the number of particles of symmetry D _3d have been reported. It has been shown that the number of atoms in trigonal shells is determined by three structurally invariant numbers and the quantum number of the group order n. All possible nanostructures of symmetry D _3d have been classified: C_{θ + 6z} , z = 0, 1, 2, ..., where the basic shells are C_θ = C₆, C₈, and C₁₄. A sum rule has been obtained for the coordination numbers of the shell sites located on symmetry axes. Trigonal nanoparticles are parent ones for obtaining (3,0), (6,0), and (9,0) nanotubes of trigonal type. The general formulas of these nanotubes with icosahedral, dodecahedral, and cubic caps are N_{8 + 12p} , N_{20 + 24p} , and N_{60 + 36p} (p = 1, 2, ...), respectively. The graphical constructions of all classes of trigonal nanoparticles and nanotubes are reported.     

Stability of <Emphasis Type="Italic">s</Emphasis>-, <Emphasis Type="Italic">p</Emphasis>-, and <Emphasis Type="Italic">d</Emphasis>-element diphosphates in water

The mean atomic Gibbs energies of formation of (Δ _f ? _at ⁰ ) of s-, p-, and d-element diphosphates have been calculated using ion increments of the Gibbs energy (Δ _f G ⁰). The diphosphate hydrolysis kinetics is considered, and a correlation between the Δ _f ? _at ⁰ values and the hydrolysis rate constants is presented.     

Synthesis of oxo derivatives of <Emphasis Type="Italic">N</Emphasis>-(<Emphasis Type="Italic">p</Emphasis>-tolysulfonyl)hexahydrocycloalka[<Emphasis Type="Italic">b</Emphasis>]indoles

Hydroxymercuration-demercuration of N-p-tolysulfonyl-4,4a,9,9a-tetrahydro-3H-carbazoles and N-p-tolyl(or methyl)sulfonyl-1,3a,4,8b-tetrahydrocyclopenta[b]indoles leads to the formation of the corresponding N-p-tolylsulfonyl-2,3,4,4a,9,9a-hexahydro-1H-carbazol-2-ols and N-p-tolyl(or methyl)sulfonyl-1,2,3,3a,4,8b-hexahydrocyclopenta[b]indol-2-ols. The latter are oxidized to 2-oxo derivatives with potassium dichromate. The oxidation of 2-methoxy-8-methyl-N-p-tolylsulfonyl-2,3,4,4a,9,9a-hexahydro-1H-carbazol-1-ol under analogous conditions gives 2-methoxy-8-methyl-N-p-tolysulfonyl-2,3,4,4a,9,9a-hexahydro-1H-carbazol-1-one.     

Synthesis of amino acid conjugates of glycyrrhizic acid using <Emphasis Type="Italic">N</Emphasis>-hydroxyphthalimide and <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>'-dicyclohexylcarbodiimide

Synthesis of amino acid conjugates of glycyrrhizic acid with the use of N-hydroxyphthalimide, N,N'-dicyclohexylcarbodiimide, and tert-butyl esters of L-amino acids (valine, isoleucine, phenylalanine, and methionine) was performed followed by deprotection with trifluoroacetic acid. The target amino acid conjugates were isolated by column chromatography on silica gel in 40–45% yield. The structure of the prepared compounds was confirmed by IR and ¹³C NMR spectroscopy.     

Viscosities and Surface Tensions of Phenetole with <Emphasis Type="Italic">N</Emphasis>-Methyl-2-pyrrolidone, <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-Dimethylformamide and Tetrahydrofuran Binary Systems at Three Temperatures

Viscosities, η, and surface tensions, σ, of binary systems of phenetole (ethoxy benzene or ethyl phenyl ether) with N-methyl-2-pyrrolidone, N,N-dimethylformamide or with tetrahydrofuran were measured over the entire mole fraction range and at (298, 303 and 308) K. The experimental data was used to compute the deviations in viscosity, Δη, and surface tension, Δσ. Values of the excess Gibbs energy of activation G*^E, surface entropy S _σ and surface enthalpy H _σ were calculated. Viscosity data of the binary systems were calculated using the Grunberg and Nissan and the three-body and four-body McAllister correlations. The Redlich–Kister method was used for evaluation of coefficients and standard deviations for Δη, Δσ and G*^E. The results were interpreted in terms of the probable effect of molecular interactions between components as well as polarity.     

Brazilian <Emphasis Type="Italic">Dioscoreaceas</Emphasis> starches

Determination of the characteristics of native starches is crucial in order to select their best application in various industrial fields. Thus, two different types of non-traditional native starches from the Dioscoreaceas species (Dioscorea sp. and Dioscorea piperifolia Humb. var. Wild) were studied regarding their thermal, structural and rheological properties. The results were contrasted with traditional commercial starch sources (potato, cassava and corn). From the thermogravimetric results (TG/DTG), D. piperifolia starch obtained the highest thermal stability of the samples, except for potato starch. Furthermore, using differential scanning calorimetry and viscoamylograph profiles (RVA), it was found that the Dioscoreaceas starches presented a higher onset (T _o) temperature and susceptibility to retrogradation. They also showed lower values in relation to relative crystallinity, which was calculated from their X-ray patterns and tendency to white (L*) colour. The shapes of the Discoreaceas starch granules were determined using electron microscopy; it was found that as the potato starch the Dioscoreaceas starches showed a wide range of particle size.     

Synthesis of <Emphasis Type="Italic">ortho</Emphasis>-carboranyl derivatives of (<Emphasis Type="Italic">S</Emphasis>)-asparagine and (<Emphasis Type="Italic">S</Emphasis>)-glutamine

(S)-Asparagine and (S)-glutamine ortho-carboranyl derivatives with free amino and carboxy groups in the α-position were synthesized. By an example of N ^γ-(1,2-dicarba-closo-dodecarboran-3-yl)-(S)-glutamine it was demonstrated that the developed synthetic approach carboranyl derivatives of amino acids allowed the preparation of optically pure isomers.     

Synthesis and structure of Pt(II) acetamidate complexes containing <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis>-dimethyl-substituted ethylenediamine and trimethylenediamine

Reactions of acetamide with platinum(II) diamines [Pt(N,N-DimeEn)Cl₂], [Pt(Tm)Cl₂], and [Pt(N,N-DimeTm)Cl₂] (N,N-DimeEn = (CH₃)₂N(CH₂)₂NH₂, Tm = NH₂(CH₂)₃NH₂, N,N-DimeTm = (CH₃)₂N(CH₂)₃NH₂) with preliminary precipitation of chlorine ions by silver salts gave binuclear Pt(II) acetamidates [Pt₂(CH₃)₂N(CH₂)₂NH₂)₂(μ-NHCOCH₃)₂](NO₃)₂ · H₂O (I), [Pt₂(NH₂(CH₂)₃NH₂)₂)(μ-NHCOCH₃)₂](NO₃)₂ · H₂O (II), and [Pt₂(CH₃)₂N(CH₂)₃NH₂)₂(μ-NHCOCH₃)₂](HSO₄)₂ (III), whose crystal structures were determined. Crystals of I are monoclinic: a = 14.459(2) Å, b = 17.197(3) Å, c = 9.822(2) Å, β = 105.923(10)°, V = 3348.6(8) ų, space group P2(1)/c, Z = 4, R _hkl = 0.0419 for 6663 reflections. Complex I is a binuclear acetamidate with bridging (NHCOCH₃)^? ligands, one of which is bound to two Pt atoms through the N and O atoms, and the other ligand is bound only through the N atom. The Pt-Pt distance is 2.987(1) Å. Crystals of II are monoclinic: a = 10.213(7) Å, b = 13.373(9) Å, c = 16.533(11) Å, β = 97.971(9)°, V = 2236(3) ų, space group P2(1)/n, Z = 4, R _hkl = 0.557 for 6462 reflections. The Pt-Pt distance is 3.057(1) Å. Crystals of III are monoclinic: a = 10.557(12) Å, b = 18.531(2) Å, c = 14.4744(17) Å, β = 108.705(2)°, V = 2682(5) ų, space group P2(1)/n, Z = 4, R _hkl = 0.569 for 8506 reflections. The Pt-Pt distance is 3.202(1) Å. Complexes II and III are binuclear acetamidates, in which two chelating Pt(Tm) or Pt(N,N-DimeTm) moieties are coordinated through the N and O atoms of (NHCOCH₃)^? cis-bridges.     

Research on the Solid State Fermentation of Jerusalem Artichoke Pomace for Producing <Emphasis Type="Italic">R</Emphasis>,<Emphasis Type="Italic">R</Emphasis>-2,3-Butanediol by <Emphasis Type="Italic">Paenibacillus polymyxa</Emphasis> ZJ-9

R,R-2,3-butanediol (R,R-2,3-BD) was produced by Paenibacillus polymyxa ZJ-9, which was capable of utilizing inulin without previous hydrolysis. The Jerusalem artichoke pomace (JAP) derived from the conversion of Jerusalem artichoke powder into inulin extract, which was usually used for biorefinery by submerged fermentation (SMF), was utilized in solid state fermentation (SSF) to produce R,R-2,3-BD. In this study, the fermentation parameters of SSF were optimized and determined in flasks. A novel bioreactor was designed and assembled for the laboratory scale-up of SSF, with a maximum yield of R,R-2,3-BD (67.90 g/kg (JAP)). This result is a 36.3% improvement compared with the flasks. Based on the same bath of Jerusalem artichoke powder, the total output of R,R-2,3-BD increased by 38.8% for the SSF of JAP combined with the SMF of inulin extraction. Overall, the utilization of JAP for R,R-2,3-BD production was beneficial to the comprehensive utilization of Jerusalem artichoke tuber.     

Compositions and structures of nanoparticles of pentagonal axial symmetry <Emphasis Type="Italic">D</Emphasis><Subscript>5<Emphasis Type="Italic">d</Emphasis></Subscript>: Nanotubes

The method of determination of the structure and the number of atoms in the shells of nanoparticles as a function of the arrangement of atoms at the symmetry elements of a symmetry group has been developed. The formulas for the calculation of the number of particles with symmetry group D _5d are reported. The number of particles in these shells is determined by three structurally invariant numbers and the “quantum number” of the group order n. The classification of all possible nanostructures with symmetry group D _5d is given: C _θ+10z , z = 0, 1, 2, …, where the basic shells are C _θ = C ₂, C ₁₀, C ₁₂. The sum rule has been obtained for the coordination numbers of shell sites located at symmetry axes. Pentagonal axial nanoparticles are shown to be the initial shells for obtaining (5,5) and (10,10) armchair nanotubes or (5,0) and (10,0) zigzag nanotubes. The general formula of these nanotubes closed with icosahedral and dodecahedral caps is N _20+10p , N _60+10p (p = 1, 2, …). The graphical constructions of all classes of nanoparticles and nanotubes of the pentagonal axial type are reported.     

<Emphasis Type="Italic">O</Emphasis>-vinylacetoxime as a hydrogen bond acceptor

According to quantum chemical calculations (B3LYP/6-311G*) and IR spectroscopy the basicity of oxygen atom of O-vinylacetoxime is substantially lower than that of O-ethylacetoxime and is comparable to the basicity of phenyl vinyl and diphenyl ethers. In CCl₄ solution, O-vinylacetoxime gives H-complexes wit methanol by formation of N···HO bonds. With phenol and trifluoroacetic acid under these conditions it enters in the reaction of electrophilic addition. O-Ethylacetoxime in inert media forms with methanol and phenol two types of H-complexes with the N···HO or O···HO bonds.     

Effect of the structure of the <Emphasis Type="Italic">ortho</Emphasis>, <Emphasis Type="Italic">meta</Emphasis>, and <Emphasis Type="Italic">para</Emphasis> isomers of perhydroterphenyl on their reactivity in heterogeneous catalytic dehydrogenation

The kinetics of the dehydrogenation of the individual ortho, meta, and para isomers of perhydroterphenyl and their mixtures over a (3 wt % Pt)/C catalyst has been investigated in a flow reactor at 280–340°C. The rate of the isomerization of the stereoisomers of the initial substrate (perhydroterphenyl) and terphenyl dehydrogenation products has an effect on the hydrogen release kinetics. The highest reactivity in isomerization is shown by the ortho isomer. The largest amount of hydrogen (7.0 wt %) is released in the dehy-drogenation of perhydro-meta-terphenyl and perhydro-para-terphenyl, whose conversion at 320°C is 96%.