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1.
A number of molecular diagnostic methods have been developed for the detection and identification of mutations in tumor samples, which are important for the choice of treatment in the context of personalized medicine. For the treatment of metastatic melanoma, Vemurafenib is recommended for patients with BRAF V600 activating mutations. However, the different assays developed to date for the detection of these mutations lack sensitivity or specificity or do not allow a sequencing-based identification or validation of the mutation. Recently, enhanced improved and complete enrichment co-amplification at lower denaturation temperature-polymerase chain reaction (E-ice-COLD-PCR) has been developed as a sensitive method for the detection and identification of mutations in KRAS codons 12/13. Here, we present the first E-ice-COLD-PCR assay for the detection and identification of BRAF codon 600 mutations, which has a large dynamic range, as 25 pg to 25 ng can be used as DNA input without any reduction in mutation enrichment efficiency, and which can detect down to 0.01 % of mutated alleles in a wild-type background. The assay has been validated on fresh frozen, formalin-fixed paraffin-embedded (FFPE), and plasma samples of melanoma patients and has allowed the detection and identification of BRAF mutations present in samples appearing as wild type using standard pyrosequencing, endpoint genotyping, or Sanger sequencing. Thus, the BRAF V600 E-ice-COLD-PCR assay is currently one of the most powerful molecular diagnostic tools for the ultrasensitive detection and identification of BRAF codon 600 mutations.  相似文献   

2.
The MALDI-LTQ-Orbitrap XL mass spectrometer is a high performance instrument capable of high resolution and accurate mass (HRAM) measurements. The maximum m/z of 4000 precludes the MALDI analysis of proteins without generating multiply charged ions. Herein, we present the study of HRAM laserspray ionization mass spectrometry (MS) with MS/MS and MS imaging capabilities using 2-nitrophloroglucinol (2-NPG) as matrix on a MALDI-LTQ-Orbitrap XL mass spectrometer. The optimized conditions for multiply charged ion production have been determined and applied to tissue profiling and imaging. Biomolecules as large as 15 kDa have been detected with up to five positive charges at 100 K mass resolution (at m/z 400). More importantly, MS/MS and protein identification on multiply charged precursor ions from both standards and tissue samples have been achieved for the first time with an intermediate-pressure source. The initial results reported in this study highlight potential utilities of laserspray ionization MS analysis for simultaneous in situ protein identification, visualization, and characterization from complex tissue samples on a commercially available HRAM MALDI MS system. Graphical Abstract
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3.
Point Mutations on the Kirsten rat sarcoma viral oncogene homolog (KRAS) have been identified as an important predictive biomarker for response to cancer therapy targeting the epidermal growth factor receptor. KRAS mutations are prevalent in up to 40 % of all colorectal carcinomas, and routinely conducted KRAS genotyping is becoming mandatory to predict therapy success and to reduce therapy costs. We report a low-cost, disposable and ready-to-use centrifugal microfluidic cartridge (termed GeneSlice) containing preloaded primers and probes. The GeneSlice cartridge enables the parallel detection of the seven most relevant KRAS point mutations by allele-specific real-time PCR. It represents a cost effective alternative to dideoxy-sequencing with a faster time-to-result (~ 2 h versus up to 20 h in case of dd-sequencing). Microfluidic processing of the GeneSlice along with allele-specific amplification and real-time detection are conducted in a slightly modified, commercially available PCR thermocycler. Intra-chip standard deviation of Cq values on the GeneSlices is negligible (GeneSlice 1: Cq,std.dev. = 0.13; GeneSlice 2: Cq,std.dev?=?0.26). In 23 of 24 experiments, the data for genotyping 6 cancer cell lines (n?=?4 per cell line) agreed with dd-sequencing. Additionally, DNA derived from microdissected formalin-fixed and paraffin embedded colorectal carcinomas of two cases was genotyped correctly and reproducibly (n?=?3 per patient; one GeneSlice excluded from evaluation). The GeneSlice therefore clearly demonstrated the potential to become a valuable tool for routine diagnostics of KRAS mutations by reducing costs and hands-on time. Figure
Photograph of a centrifugal microfluidic cartridge “GeneSlice” for multiplex genotyping of KRAS point mutations from tumor cell DNA by allele-specific real-time PCR. Information about the mutation status is required to predict success of state-of-the-art cancer therapy with antibodies  相似文献   

4.
The heat of reaction and kinetics of curing of diglycidyl ether of bisphenol-A (DGEBA) type of epoxy resin with catalytic amounts of ethylmethylimidazole (EMI) have been studied by differential power-compensated calorimetry as a part of the program for the study of process monitoring for composite materials. The results were compared with those from 1∶1 and 1∶2 molar mixtures of DGEBA and EMI. A method of determination of heat of reaction from dynamic thermoanalytical instruments was given according to basic thermodynamic principles. The complicated mechanism, possibly involving initial ionic formation, has also been observed in other measurements, such as by time-domain dielectric spectroscopy. The behavior of commercially available DGEBA resin versus purified monomeric DGEBA were compared. The melting point of purified monomeric DGEBA crystals is 41.4 °C with a heat of fusion of 81 J/g. The melt of DGEBA is difficult to crystallize upon cooling. The glass transition of purified DGEBA monomer occurs around ?22 °C with aΔC p of 0.60 J/K/g.  相似文献   

5.
An electron spectrometric study has been performed on HCl using metastable helium and neon atoms as well as neon resonance photons. High resolution electron spectra were obtained with two different beam apparatuses for a mixed He(21 S, 23 S) beam, a pure He(23 S) beam, and, for the first time, state-selected pure Ne(3s 3 P 2) and pure Ne(3s 3 P 0) beams, and for NeI resonance photons. For the system He(23 S)+HCl the vibrational populationsP(υ′) of the formed HCl+ (X 2 i , υ′) and HCl+ (A 2Ω+, υ′) ions are found to differ from the Franck-Condon factors for unperturbed potentials, indicating slight bond stretching in HCl upon He(23 S) approach. For He(21 S)+HCl the vibrational peak shapes and vibrational populations are substantially different from the He(23 S) case, pointing to an additional, charge exchanged interaction (He++HCl?) in the entrance channel of the former system. For the first time, we have detected the electrons in both the He(21 S)+HCl and He(23 S)+HCl spectra associated with the major mechanism for the formation of Cl+ ions: energy transfer to repulsive HCl** Rydberg states, dissociating toH(1s) and autoionizing Cl**(1 D 2 nl) atoms. For both Ne(3 P 2)+HCl and Ne(3 P 0)+HCl, the populationsP(υ′) of both final molecular states HCl+ (X, A) agree closely with the Franck-Condon factors at the average relative collision energyē coll=55 meV and, for HCl+ (A 2Ω+), also atē coll=130 meV.  相似文献   

6.
We describe a new chemiluminescence (CL) system based on the oxidation of rhodamine B (RhoB) with alkaline potassium permanganate in the presence of gold nanoparticles (Au-NPs) and anionic detergent sodium dodecyl sulfate. Free RhoB is weakly chemiluminescent when oxidized with permanganate at alkaline pH values. However, a remarkably strong enhancement of CL is observed in the presence of Au-NPs, probably due to a strong interaction between RhoB and the NPs. The possible mechanism was studied via recording the CL emission. It is also found that the intensity of CL gradually decreases in the presence of cyanide due to its interaction with the Au-NPs. The relation between the decreased CL intensity and cyanide concentration was exploited to develop a method for the determination of cyanide in the 0.01–0.5 μM concentration range, with a detection limit of 2.8 nM. The method was used to determine cyanide in spiked water, urine, and serum. Figure
Alkaline permanganate-rhodamine B-SDS CL reaction is dramatically enhanced by gold nanoparticles. Based on the inhibiting effect of cyanide on this system, a sensitive CL method was developed for its determination  相似文献   

7.
The kinetics of HCl oxidation at 350–425°C over the supported CuCl2-KCl-LaCl3 catalyst has been investigated using a gradientless technique. The HCl oxidation kinetics in the Deacon and methane oxychlorination reactions has been studied in order to substantially extend the \(Cl_2 \left( {P_{Cl_2 } } \right)\) partial pressure variation range. When the reaction rate is independent of P HCl, HCl oxidation on the copper-potassium catalysts is described by the same rate equation, irrespective of whether the catalyst contains lanthanum or not. The introduction of lanthanum chloride increases the HCl oxidation rate by one order of magnitude. The rate equation obtained has significant advantages over the equation corresponding to the Kenney-Slama equation. The kinetic features of HCl oxidation over the lanthanum-containing catalyst, whether the process depends on P HCl or not, can be explained in terms of the superposition of the Kenney-Slama dissociative mechanism and the catalytic mechanism suggested here. The role of lanthanum chloride in both HCl oxidation pathways is considered.  相似文献   

8.
Aromatization of 4-aryl(hetaryl)tetrahydroimidazo[4,5-c]pyridine-6-carboxylic acids and their lithium salts by the action of dimethyl sulfoxide has been revealed for the first time. Heating of these compounds in DMSO for 5–7 h at 90–95°C leads to the formation of 4-aryl(hetaryl)imidazo[4,5-c]pyridine derivatives as a result of dehydrogenation and decarboxylation. Heating of the corresponding lithium salts generated in situ (DMSO, 90–95°C, 3–5 h) affords difficultly accessible 4-aryl(hetaryl)imidazo[4,5-c]pyridine-6-carboxylic acids.  相似文献   

9.
Quantitation of cytochrome c (Cyt c) in cell lysates through surface-assisted laser desorption/ionization mass spectrometry (SALDI-MS) using gold nanoparticles (Au NPs) as the matrix and GR-10 peptide as an internal standard has been demonstrated. To shorten digestion time, temperature sensitive microgels containing trypsin (TR) and Au NPs have been employed. As-prepared functional microgels (TR/Au NPs/MGs) allow digestion of Cyt c within 15 s under microwave irradiation. The internal standard SALDI-MS approach provides linearity (R2 = 0.98) of MS signal ratio (I 1168.6/I 1067.6) of the tryptic digested peptide (m/z 1168.6) to GR-10 peptide (m/z 1067.6) against the concentration of Cyt c ranging from 25 to 200 nM, with a limit of detection (at a signal-to-noise ratio of 3) of 10 nM. This approach has been validated by the analysis of the lysates of HeLa cells, with an average concentration of 13.7?±?3.5 μM for cytoplasmic Cyt c. Increased concentrations of Cyt c in the HeLa cells treated with etoposide (a commercial drug) or carbon dots (potential drug) have been revealed through this simple, sensitive, and rapid SALDI-MS approach, supporting the drugs induced Cyt c-mediated apoptosis of the cells. This study has shown that this internal standard SALDI-MS approach holds great potential for cell study. Graphical Abstract
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10.
Micrococcal nuclease has been covalently attached to CNBr-activated Sepharose 4B by coupling through three different enzyme functions: (a) amino groups; (b) carboxyl groups; and (c) tyrosyl or histidyl residues. On the basis of coupling yield and catalytic efficiency, Sepharose-(NH2) nuclease derivatives were chosen for further activity andstability studies. The activity of the insoluble enzyme has been evaluated with macromolecular (DNA) and small (synthetic nucleotide) substrates; with the latter the enzyme retains 70% of native enzyme activity. Good enhancement of enzyme stability in the 4–40°C range has been observed.  相似文献   

11.
Non-Systematic Evolution of Ligands by EXponential enrichment (SELEX)selection of aptamers, a novel technology for aptamer selection from libraries of random DNA (or RNA) sequences, involves repetitive steps of partitioning without polymerase chain reaction (PCR) amplification between them. This selection is based on non-equilibrium capillary electrophoresis of equilibrium mixtures (NECEEM) and has exceptionally high efficiency. In this paper, a mathematical analysis was carried out to predict the levels of enrichment of non-SELEX selection under different conditions such as different protein concentrations and different efficiencies of partitioning. Investigated results suggest that the magnitude of the bulk affinity (k d) being 104 or 105 μM for the initial pool has no obvious effect on selective enrichment and that the first, second, and third rounds of non-SELEX selection have different optimum protein concentration values [T f] that give maximum enrichment levels when [T f] ranges from 0.0005 to 0.5 μM. The significance of analyzing selective enrichment of NECEEM-based non-SELEX with the efficiency of partitioning target-bound ligands from free ligands has been demonstrated.  相似文献   

12.
High-performance affinity chromatography (HPAC) was utilized to examine the binding of very low density lipoprotein (VLDL) with drugs, using R/S-propranolol as a model. These studies indicated that two mechanisms existed for the binding of R- and S-propranolol with VLDL. The first mechanism involved non-saturable partitioning of these drugs with VLDL, which probably occurred with the lipoprotein’s non-polar core. This partitioning was described by overall affinity constants of 1.2 (±0.3)?×?106 M?1 for R-propranolol and 2.4 (±0.6)?×?106 M?1 for S-propranolol at pH 7.4 and 37 °C. The second mechanism occurred through saturable binding by these drugs at fixed sites on VLDL, such as represented by apolipoproteins on the surface of the lipoprotein. The association equilibrium constants for this saturable binding at 37 °C were 7.0 (±2.3)?×?104 M?1 for R-propranolol and 9.6 (±2.2)?×?104 M?1 for S-propranolol. Comparable results were obtained at 20 and 27 °C for the propranolol enantiomers. This work provided fundamental information on the processes involved in the binding of R- and S-propranolol to VLDL, while also illustrating how HPAC can be used to evaluate relatively complex interactions between agents such as VLDL and drugs or other solutes.  相似文献   

13.
High resolution photoabsorption spectra of HCl and Cl2 have been measured near the chlorineK edge in the 2810–2850 eV photon energy range. Below the ClK edge, the strongest resonance is interpreted as a simple core excitation into the unoccupied σ* valence orbital for both molecules, leading to a markedly repulsive state. Higher resonances due to low lying Rydberg states, are observed in both systems, but with a larger oscillator strength for HCl as compared to Cl2. In Cl2, the σ* orbital is deep enough to avoid any mixing with Rydberg orbitals. In HCl, we observe the dipole forbidden Cl 1s → 4s transition which denotes a strong 4s–4p hybridization. Above the ClK edge, the multiplet features seen for HCl are analysed in terms of double-core-valence excited vacancy states. In Cl2, their counterpart are found very close to the ionization threshold because of the deep σ* orbital and possibly because the excited core and valence electrons originates either from the same atomic site or from different ones.  相似文献   

14.
We report herein the development of a highly sensitive colorimetric method for detection of d-Penicillamine using citrate-capped gold nanoparticles (AuNPs). This assay relies upon the distance-dependent of gold nanoparticles surface plasmon resonance band of gold nanoparticles. By replacing the thiol-containing chelator drug, d-Penicillamine, with citrate on the gold nanoparticles surface, a new peak appearing at a longer wavelength intensifies and shifts further to the red from the original peak position due to aggregation of gold nanoparticles which depends on ionic strength, gold nanoparticles and d-Penicillamine concentration. During this process, the plasmon band at 521 nm decreases gradually along with the formation of a new red-shifted band at 630 nm. The calibration curve which is derived from the ratio intensities of absorbance at longer wavelength (630 nm) to original wavelength (521 nm) displays a linear relation in the range of 5.0 × 10?6–3.0 × 10?4 M d-Penicillamine. Lower limit of detection for d-Penicillamine, at the signal-to-noise ratio of 3 (3σ), was 3.8 × 10?6 M. The developed methodology was successfully applied for the determination of d-Penicillamine in human urine and plasma.  相似文献   

15.
Vapor pressures for the system I (dimethyl sulfoxide/H2O=DMSO/H2O) and isotopic differential pressures I-II (II=DMSO/D2O) have been measured between 25 and 70°C at DMSO concentrations of 0.05, 0.15, 0.30, 0.45, 0.60, 0.70, 0.80, 0.87, and 0.92 mole fraction. A high-precision differential method was used. The total pressures over the solutions, I, have been fitted to a relation derived from the Duhem-Margules equation, P T =P 1 o X1γ1+P 2 o X2γ2, with γ1=exp[∑kαkX 2 k ] and $$\gamma _2 = exp[\sum \alpha _k X_2^k - \sum (\alpha _k /(k - 1))(kX_2^{k - 1} - 1)].$$ . The αk are parameters andk is a number ≥2. The αk were taken as temperature dependent. Four parameters sufficed to fit the data within experimental error. Excess partial molal properties derived from the fits are in quantitative agreement with earlier literature results derived from the directly measured partial pressures, but the present data extend over a wider temperature range. The isotopic differential pressures I-II were similarly fitted to the relation above. The excess free energies and enthalpiesG I E andH I E are large and negative. The isotope effects ΔG I,II E =G I E ?G II E and ΔH I,II E are negative. They are discussed in detail in terms of the theory of isotope effects in condensed phases and demonstrated to be consistent with that theory and with the available spectroscopic data. A small amount of enthalpy data for the solution of DMSO in HOH and DOD is reported.  相似文献   

16.
Using a beam apparatus, we have measured the HCl+ (A,v′→X,v″) fluorescence spectra of HCl+ (A,v′) ions formed in HeI (58.4 nm), and NeI (73.6 nm) photoionization and, for the first time, in He (23 S) Penning ionization under single collision conditions with a wavelength bandwidth around 1 nm. In addition, we have studied Ne (3s 3 P 2, 0) Penning ionization of HCl at three different collision energies. The procedure and the problems in extracting HCl+ (A,v′) vibrational populations from the data are discussed in some detail. Thedirect comparison of photoionization and Penning ionization data allows definitive conclusions to be drawn on the question whether final state interactions in the Penning reaction change the “nascent” vibrational population (determined by electron spectrometry); for He (23 S)+HCl, such changes are shown to be absent within the experimental uncertainty (<±10%). For Ne (3s 3 P 2, 0)+HCl, the HCl+ (A,v′=0, 1) populations are also found to be close to those measured by electron spectrometry and essentially independent of collision energy in the range 34–96 meV. From measurements of the fluorescence intensity as a function of HCl density, we have evidence for a fast loss of HCl+ (A,v′) ions in collisions with HCl (rate constant around 5·10?9 cm3s?1).  相似文献   

17.
The aim of is this study is to explore the role of tissue histidine-rich glycoprotein (HRG) RNA as a promising clinically useful biomarker for breast cancer patients prognosis using nanogold assay. Expression of the HRG RNA was assessed by gold nanoparticles and conventional RT-PCR after purification by magnetic nanoparticles in breast tissue samples. The study included 120 patients, 60 of which were histologically proven breast carcinoma cases, 30 had benign breast lesions and 30 were healthy individuals who had undergone reductive plastic surgery. ER, PR and HER2 status were also investigated. The prognostic significance of tissue HRG RNA expression in breast cancer was explored. The magnetic nanoparticles coated with specific thiol modified oligonucleotide probe were used successfully in purification of HRG RNA from breast tissue total RNAs with satisfactory yield. The developed HRG AuNPs assay had a sensitivity and a specificity of 90 %, and a detection limit of 1.5 nmol/l. The concordance rate between the HRG AuNPs assay with RT-PCR after RNA purification using magnetic nanoparticles was 93.3 %. The median follow-up period was 60 months. Among traditional prognostic biomarkers, HRG was a significant independent prognostic marker in relapse-free survival (RFS). HRG RNA is an independent prognostic marker for breast cancer and can be detected using gold NPs assay, which is rapid, sensitive, specific, inexpensive to extend the value for breast cancer prognosis.  相似文献   

18.
Salmonella enterica subsp. enterica ser. enteritidis and Salmonella enterica subsp. enterica ser. typhimurium are the most common and severe food-borne pathogens responsible for causing salmonellosis in humans and animals. The development of an early and ultra-sensitive detection system is the first critical step in controlling this disease. To accomplish this, we used the cell systematic evolution of ligands by exponential enrichment (Cell-SELEX) technique to identify single-stranded DNA (ssDNA) aptamers to be used as detection probes that can specifically bind to S. enteritidis and S. typhimurium. A total of 12 target-specific ssDNA aptamers were obtained through ten rounds of Cell-SELEX under stringent selection conditions, and negative selection further enhanced the selectivity among these aptamers. Aptamer specificity was investigated using the gram-negative bacteria E. coli and P. aeruginosa and was found to be much higher towards S. enteritidis and S. typhimurium. Importantly, three candidate aptamers demonstrated higher binding affinities and the dissociation constants (Kd) were found to be in the range of nanomolar to submicromolar levels. Furthermore, individual aptamers were conjugated onto polyvalent directed aptamer polymer, which led to 100-fold increase in binding affinity compared to the individual aptamers alone. Taken together, this study reports the identification of higher affinity and specificity ssDNA aptamers (30mer), which may be useful as capture and detection probes in biosensor-based detection systems for salmonellosis.  相似文献   

19.
Poly(p-chloromethyl styrene)-graft-poly(methyl methacrylate) (PCMS-g-PMMA) and poly(p-chloromethyl styrene)-graft-poly(benzyl methacrylate) (PCMS-g-PBzMA) graft copolymers with asymmetric branches are synthesized via the combination of cationic polymerization and atom transfer radical polymerization (ATRP). The process involves first, the preparation of poly(p-chloromethyl styrene) (PCMS-CH2Cl) macroinitiator without any cross-linking or side reactions through pendant benzyl chloride (?CH2Cl) functionality by cationic polymerization using a simple FeCl3-based initiating system at 25 °C. The as-synthesized PCMS-CH2Cl, without any transformation, is then used as the macroinitiator to graft PMMA and PBzMA branches by ATRP to produce PCMS-g-PMMA and PCMS-g-PBzMA graft copolymers of varying compositions with controlled molecular weight and moderately narrow polydispersities (M w/M n?≤?1.32). The resulting PCMS21 -g-PMMA232 graft copolymer in thin film form phase separates into spherical morphology with an average diameter of 170?±?72 nm. Whereas the PCMS21 -g-PBzMA156 graft copolymer gives worm-like nanostructures with an average length of 94 nm and width of 31 nm due to phase separation as visualized through atomic force microscopy. On the other hand, the phase-separated morphology is not very well-defined for other graft copolymers (PCMS113 -g-PMMA227 and PCMS113 -g-PBzMA154) thin films containing longer PCMS chains. This approach represents a rapid and convenient route to prepare unique spherical/worm-like polymer nanostructures. Figure
Well-defined poly(p-chloromethyl styrene)-graft-poly(methyl methacrylate) (PCMS-g-PMMA) and poly(p-chloromethyl styrene)-graft-poly(benzyl methacrylate) (PCMS-g-PBzMA) graft copolymers with asymmetric branches are synthesized by the combination of living cationic polymerization and atom transfer radical polymerization (ATRP). The resulting PCMS21 -g-PMMA232 and PCMS21 -g-PBzMA156 graft copolymers phase separate into nanostructured spherical and worm-like morphologies, respectively, in thin film form. The phase-separated morphology is not very well-defined for graft copolymers (PCMS113 -g-PMMA227 and PCMS113 -g-PBzMA154) thin films containing longer PCMS chains.  相似文献   

20.
A rigorous thermodynamic treatment appropriate for surface adsorption from mixed aqueous solution of alkali and polyprotic acid was derived. Those equations were applied to mixed aqueous solution/air systems of alkali metal hydroxide and FeIII complex with ethylenediamine- N, N, N′,N′-tetraacetate (Fe-EDTA). Surface density of each species arising from Fe-EDTA was separately evaluated, and thus, surface activity of Fe-EDTA was studied, especially its dependence on pH and how it is influenced by the counter cations. Fe-EDTA was positively adsorbed at the water/air interface at very low pHs and negatively at high pHs. The pH range of positive adsorption of Fe-EDTA with potassium ion, as a counter ion, was wider than that with sodium ion. Thus, potassium ion, a structure breaker, tended to smooth surface adsorption of Fe-EDTA at the water/air interface, whereas sodium ion, a structure maker, tended to withdraw Fe-EDTA from the interfacial region.  相似文献   

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