Formation and decay of localized contact radical ion pairs in DNA hairpins

The dynamics of charge separation and charge recombination in synthetic DNA hairpins possessing diphenylacetylene-4,4'-dicarboxamide linkers have been investigated by means of femtosecond time-resolved transient absorption spectroscopy. The lowest excited singlet state of the linker is capable of oxidizing nearest neighbor adenine as well as guanine. A large wavelength shift in the transient absorption spectrum accompanies the conversion of the singlet linker to its anion radical, facilitating the investigation of electron-transfer dynamics. The rate constants for charge separation are dependent upon the oxidation potentials of the neighboring nucleobase donors but not upon the identity of nonnearest neighbors. Thus, the charge separation processes yield a contact radical ion pair in which the positive charge is localized on the neighboring nucleobase. Rate constants for charge recombination are dependent upon the identity of the first and second nearest-neighbor nucleobases but not more remote bases. This dependence is attributed to stabilization of the contact radical ion pair by interaction with its nearest neighbor. The absence of charge migration to form a base-pair separated radical ion pair is a consequence of Coulombic attraction in the contact radical ion pair and the low effective dielectric constant (epsilon < 7) experienced by the contact radical ion pair. Photoinduced charge injection to form a base-pair separated radical ion pair is necessary in order to observe charge migration.     

Further evidence of an inverted region in proton transfer within the benzophenone/substituted aniline contact radical ion pairs; importance of vibrational reorganization energy

The dynamics of proton transfer within the triplet contact radical ion pair of a variety of substituted benzophenones with N,N-diethylaniline, N,N-dimethyl-p-toluinide, and N,N-diallylaniline are examined in solvents of varying polarity. The correlation of the rate constants with driving force reveal both a normal region and an inverted region providing support for the nonadiabatic nature of proton transfer within these systems. The reorganization of both the solvent and the molecular framework are central in governing the overall reaction dynamics.     

Bonded exciplexes. A new concept in photochemical reactions

Charge-transfer quenching of the singlet excited states of cyanoaromatic electron acceptors by pyridine is characterized by a driving force dependence that resembles those of conventional electron-transfer reactions, except that a plot of the log of the quenching rate constants versus the free energy of electron transfer is displaced toward the endothermic region by 0.5-0.8 eV. Specifically, the reactions with pyridine display rapid quenching when conventional electron transfer is highly endothermic. As an example, the rate constant for quenching of the excited dicyanoanthracene is 3.5 x 10(9) M(-1)s(-1), even though formation of a conventional radical ion pair, A*-D*+, is endothermic by approximately 0.6 eV. No long-lived radical ions or exciplex intermediates can be detected on the picosecond to microsecond time scale. Instead, the reactions are proposed to proceed via formation of a previously undescribed, short-lived charge-transfer intermediate we call a "bonded exciplex", A- -D+. The bonded exciplex can be formally thought of as resulting from bond formation between the unpaired electrons of the radical ions A*- and D*+. The covalent bonding interaction significantly lowers the energy of the charge-transfer state. As a result of this interaction, the energy decreases with decreasing separation distance, and near van der Waals contact, the A- -D+ bonded state mixes with the repulsive excited state of the acceptor, allowing efficient reaction to form A- -D+ even when formation of a radical ion pair A*-D*+ is thermodynamically forbidden. Evidence for the bonded exciplex intermediate comes from studies of steric and Coulombic effects on the quenching rate constants and from extensive DFT computations that clearly show a curve crossing between the ground state and the low-energy bonded exciplex state.     

Studies on reactivity of benzoyl and benzoylperoxy radicals produced by laser flash photolysis of dibenzoyldiazene in aerated solutions

Photolysis of dibenzoyldiazene gives benzoyl radicals. In aerated solutions, the benzoyl radicals react with oxygen to yield benzoylperoxy radicals. Spin trapping studies indicate that 5,5′dimethyl-1-pyrroline N-oxide reacts with the benzoylperoxy radicals to produce the adduct which exhibits ESR parameters, A_N = 13.8 G and A_Hβ = 10.1 G. Laser photolysis studies reveal that the rate constants for the reaction between the benzoyl radical and oxygen are ca. 4 × 10⁹ M^-1 s^-1 in toluene, acetone, and ethyl acetate. The benzoylperoxy radicals undergo one-electron oxidation of tetramethyl-p-phenylenediamine, TMPD, to give an ion pair. The ion pair has an absorption spectrum similar to that of the TMPD cation radical. The formation of the ion pair is detected by monitoring the absorbance change at 600 nm after laser pulsing. From the kinetic studies for the formation of the ion pair in the presence of olefins, the bimolecular rate constants for reactions between several olefins and the benzoylperoxy radical are determined. The electrophilic addition of the benzoylperoxy radicals to olefins is discussed in comparison with the addition reactions of thiyl radicals to olefins. The detection and determination of the dipole moments of both the benzoylperoxy radicals and the ion pair are carried out with the use of the time-resolved microwave dielectric absorption technique. The distance between the positive and negative ions in the ion pair is estimated as 0.20 nm.     

Picosecond kinetic study of the photoinduced homolysis of benzhydryl acetates: the nature of the conversion of radical pairs into ion pairs

The conversion of benzhydryl acetate geminate radical pairs to contact ion pairs following photoinduced homolysis in solution is studied using picosecond pump-probe spectroscopy. The dynamics for the decay of the geminate radical pairs into contact ion pairs is modeled within a Marcus-like theory for nonadiabatic electron transfer. A second decay channel for the geminate radical pairs is diffusional separation to free radicals. The kinetics of this latter process reveals an energy of interaction between the two radicals in the geminate pair.     

分子光化学贮存太阳能 Ⅲ.双环[2,2,1]-2,5-庚二烯的光诱导电子转移敏化异构化反应

以N,N,N′,N′-四甲基联苯二胺、2,6-二甲氧基萘和2,7-二甲氧基萘为光敏剂,在正己烷溶液中实现了双环[2,2,1]-2,5-庚二烯到四环[2,2,1,0^2,6,0^3,5]庚烷的异构化。测定了反应的量子产率。讨论了反应机理。通过激发态的光敏剂与二烯之间的电子转移反应,形成单重态和三重态处于平衡状态的离子自由基对中间体。处于溶剂笼中的三重态离子自由基对经电子反传,产生激发三重态二烯。最后该激发态二烯经分子内[2+2]环合加成反应异构化为四环烷。     

Rate constants for reactions of alkyl radicals with water and methanol complexes of triethylborane

Reactions of secondary alkyl radicals with triethylborane and several of its complexes were studied. The H-atom transfer reactions from Et3B-OH2 and Et3B-OD2 were suppressed by addition of pyridine to the reaction mixture. Rate constants for reactions of secondary alkyl radicals with triethylborane and its complexes with water, deuterium oxide, methanol, and THF at ambient temperature were determined by radical clock methods. Cyclization of the 1-undecyl-5-hexenyl radical and ring opening of the 1-cyclobutyldodecyl radical were evaluated as clock reactions. The cyclobutylcarbinyl radical ring opening had the appropriate velocity for relatively precise determinations of the ratios of rate constants for H-atom transfer trapping and rearrangement, and these ratios combined with an estimated rate constant for the cyclobutylcarbinyl radical ring opening gave absolute values for the rate constants for the H-atom transfer reactions. For example, the triethylborane-water complex reacts with a secondary alkyl radical in benzene at 20 degrees C with a rate constant of 2 x 10(4) M(-1) s(-1). Variable temperature studies with the Et3B-CH3OH complex in toluene indicate that the hydrogen atom transfer reaction has unusually high entropic demand, which results in substantially more efficient hydrogen atom transfer trapping reactions in competition with radical ring opening and cyclization reactions at reduced temperatures.     

Magnetic field effects on the triplet exciplex dynamics in the duroquinone-N,N-dimethylaniline derivative systems

Magnetic field effects (MFEs) on the radical yield in the photoinduced electron transfer reaction from the p-halogen derivatives (4XDMA) of N,N-dimethylaniline to the excited triplet state of duroquinone (DQ) have been investigated in alcoholic solutions at room temperature. In 1-propanol and 1-butanol solutions, the radical yields decreased as the magnetic field increased and became nearly constant at 1-1.8 T in the DQ-4BrDMA and DQ-4IDMA systems, suggesting that the spin-orbit coupling interaction due to the heavy atoms governs the radical yield. On the other hand, in the methanol solution MFE due to a radical pair mechanism was observed. We concluded that the key intermediate to determine the radical yield is the triplet exciplex or contact radical ion pair in the 1-propanol and 1-butanol solutions, while it is the solvent-separated radical ion pair in the methanol solution.     

Direct detection of ion pair formation and collapse in a migration reaction of a beta-phosphate radical

In solutions of trifluorotoluene or toluene containing 2,2,2-trifluoroethanol, the beta-phosphate radical heterolyzed to give a detectable ion pair, identified as a solvent-separated species. Rate constants for the radical fragmentation reaction forming the ion pair, for ion pair collapse, and for diffusive escape to free ions were measured. The kinetics and entropy of activation for fragmentation indicate that the rearrangement reaction occurs by a heterolysis pathway in all solvents. [reaction: see text]     

Rate constants for 1,5- and 1,6-hydrogen atom transfer reactions of mono-, di-, and tri-aryl-substituted donors, models for hydrogen atom transfers in polyunsaturated fatty acid radicals

Rate constants for 1,5- and 1,6-hydrogen atom transfer reactions in models of polyunsaturated fatty acid radicals were measured via laser flash photolysis methods. Photolyses of PTOC (pyridine-2-thioneoxycarbonyl) ester derivatives of carboxylic acids gave primary alkyl radicals that reacted by 1,5-hydrogen transfer from mono-, di-, and tri-aryl-substituted positions or 1,6-hydrogen transfer from di- and tri-aryl-substituted positions to give UV-detectable products. Rate constants for reactions in acetonitrile at room temperature ranged from 1 x 10(4) to 4 x 10(6) s(-1). The activation energies for a matched pair of 1,5- and 1,6-hydrogen atom transfers giving tri-aryl-substituted radicals were approximately equal, as were the primary kinetic isotope effects, but the 1,5-hydrogen atom transfer reaction was 1 order of magnitude faster at room temperature than the 1,6-hydrogen atom transfer reaction due to a less favorable entropy of activation for the 1,6-transfer reaction. Solvent effects on the rate constants for the 1,5-hydrogen atom transfer reaction of the 2-[2-(diphenylmethyl)phenyl]ethyl radical at ambient temperature were as large as a factor of 2 with the reaction increasing in rate in lower polarity solvents. Hybrid density functional theory computations for the 1,5- and 1,6-hydrogen atom transfers of the tri-aryl-substituted donors were in qualitative agreement with the experimental results.     

Intermolecular electron-transfer mechanisms via quantitative structures and ion-pair equilibria for self-exchange of anionic (dinitrobenzenide) donors

Definitive X-ray structures of "separated" versus "contact" ion pairs, together with their spectral (UV-NIR, ESR) characterizations, provide the quantitative basis for evaluating the complex equilibria and intrinsic (self-exchange) electron-transfer rates for the potassium salts of p-dinitrobenzene radical anion (DNB(-)). Three principal types of ion pairs, K(L)(+)DNB(-), are designated as Classes S, M, and C via the specific ligation of K(+) with different macrocyclic polyether ligands (L). For Class S, the self-exchange rate constant for the separated ion pair (SIP) is essentially the same as that of the "free" anion, and we conclude that dinitrobenzenide reactivity is unaffected when the interionic distance in the separated ion pair is r(SIP) > or =6 Angstroms. For Class M, the dynamic equilibrium between the contact ion pair (with r(CIP) = 2.7 Angstroms) and its separated ion pair is quantitatively evaluated, and the rather minor fraction of SIP is nonetheless the principal contributor to the overall electron-transfer kinetics. For Class C, the SIP rate is limited by the slow rate of CIP right arrow over left arrow SIP interconversion, and the self-exchange proceeds via the contact ion pair by default. Theoretically, the electron-transfer rate constant for the separated ion pair is well-accommodated by the Marcus/Sutin two-state formulation when the precursor in Scheme 2 is identified as the "separated" inner-sphere complex (IS(SIP)) of cofacial DNB(-)/DNB dyads. By contrast, the significantly slower rate of self-exchange via the contact ion pair requires an associative mechanism (Scheme 3) in which the electron-transfer rate is strongly governed by cationic mobility of K(L)(+) within the "contact" precursor complex (IS(CIP)) according to the kinetics in Scheme 4.     

Cation,solvent, and substituent effects on the decay kinetics of alkali metal salts of diaryl disulfide radical anions in nonaqueous solutions

The transient diaryl disulfide radical anions (RSSR^?) were produced in nonaqueous solutions at room temperature by the flash photolysis of a solution of arylthiolate ion pair in the presence of the excess corresponding disulfide. The transient spectra were almost identical with those obtained from γ-radiolysis of the disulfides in 77 K 2-methyl-tetrahydrofuran (MTHF) glassy matrix. The spectra of disulfide radical anions in nonaqueous solutions were changed by cations, solvents, and para-substituents depending on the ion pair properties. The tighter ion pairs showed a shift of absorption band to the shorter wavelength. The disulfide radical anions decay by a unimolecular dissociation reaction to yield thiolate anion and thiyl radical. The decay kinetics were first-order in the initial time region. The rate constants obtained were changed by the counter cations in the order Na⁺ > K⁺ > Cs⁺ > Li⁺, and by solvents. The tighter ion pairs of the disulfide radical anions showed faster dissociation reaction. This is due to stabilization of a transition state with the counter cation.     

Nonadiabatic proton/deuteron transfer within the benzophenone-triethylamine triplet contact radical ion pair: exploration of the influence of structure upon reaction

The dynamics of proton transfer within a variety of substituted benzophenone-triethylamine triplet contact radical ion pairs are examined in the solvents acetonitrile and dimethylformamide. The correlation of the proton-transfer rate constants with DeltaG reveals an inverted region. The kinetic deuterium isotope effects are also examined. The solvent and isotope dependence of the transfer processes are analyzed within the context of the Lee-Hynes model for nonadiabatic proton transfer. Theoretical analysis of the experimental data suggests that the reaction path for proton/deuteron transfer involves tunneling, and the origin of the inverted region is attributed to a curved tunneling path.     

Photoreduction of oxoisoaporphine dyes by amines: transient-absorption and semiempirical quantum-chemical studies

Photoreduction by amines of oxoisoaporphine dyes occurs via a stepwise mechanism of electron-proton-electron transfer that leads to the metastable N-hydrogen oxoisoaporphine anion. During photoreduction that occurs from the triplet manifold of the oxoisoaporphine, a radical ion A(-)(*), a neutral-hydrogenated radical A-NH(*), and the metastable ion A-NH(-) of the oxoisoaporphine are formed. We present time-resolved spectroscopic data and quantum mechanical semiempirical PM3 and ZINDO/S results for the transient species formed during the flash photolysis of oxoisoaporphines in the presence of amines. These calculations reproduce adequately the experimental spectra of the triplet-triplet absorption near 450 nm, and that of neutral hydrogenated radical of the studied oxoisoaporphines centered at 390 nm. A transient absorption observed near 490 nm, for all of the studied systems, was explained by considering the formation of radical ion pair between the radical anion of the oxoisoaporphine, A(-)(*), and the radical cation of the amine, whose ZINDO/S calculated spectra generate the strongest transition near the experimentally observed absorption maximum at 490 nm, supporting the formation of a radical ion pair complex as the first step of the photoreduction.     

Crossover from superexchange to hopping as the mechanism for photoinduced charge transfer in DNA hairpin conjugates

The mechanism and dynamics of photoinduced charge separation and charge recombination have been investigated in synthetic DNA hairpins possessing donor and acceptor stilbenes separated by one to seven A:T base pairs. The application of femtosecond broadband pump-probe spectroscopy, nanosecond transient absorption spectroscopy, and picosecond fluorescence decay measurements permits detailed analysis of the formation and decay of the stilbene acceptor singlet state and of the charge-separated intermediates. When the donor and acceptor are separated by a single A:T base pair, charge separation occurs via a single-step superexchange mechanism. However, when the donor and acceptor are separated by two or more A:T base pairs, charge separation occurs via a multistep process consisting of hole injection, hole transport, and hole trapping. In such cases, hole arrival at the electron donor is slower than hole injection into the bridging A-tract. Rate constants for charge separation (hole arrival) and charge recombination are dependent upon the donor-acceptor distance; however, the rate constant for hole injection is independent of the donor-acceptor distance. The observation of crossover from a superexchange to a hopping mechanism provides a "missing link" in the analysis of DNA electron transfer and requires reevaluation of the existing literature for photoinduced electron transfer in DNA.     

Non-ideality in vinyl polymerization—VIII: Retarded polymerization of methyl methacrylate in presence of p-benzoquinone initiated by azobisisobutyronitrile

Detailed kinetic analysis of AIBN-initiated polymerization of methylmethacrylate in presence of p-benzoquinone has been reported. Primary radical transfer, whereby a primary radical transfers its radical reactivity to a transfer agent, has been considered along with macroradical transfer. It is found that the former process is quite appreciable in the system and must be allowed for to arrive at accurate values of transfer constants. Values of transfer constants for both primary radicals and macroradicals towards benzoquinone, and characteristic constants for degradative chain transfer and primary radical transfer have been evaluated applying the mathematical treatment developed previously. The mode of termination of macroradicals by fairly stable microradicals formed as a result of transfer has also been discussed.     

Transient Radicals Formed by Electron Transfer between inorganic ions and excited aromatic molecules in polar solvents

Fluorescence quenching of aromatic molecules by inorganic anions has been the subject of many investigations, yet the nature of the quenching mechanism is not fully understood. The fluorescence-quenching rate constants correlate with electrochemical data, but the radicals expected to form upon transfer of an electron to the excited aromatic molecules have escaped observation. We report the first observation of radical-ion species formed by electron-transfer quenching with inorganic anions in acetonitrile. A decisive step leading to formation of separated radical ions is the trapping of the primary charge-transfer complex by a second inorganic ion.     

Kinetic studies of a fast, reversible alkene radical cation cyclization reaction

The radical cation formed by mesylate heterolysis from the 1,1-dimethyl-7,7-diphenyl-2-mesyloxy-6-heptenyl radical was studied in several solvents. Computational results suggest that the initially formed acyclic radical cation is a resonance hybrid with partial positive charge in both double bonds of 1,1-diphenyl-7-methyl-1,6-octadiene (10). Thiophenol trapping was used as the competing reaction for kinetic determinations. The acyclic radical cation rapidly equilibrates with a cyclic distonic radical cation, and thiophenol trapping gives acyclic product 10 and cyclic products, mainly trans-1-(diphenylmethyl)-2-(1-methylethenyl)cyclopentane (11). The rate constants for cyclization at ambient temperature were k = (0.5-2) x 10(10)(s-1), and those for ring opening were k = (1.5-9) x 10(10)(s-1). Laser flash photolysis studies in several solvents show relatively slow processes (k = (2.5-260) x 10(5)(s-1) that involve rate-limiting trapping reactions for the equilibrating radical cations. In mixtures of fluoroalcohols RfCH2OH in trifluoromethylbenzene, variable-temperature studies display small, and in one case a negative, activation energies, requiring equilibration reactions prior to the rate-limiting processes. Fast equilibration of acyclic and cyclic radical cations implies that product ratios can be controlled by the populations of the acyclic and cyclic species and relative rate constants for trapping each.     

Electron transfer between guanosine radicals and amino acids in aqueous solution. II. Reduction of guanosine radicals by tryptophan

The efficiency of the chemical pathway of DNA repair is studied by time-resolved chemically induced dynamic nuclear polarization (CIDNP) using the model system containing guanosyl base radicals, and tryptophan as the electron donor. Radicals were generated photochemically by pulsed laser irradiation of a solution containing the photosensitizer 2,2'-dipyridyl, guanosine-5'-monophosphate, and N-acetyl tryptophan. Depending on the pH of the aqueous solution, four protonation states of the guanosyl radical are formed via electron or hydrogen atom transfer to the triplet excited dye. The rate constants of electron transfer from the amino acid to the guanosyl radical were determined by quantitative analysis of the CIDNP kinetics, which is very sensitive to the efficiency of radical reactions in the bulk, and rate constants vary from (1.0 +/- 0.3) x 10(9) M(-1) s(-1) for the cation and dication radicals of the nucleotide to (1.2 +/- 0.3) x 10(7) M(-1) s(-1) for the radical in its anionic form. They were found to be higher than the corresponding values for electron transfer in the case of N-acetyl tyrosine as the reducing agent.