Biased Borate Esterification during Nucleoside Phosphorylase-Catalyzed Reactions: Apparent Equilibrium Shifts and Kinetic Implications**

Biocatalytic nucleoside (trans-)glycosylations catalyzed by nucleoside phosphorylases have evolved into a practical and convenient approach to the preparation of modified nucleosides, which are important pharmaceuticals for the treatment of various cancers and viral infections. However, the obtained yields in these reactions are generally determined exclusively by the innate thermodynamic properties of the nucleosides involved, hampering the biocatalytic access to many sought-after target nucleosides. We herein report an additional means for reaction engineering of these systems. We show how apparent equilibrium shifts in phosphorolysis and glycosylation reactions can be effected through entropically driven, biased esterification of nucleosides and ribosyl phosphates with inorganic borate. Our multifaceted analysis further describes the kinetic implications of this in situ reactant esterification for a model phosphorylase.     

Kinetic Study of the Hydrolysis of BNPP by the Cerium(III) Complex

5,5,7,12,12,14-Hexamethyl-1,4,8,11-tetraazacyclotetradecane (L) was synthesized and characterized. The kinetics of hydrolysis of bis(p-nitrophenyl)phosphate (BNPP) in the catalytic system containing macrocyclic ligand and cerium(III) was investigated. This catalytic system show high catalytic activity and better reproducibility and stability than other similar systems in the range of pH of around 5.6–7.2. The stoichiometry and spectral analysis showed that the real active species is the macrocyclic complex of cerium(III). Based on the analytical results of the specific absorption spectra, an intramolecular nucleophilic substitution mechanism for the catalytic hydrolysis of BNPP is proposed, a correlative kinetic mathematical model is established, and the corresponding thermodynamic and kinetic constants are calculated.     

Ultrastrong Regulation Effect of the Electric Field on the All-Carboatomic Ring Cyclo[18]Carbon**

Cyclo[18]carbon has a very unique geometry and electronic structure. We found that an external electric field (EEF) has an ultrastrong regulation effect on various aspects of the cyclo[18]carbon: (1) The EEF makes the shape of the cyclo[18]carbon change from a circle to an oval, the elongation is particularly striking at a large EEF magnitude. (2) The EEF causes a huge polarization of distribution of in-plane π electrons, and strong EEF can even make some of the electrons detached from the carbon ring (3) EEF significantly lowers LUMO energy and reduces HOMO-LUMO gap (4) Large EEF leads to absorption band in the visible light range and thus makes the cyclo[18]carbon display color (5) Strong EEF causes a large number of new absorption peaks in IR spectrum. We also carefully analyzed how EEF deforms structure of the cyclo[18]carbon from the perspective of atomic forces and decomposition of energy variation, and the reason why the in-plane π electrons are much more polarizable by EEF than the out-of-plane π electrons is discussed. Moreover, we demonstrated that it is feasible to equivalently apply a strong EEF on the cyclo[18]carbon via a purely chemical and thus a more easily achieve way, namely introducing divalent alkaline earth metal cation.     

Ex‐Situ Kinetic Investigations of the Formation of the Poly‐Oxo Cluster U38

The ex‐situ qualitative study of the kinetic formation of the poly‐oxo cluster U₃₈, has been investigated after the solvothermal reaction. The resulting products have been characterized by means of powder XRD and scanning electron microscopy (SEM) for the solid phase and UV/Vis, X‐ray absorption near edge structure (XANES), extended X‐ray absorption fine structure (EXAFS), and NMR spectroscopies for the supernatant liquid phase. The analysis of the different synthesis batches, stopped at different reaction times, revealed the formation of spherical crystallites of UO₂ from t=3 h, after the formation of unknown solid phases at an early stage. The crystallization of U₃₈ occurred from t=4 h at the expense of UO₂, and is completed after t=8 h. Starting from pure uranium(IV) species in solution (t=0–1 h), oxidation reactions are observed with a U^IV/U^VI ratio of 70:30 for t=1–3 h. Then, the ratio is inversed with a U^IV/U^VI ratio of 25/75, when the precipitation of UO₂ occurs. Thorough SEM observations of the U₃₈ crystallites showed that the UO₂ aggregates are embedded within. This may indicate that UO₂ acts as reservoir of uranium(IV), for the formation of U₃₈, stabilized by benzoate and THF ligands. During the early stages of the U₃₈ crystallization, a transient crystallized phase appeared at t=4 h. Its crystal structure revealed a new dodecanuclear moiety (U₁₂), based on the inner hexanuclear core of {U₆O₈} type, decorated by three additional pairs of dinuclear U₂ units. The U₁₂ motif is stabilized by benzoate, oxalates, and glycolate ligands.     

Automation of the Batch Method for Reaction Kinetic Studies Using Flow Injection Analysis. Kinetic Study of Hydrolysis Of N4-Acetylsulfanilamide,Acetylsalicylic Acid and Phenyl Phosphate

Abstract

The automation of the discontinuous (batch) method for kinetic stucfies using flow-injection analysis (FIA) is described. Aliquots of the reaction mixture are automatically injected in an appropriate manifold and the kinetic profile of the reaction is obtained as a series of absorbance peaks. Observed reaction rate constants are calculated using the Guggenheim and non-linear fitting approaches. The new method is evaluated in the kinetic study of the acid hydrolysis of N⁴-acetylsulfanilamide by colorimetric monitoring of sulfanilamide, the alkaline hydrolysis of acetylsalicylic acid (aspirin) by colorimetric monitoring of salicylate, and the enzymic hydrolysis of phenyl phosphate with alkaline phosphatase by colorimetric monitoring of phosphate. The automated flow-injection batch method can be used in kinetic studies of reactions with t_1/2 greater than 200 s.     

UV Resonance Raman Spectroscopic Identification of Titanium Atoms in the Framework of TS-1 Zeolite

Framework titanium atoms in titanium-substituted silicalite (TS-1) can be identified by UV resonance Raman spectroscopy since the associated Raman bands at 1125, 530, and 490 cm⁻¹ (see figure) are observed only when the charge transfer transition associated with the framework Ti atoms is excited by a UV laser. Thus, framework Ti atoms can be distinguished from nonframework Ti atoms and other defect sites. This method can be applicable to identifying transition metal atoms in the frameworks of other molecular sieves.     

Highly Effective Water Oxidation Catalysis with Iridium Complexes through the Use of NaIO4

Exceptional water oxidation (WO) turnover frequencies (TOF=17 000 h^?1), and turnover numbers (TONs) close to 400 000, the largest ever reported for a metal‐catalyzed WO reaction, have been found by using [Cp*Ir^III(NHC)Cl₂] (in which NHC=3‐methyl‐1‐(1‐phenylethyl)‐imidazoline‐2‐ylidene) as the pre‐catalyst and NaIO₄ as oxidant in water at 40 °C. The apparent TOF for [Cp*Ir^III(NHC)X₂] ( 1 X , in which X stands for I ( 1 I ), Cl ( 1 Cl ), or triflate anion ( 1 OTf )) and [(Cp*‐NHCMe)Ir^IIII₂] ( 2 ) complexes, is kept constant during almost all of the O₂ evolution reaction when using NaIO₄ as oxidant. The TOF was found to be dependent on the ligand and on the anion (TOF ranging from ≈600 to ≈1100 h^?1 at 25 °C). Degradation of the complexes by oxidation of the organic ligands upon reaction with NaIO₄ has been investigated. ¹H NMR, ESI‐MS, and dynamic light‐scattering measurements (DLS) of the reaction medium indicated that the complex undergoes rapid degradation, even at low equivalents of oxidant, but this process takes place without formation of nanoparticles. Remarkably, three‐month‐old solution samples of oxidized pre‐catalysts remain equally as active as freshly prepared solutions. A UV/Vis feature band at λ_max=405 nm is observed in catalytic reaction solutions only when O₂ evolves, which may be attributed to a resting state iridium speciation, most probably Ir–oxo species with an oxidation state higher than IV.     

Analysis of Coherent Heteroclustering of Different Dyes by Use of Threoninol Nucleotides for Comparison with the Molecular Exciton Theory

To test the molecular exciton theory for heterodimeric chromophores, various heterodimers and clusters, in which two different dyes were stacked alternately, were prepared by hybridizing two oligodeoxyribonucleotides (ODNs), each of which tethered a different dye on D ‐threoninol at the center of the strand. NMR analyses revealed that two different dyes from each strand were stacked antiparallel to each other in the duplex, and were located adjacent to the 5′‐side of a natural nucleobase. The spectroscopic behavior of these heterodimers was systematically examined as a function of the difference in the wavelength of the dye absorption maxima (Δλ_max). We found that the absorption spectrum of the heterodimer was significantly different from that of the simple sum of each monomeric dye in the single strand. When azobenzene and Methyl Red, which have λ_max at 336 and 480 nm, respectively, in the single strand (Δλ_max=144 nm), were assembled on ODNs, the band derived from azobenzene exhibited a small hyperchromism, whereas the band from Methyl Red showed hypochromism and both bands shifted to a longer wavelength (bathochromism). These hyper‐ and hypochromisms were further enhanced in a heterodimer derived from 4′‐methylthioazobenzene and Methyl Red, which had a much smaller Δλ_max (82 nm; λ_max=398 and 480 nm in the single‐strand, respectively). With a combination of 4′‐dimethylamino‐2‐nitroazobenzene and Methyl Red, which had an even smaller Δλ_max (33 nm), a single sharp absorption band that was apparently different from the sum of the single‐stranded spectra was observed. These changes in the intensity of the absorption band could be explained by the molecular exciton theory, which has been mainly applied to the spectral behavior of H‐ and/or J‐aggregates composed of homo dyes. However, the bathochromic band shifts observed at shorter wavelengths did not agree with the hypsochromism predicted by the theory. Thus, these data experimentally verify the molecular exciton theory of heterodimerization. This coherent coupling among the heterodimers could also partly explain the bathochromicity and hypochromicity that were observed when the dyes were intercalated into the duplex.     

The effect of water on the microstructure of 1-butyl-3-methylimidazolium tetrafluoroborate/TX-100/benzene ionic liquid microemulsions

The ionic liquid (IL) 1-butyl-3-methylimidazolium tetrafluoroborate ([bmim][BF4]) forms nonaqueous microemulsions with benzene with the aid of nonionic surfactant TX-100. The phase diagram of the ternary system was prepared, and the microstructures of the microemulsion were recognized. On the basis of the phase diagram, a series of ionic liquid-in-oil (IL/O) microemulsions were chosen and characterized by dynamic light scattering (DLS), which shows a similar swelling behavior to typical water-in-oil (W/O) microemulsions. The existence of IL pools in the IL/O microemulsion was confirmed by UV/Vis spectroscopic analysis with CoCl2 and methylene blue (MB) as the absorption probes. A constant polarity of the IL pool is observed, even if small amounts of water are added to the microemulsion, thus suggesting that the water molecules are solubilized in the polar outer shell of the microemulsion, as confirmed by FTIR spectra. 1H NMR spectroscopic analysis shows that these water molecules interact with the electronegative oxygen atoms of the oxyethylene (OE) units of TX-100 through hydrogen-bonding interactions, and the electronegative oxygen atoms of the water molecules attract the electropositive imidazolium rings of [bmim][BF4]. Hence, the water molecules are like a glue that stick the IL and OE units more tightly together and thus make the microemulsion system more stable. Considering the unique solubilization behavior of added water molecules, the IL/O microemulsion system may be used as a medium to prepare porous or hollow nanomaterials by hydrolysis reactions.     

Nonlinear Analysis of the Kinetics and Equilibrium for Adsorptive Removal of Cd(II) by Starch Phosphate

In the present study, the nonlinear analysis method was used to evaluate the kinetics and equilibrium for Cd(II) adsorption on crosslinked starch phosphate (SP) from aqueous solution. The pseudo-first-order, pseudo-second-order and Elovich kinetic models were applied to test the kinetics experimental data, and the pseudo-first-order kinetic model provides a best correlation of the experimental data. Adsorption equilibrium data were fit by Langmuir, Freundlich, Dubinin-Radushkevich, and Sips isotherms. The results show that the data are best described by the Sips isotherms with a maximum adsorption capacity of 2.00 mmol/g. The effects of initial pH, and SP dose on the Cd(II) adsorption were also investigated. The adsorption capacities of Cd(II) on SP increase with the pH increasing from 2.0 to 8.0.     

Oxidative electrochemical switching in dithienylcyclopentenes, part 1: effect of electronic perturbation on the efficiency and direction of molecular switching

The electro- and spectroelectrochemical properties of dithienylhexahydro- and dithienyhexafluorocyclopentenes are reported. The large effect of variation in the central cyclopentene moieties on the redox properties of the dithienylcyclopentenes is in striking contrast to the minor effect on their photochemical properties. The electronic properties of the oxidised compounds in the +1 and +2 oxidation state are reported, and the possibility of electrochemical cyclisation and cycloreversion were explored by UV/Vis spectroelectrochemistry. The efficiency of electrochemical switching is found to be dependent both on the central cyclopentene unit and on the nature of the substituents at C5 of the thienyl rings. For the hexahydrocyclopentene-based compounds oxidative ring closure of the ring-open form is observed, while for the hexafluorocyclopentene-based compounds oxidative ring opening of the ring-closed form is observed. However, the introduction of electroactive groups such as methoxyphenyl allows oxidative ring closure to occur in the hexafluoro compounds. The effect of electrolyte, solvent and temperature on the spectroelectrochemical properties were examined, and the switching process was found to be sensitive to the donor properties of the solvent/electrolyte system employed. In addition, thermally activated reversible isomerisation of the dicationic closed form was observed. The driving force for electrochemical ring opening and closure appears to be dependent on the relative stabilisation of the dicationic ring-open and ring-closed states. This study provides insight into the factors which determine the direction of cyclisation.     

Proton/Hydrogen‐Transfer Coordinate of 2,5‐Dihydroxybenzoic Acid Investigated in a Supersonic Beam: Combined IR/UV Spectroscopy in the S0, S1, and D0 States

As a model system for intramolecular proton/hydrogen‐transfer coordinates, the structure of 2,5‐dihydroxybenzoic acid is investigated for the ground, first electronically excited and also the ionic state. Combined IR/UV spectroscopy in molecular‐beam experiments is applied and the experimental results are interpreted by the application of DFT and CASPT2 methods. No proton or hydrogen transfer is observed, but evidence is given for a hydrogen dislocation of the intramolecular hydrogen bond in the S₁ state and to lesser extent in the D₀ state. To obtain direct information on the proton/hydrogen‐transfer coordinate, IR spectra are recorded both in the region of the OH and especially the CO stretching vibrations by also applying two new variants of combined IR/UV spectroscopy for the S₁ and D₀ states. The CO groups are directly involved in the hydrogen bond and, in contrast to the hydrogen‐bonded OH groups, the CO stretching frequencies can be observed in all electronic states.     

Electrochemical and Spectroscopic Study of EuIII and EuII Coordination in the 1-Ethyl-3-methylimidazolium Bis(trifluoromethylsulfonyl)imide Ionic Liquid

Separation processes based on room temperature ionic liquids (RTIL) and electrochemical refining are promising strategies for the recovery of lanthanides from primary ores and electronic waste. However, they require the speciation of dissolved elements to be known with accuracy. In the present study, Eu coordination and Eu^III/Eu^II electrochemical behavior as a function of water content in 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide ([EMIm][NTf₂]) was investigated using UV–visible spectrophotometry, time-resolved laser fluorescence spectroscopy, electrochemistry, and X-ray absorption spectroscopy. In situ measurements were performed in spectroelectrochemical cells. Under anhydrous conditions, Eu^III and Eu^II were complexed by NTf₂, forming Eu−O and Eu−(N,O) bonds with the anion sulfoxide function and N atoms, respectively. This complexation resulted in a greater stability of Eu^II, and in quasi-reversible oxidation–reduction with an E₀’ potential of 0.18 V versus the ferrocenium/ferrocene (Fc⁺/Fc) couple. Upon increasing water content, progressive incorporation of water in the Eu^III coordination sphere occurred. This led to reversible oxidation–reduction reactions, but also to a decrease in stability of the +II oxidation state (E₀’=−0.45 V vs. Fc⁺/Fc in RTIL containing 1300 mm water).     

Computational Prediction of 1H and 13C NMR Chemical Shifts for Protonated Alkylpyrroles: Electron Correlation and Not Solvation is the Salvation

Prediction of chemical shifts in organic cations is known to be a challenge. In this article we meet this challenge for α-protonated alkylpyrroles, a class of compounds not yet studied in this context, and present a combined experimental and theoretical study of the ¹³C and ¹H chemical shifts in three selected pyrroles. We have investigated the importance of the solvation model, basis set, and quantum chemical method with the goal of developing a simple computational protocol, which allows prediction of ¹³C and ¹H chemical shifts with sufficient accuracy for identifying such compounds in mixtures. We find that density functional theory with the B3LYP functional is not sufficient for reproducing all ¹³C chemical shifts, whereas already the simplest correlated wave function model, Møller–Plesset perturbation theory (MP2), leads to almost perfect agreement with the experimental data. Treatment of solvent effects generally improves the agreement with experiment to some extent and can in most cases be accomplished by a simple polarizable continuum model. The only exception is the NH proton, which requires inclusion of explicit solvent molecules in the calculation.     

Exciton <Emphasis Type="Italic">Cotton</Emphasis> Effects of Benzoates in the <Superscript>1</Superscript>B Transition Region. Demonstration and Applications

Summary. The benzoate ¹B region exciton Cotton effects, hitherto unexplored, were analyzed for their use in stereochemical assignments in both acyclic (conformationally flexible) and cyclic molecules. It was found that a strong, allowed ¹B_a transition, polarized longitudinally, dominates the ¹B region (185–210nm) both in the UV and the CD spectra. The exciton Cotton effects due to this transition have the same sign (but differing magnitude) as those due to the ¹L_a (CT) band. The other component of the nearly degenerate ¹B system, i.e. ¹B_b transition, polarized orthogonally to the ¹B_a transition, gives a Cotton effect in the case of di- and poly(4-chlorobenzoate) chromophoric system, the sign of which is sensitive to the configuration of di- or polyol. In rigid 5-steroid skeleton ¹B_b transition couplings appear responsible for strong exciton Cotton effects due to nearly parallelly oriented benzoate chromophores. Whereas ¹B_a transition excitation energy appears insensitive to the nature of a substituent in 4-position of the benzoate chromophore, substitution with a donor group (methoxy, dimethylamino) brings about a red shift of the ¹B_b band, although less pronounced than the red shift of the ¹L_a (CT) band.     

Metal Nanoparticle‐Catalyzed Reduction Using Borohydride in Aqueous Media: A Kinetic Analysis of the Surface Reaction by Microfluidic SERS

Hydrides are widely used in reduction reactions. In protic solvents, their hydrolysis generates molecular hydrogen as a second reducing agent. The competition between these two parallel reduction pathways has been overlooked so far since both typically yield the same product. We investigated the platinum‐catalyzed reduction of 4‐nitrothiophenol to 4‐aminothiophenol in aqueous sodium borohydride solution as a prominent model reaction, by using label‐free SERS monitoring in a microfluidic reactor. Kinetic analysis revealed a strong pH dependence. Surprisingly, only at pH>13 the reduction is driven exclusively by sodium borohydride. This study demonstrates the potential of microfluidics‐based kinetic SERS monitoring of heterogeneous catalysis in colloidal suspension.     

Deformed phthalocyanines: synthesis and characterization of zinc phthalocyanines bearing phenyl substituents at the 1-, 4-, 8-, 11-, 15-, 18-, 22-, and/or 25-positions

The synthesis of a series of zinc phthalocyanines partially phenyl-substituted at the 1-, 4-, 8-, 11-, 15-, 18-, 22-, and/or 25-positions (the so-called alpha-positions) is reported. Macrocycle formation based on 3,6-diphenylphthalonitrile, o-phthalonitrile, and zinc acetate predominantly yielded the near-planar disubstituted complex and opposite tetrasubstituted isomer, while the lithium method yielded the sterically hindered hexasubstituted complex and adjacent tetrasubstituted isomer. All compounds have been characterized by 1H NMR, MALDI-TOF-MS, and elemental analysis methods. In addition, crystal structures have been solved for the di-, hexa-, and octasubstituted complexes and the adjacent tetrasubstituted isomer. DFT geometry optimization calculations predict more highly deformed structures than those observed in the crystals. The packing force of the crystals cannot therefore be ignored, particularly for the less phenyl-substituted derivatives. The crystal structures have revealed that overlap of the phenyl groups causes substantial deformation of the phthalocyanine (Pc) ligands within the crystals, while strong pi-pi stacking in the remainder of the Pc moiety lacking phenyl substituents can suppress the impact of the deformation. Absorption spectra show sizable red shifts of the Q-band with increasing number of phenyl groups. Analysis of the results of absorption spectra and electrochemical measurements reveals that a substantial portion of the red shift is attributable to the ring deformations. Molecular orbital calculations lend further support to this conclusion. A moderately intense absorption band emerging at around 430 nm for highly deformed octaphenyl-substituted zinc Pc can be assigned to the HOMO-->LUMO+3 transition, which is parity-forbidden for planar Pcs, but becomes allowed since the ring deformations remove the center of symmetry.