Energy landscapes of ion clusters in isotropic quadrupolar and octupolar traps

The energy landscapes of ion clouds confined in isotropic quadrupolar and octupolar traps are characterized for several representative cluster sizes. All clusters exhibit stable multishell structures that belong to separate funnels. Quadrupolar confinement leads to more homogeneous clusters and denser distributions of isomers than octupolar confinement. Statistical analysis of the transition states indicates that the barriers associated with intrashell motion are lower but more asymmetric and more cooperative compared to intershell motion. The relaxation between low-energy funnels with different arrangements of shells mostly exhibits Arrhenius kinetics, with a weak variation of the activation energy at higher temperatures.     

Calibration of ion spray mass spectra using cluster ions

Mass calibration for ion spray mass spectrometry can be achieved by using cluster ions formed by flow injection of solutions of alkali metal salts in aqueous acetonitrile into the liquid flowing to the ion spray needle. Source contamination is thereby reduced to a minimum. For quadrupole mass analyzers, sodium iodide provides an ideal compromise between undesirable spectral complexity and spacings between calibrant mass peaks sufficiently close that interpolation errors are negligible. When much closer spacings are required, protonated water clusters provide an excellent calibration up to about m/z 1000. If higher mass ranges are required with a large number of calibrant peaks, a solution of mixed alkali metal iodides does provide the expected spectra but intensities are poor at higher m/z values. For liquid chromatography with on-line mass spectrometry (LC/MS) the mass calibration may be checked without changing the mobile phase by post-column flow injection of a cesium carbonate solution, since the carbonate anion is wholly displaced by the anion of the mobile phase acid modifier, resulting in no mixed clusters. The metal salt calibrants have the additional advantage of being useful over a wide range of tuning parameters in the atmospheric pressure ionization source, covering those appropriate to both relative molecular mass determinations of large proteins and to LC/MS of small analyte species.     

Relationships between cluster secondary ion mass intensities generated by different cluster primary ions

Measurements are described to evaluate the constitution of secondary ion mass spectra for both monatomic and cluster primary ions. Previous work shows that spectra for different primary ions may be accurately described as the product of three material-dependent component spectra, two being raised to increasing powers as the cluster size increases. That work was for an organic material and, here, this is extended to (SiO₂) _t OH⁻ clusters from silicon oxide sputtered by 25 keV Bi _n ⁺ cluster primary ions for n = 1, 3, and 5 and 1 ≤ t ≤ 15. These results are described to a standard deviation of 2.4% over 6 decades of intensity by the product of a constant with a spectrum, H _SiOH/*, and a power law spectrum in t. This evaluation is extended, using published data for Si _t ⁺ sputtered from Si by 9 and 18 keV Au⁻ and Au₃⁻, with confirmation that the spectra are closely described by the product of a constant with a spectrum, H _Si^*, and a simple spectrum that is an exponential dependence on t, both being raised to appropriate powers. This is confirmed with further published data for 6, 9, 12, and 18 keV Al⁻ and Al₂⁻ primary cluster ions. In all cases, the major effect of intensity is then related to the deposited energy of the primary ion at the surface. The constitution of SIMS spectra, for monatomic and cluster primary ion sources, is shown, in all cases, to be consistent with the product of a constant with two component spectra raised to given powers.     

Chemical mass shifts in resonance ejection experiments in the quadrupole ion trap

Chemical mass shifts were measured in a Paul ion trap operated in the mass-selective instability scan with resonance ejection using a custom-built instrument. These shifts, which can be as much as 2%, decrease with increasing endcap electrode separation owing to changes in the higher order contributions to the electric field. They also decrease with decreasing helium buffer gas pressure. Both of these effects are analogous to those found with boundary ejection. This suggests that the previously proposed chemical mass shift mechanism based on compound-dependent collisional modification of the ejection delay produced by field faults near the endcap electrode apertures holds true also for resonance ejection. The influence of the resonance frequency on chemical mass shifts was also investigated and it is shown that at certain working points (values of the Mathieu parameter q(z) and a(z)) non-linear resonances greatly reduce the ejection delay for all ions, regardless of their chemical structures, and thus reduce the magnitude of the chemical mass shift. Energetic collisions leading to dissociation can take place at an earlier stage during the ejection process in the mass analysis scan when using resonance ejection compared with boundary ejection. This leads to even larger chemical mass shifts of fragile ions in resonance ejection. Increasing the resonance voltage amplitude can enhance this effect. The chemical mass shifts of fragile ions increase with increase in the resonance voltage amplitude, whereas negligible changes occur for structurally stable ions.     

Proton-bound cluster ions in ion mobility spectrometry

Gaseous oxygen and nitrogen bases, both singly and as binary mixtures, have been introduced into ion mobility spectrometers to study the appearance of protonated molecules, and proton-bound dimers and trimers. At ambient temperature it was possible to simultaneously observe, following the introduction of molecule A, comparable intensities of peaks ascribable to the reactant ion (H₂O)_nH⁺, the protonated molecule AH⁺ and AH⁺ · H₂O, and the symmetrical proton bound dimer A₂H⁺. Mass spectral identification confirmed the identifications and also showed that the majority of the protonated molecules were hydrated and that the proton-bound dimers were hydrated to a much lesser extent. No significant peaks ascribable to proton-bound trimers were obtained no matter how high the sample concentration. Binary mixtures containing molecules A and B, in some cases gave not only the peaks unique to the individual compounds but also peaks due to asymmetrical proton bound dimers AHB⁺. Such ions were always present in the spectra of mixtures of oxygen bases but were not observed for several mixtures of oxygen and nitrogen bases. The dimers, which were not observable, notable for their low hydrogen bond strengths, must have decomposed in their passage from the ion source to the detector, i.e. in a time less than ∼5 ms. When the temperature was lowered to −20 °C, trimers, both homogeneous and mixed, were observed with mixtures of alcohols. The importance of hydrogen bond energy, and hence operating temperature, in determining the degree of solvation of the ions that will be observed in an ion mobility spectrometer is stressed. The possibility is discussed that a displacement reaction involving ambient water plays a role in the dissociation.     

Theoretical characterization of laser- and sympathetically-cooled ions in surface-electrode ion traps

Using molecular dynamics simulations we characterize theoretically Coulomb clusters of laser- and sympathetically-cooled ions in a five-wire surface-electrode ion trap. We show that the asymmetry of the trapping potential leads to significantly different cluster structures and ion energy distributions in comparison to conventionally used linear Paul traps and to an asymmetric segregation of the ions in bi-component Coulomb clusters. We explore the impact of our results on the implementation of sympathetic cooling of molecular ions in surface-electrode traps and discuss possible challenges for the realization of such experiments.     

Origin of mass shifts in the quadrupole ion trap: dissociation of fragile ions observed with a hybrid ion trap/mass filter instrument

A novel hybrid tandem mass analyzer, coupling a quadrupole ion trap with a quadrupole mass filter, has been constructed to permit mass analysis of ions ejected from the ion trap. The initial application of this instrument is the investigation of the origin of mass shifts in the ion trap due to ion fragility. We hypothesize that fragile ions undergo mass shifts, characterized by peak fronting, due to early ejection from the quadrupole ion trap. As these ions come into resonance with the ejection frequency, they gain kinetic energy, collide with buffer gas molecules and thus can dissociate to produce fragment ions. These fragment ions will not be stable within the ion trap as they are situated past the stability boundary at q(z) = 0. 908. Consequently the fragment ions are ejected prematurely. This results in an apparent mass shift due to peak fronting. The experiments reported here clearly document the production of fragment ions as the origin of mass shifts during the resonant ejection of fragile ions. Copyright 2000 John Wiley & Sons, Ltd.     

Collisional activation of ions in RF ion traps and ion guides: The effective ion temperature treatment

Ion transfer and storage using inhomogeneous radio frequency (RF) electric fields in combination with gas-assisted ion cooling and focusing constitutes one of the basic techniques in mass spectrometry today. The RF motion of ions in the bath gas environment involves a large number of ion-neutral collisions that leads to the internal activation of ions and their effective "heating" (when a thermal distribution of internal energies results). The degree of ion activation required in various applications may range from a minimum level (e.g., slightly raising the average internal energy) to an intense level resulting in ion fragmentation. Several research groups proposed using the effective temperature as a measure of ion activation under conditions of multiple ion-neutral collisions. Here we present approximate relationships for the effective ion temperature relevant to typical operation modes of RF multipole devices. We show that RF ion activation results in near-thermal energies for ions occupying an equilibrium position at the center of an RF trap, whereas increased ion activation can be produced by shifting ions off-center, e.g., by means of an external DC electric field. The ion dissociation in the linear quadrupole ion trap using the dipolar DC ion activation has been observed experimentally and interpreted in terms of the effective ion temperature.     

Origin of adduct ions in the electron-capture mass spectrum of tetracyanoethylene

The high-pressure electron-capture (HPEC) mass spectrum of tetracyanoethylene (TCNE) is dominated by unexpected hydrogen atom and hydrocarbon radical adduct ions when methane is used as the buffer gas. The origin of these unexpected ions was investigated by three separate mass spectrometric experiments: the electron-capture (EC) rate constant of TCNE was determined and integrated into a previously developed kinetic model of HPEC ion source events; electron impact mass spectra of TCNE were obtained following exposure of the ion source surfaces to irradiated methane and irradiated carbon dioxide; and TCNE was determined by gas chromatographic introduction into the HPEC ion source with multiple ion monitoring. All of these experiments suggest that the reactions leading to the major adduct ions observed in the HPEC mass spectrum of TCNE are initiated by alteration of TCNE on the walls of the ion source rather than in the gas phase.     

Photofragmentation of mass resolved carbon cluster ions

The results of a detailed study of the photodissociation of carbon cluster ions, C ₃ ⁺ to C ₂₀ ⁺ , are presented and discussed. The experiments were performed using internally cold cluster ions derived from pulsed laser evaporation of a graphite target rod in a helium buffer gas followed by supersonic expansion. The mass selected clusters were photodissociated using 248 nm and 351 nm light from an excimer laser. Photofragment branching ratios, photodissociation cross sections and data on the laser fluence dependence of photodissociation are reported. For almost all initial clusters, C _n ⁺ , the dominant photodissociation pathway was observed to be loss of a C₃ unit to give a C _n?3 ⁺ ion. This observation is interpreted as indicating that dissociation occurs by a statistical unimolecular process rather than by direct photodissociation. The photodissociation was found to be linear with laser fluence forn>5 with 248 nm and 351 nm light; quadratic forn=5 for 248 nm and 351 nm; and linear forn=4 at 248 nm. Dissociation energies for the carbon cluster ions implied by these results are discussed. The photodissociation cross sections were found to change dramatically with cluster size and with the wavelength of the photodissociating light.     

Simplified application of quadrupolar excitation in Fourier transform ion cyclotron resonance mass spectrometry

A new method for application of quadrupolar excitation to the trapped ion cell of a Fourier transform ion cyclotron resonance (FTICR) mass spectrometer is presented. Quadrupolar excitation is conventionally applied to the two pairs of opposed electrodes that normally perform the excitation and detection functions in the FTICR experiment. Symmetry arguments and numerically calculated isopotential contours within the trapped ion cell lead to the conclusion that quadrupolar excitation can be applied to a single pair of opposed side electrodes. Examples of effective quadrupolar axialization via this method include a sevenfold signal-to-noise enhancement derived from 50 remeasurements of a single population of trapped bovine insulin ions and the selective isolation of a single charge state of horse heart myoglobin after an initial measurement that revealed the presence of 14 charge states.     

Electrospray Lonization Fourier Transform Ion Cyclotron Resonance Mass Spectrometric Study on Sodium Azide Cluster Ions

Sodium azide has rarely been studied in gas phase or in the form of cluster ions and as a model of solid energetic substances and inorganic azide salt was ionized by electrospray ionization (ESI) and studied by high resolution Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry (MS) systematically. This paper highlights the effects of experimental conditions on the formation of salt cluster and the collision activation dissociation pathways of cluster ions to develop a microscopic understanding of inorganic azide salt clusters.     

Resonance shifts in the excitation of the n = 0, K = 1 to 6 quadrupolar resonances for ions confined in a linear ion trap

Experiments examining the excitation of the quadrupolar n = 0, K = 1 to 6 resonances for the ion reserpine in a linear ion trap have been shown to produce resonance shifts that were dependent upon either or both of the excitation amplitude and trap pressure (Collings, B. A.; Douglas, D. J. J. Am,. Soc. Mass Spectrom., 2000, 11, 1016-1022). The extent of this dependency was determined by examining the effects of each parameter using an ion trajectory simulator. The simulations indicated that it is the change in excitation amplitude that is mostly responsible for the resonance shifts with a minor dependency upon the trapping pressure. It was found that the higher excitation amplitudes required to observe the higher order resonances resulted in greater shifts relative to the theoretical resonances predicted for an excitation amplitude of zero volts. The nature of these shifts can be understood by examining the equations of motion for an ion trapped in a quadrupolar potential during the excitation process. Rearrangement of the equations of motion lead to a Mathieu stability diagram in which the coordinate and ordinate variables are dependent upon the excitation frequency and amplitude. In such a diagram the resonances occur in the regions of instability. The calculated resonance shifts showed good correlation with the experimental and simulation results.     

Radial stratification of ions as a function of mass to charge ratio in collisional cooling radio frequency multipoles used as ion guides or ion traps

Collisional cooling in radio frequency (RF) ion guides has been used in mass spectrometry as an intermediate step during the transport of ions from high pressure regions of an ion source into high vacuum regions of a mass analyzer. Such collisional cooling devices are also increasingly used as 'linear', two-dimensional (2D) ion traps for ion storage and accumulation to achieve improved sensitivity and dynamic range. We have used the effective potential approach to study m/z dependent distribution of ions in the devices. Relationships obtained for the ideal 2D multipole demonstrate that after cooling the ion cloud forms concentric cylindrical layers, each of them composed of ions having the same m/z ratio; the higher the m/z, the larger is the radial position occupied by the ions. This behavior results from the fact that the effective RF focusing is stronger for ions of lower m/z, pushing these ions closer to the axis. Radial boundaries of the layers are more distinct for multiply charged ions, compared to singly charged ions having the same m/z and charge density. In the case of sufficiently high ion density and low ion kinetic energy, we show that each m/z layer is separated from its nearest neighbor by a radial gap of low ion density. The radial gaps of low ion population between the layers are formed due to the space charge repulsion. Conditions for establishing the m/z stratified structure include sufficiently high charge density and adequate collisional relaxation. These conditions are likely to occur in collisional RF multipoles operated as ion guides or 2D ion traps for external ion accumulation. When linear ion density increases, the maximum ion cloud radius also increases, and outer layers of high m/z ions approach the multipole rods and may be ejected. This 'overfilling' of the multipole capacity results in a strong discrimination against high m/z ions. A relationship is reported for the maximum linear ion density of a multipole that is not overfilled.     

Quadrupole excitation of ions in linear quadrupole ion traps with added octopole fields

Modeling and experimental studies of quadrupole excitation of ions in linear quadrupole traps with added octopole fields are described. An approximate solution to the equations of motion of ions trapped in a quadrupole with added octopole and dodecapole fields, with quadrupole excitation and damping is given. The solutions give the steady-state or stationary amplitudes of oscillation with different excitation frequencies. Trajectory calculations of the oscillation amplitudes are also presented. The calculations show that there can be large changes in the amplitude of ion oscillation with small changes in excitation frequency, on both the low and high-frequency sides of a resonance. Results of experiments with quadrupole excitation of reserpine ions in linear quadrupole traps with 2.0%, 2.6%, and 4.0% added octopole fields are given. It is found that as the excitation frequency is changed, two resonances are generally observed, which are attributed to the motion in the x and y directions. The two resonances can have quite different intensities. Sudden jumps or sharp sided resonances are not observed, although in some cases asymmetric resonances are seen. The calculated frequency differences between the two resonances are in approximate agreement with the experiments.     

Method for improved secondary ion yields in cluster secondary ion mass spectrometry

A method to increase useful yields of organic molecules is investigated by cluster secondary ion mass spectrometry (SIMS). Glycerol drops were deposited onto various inkjet‐printed arrays and the organic molecules in the film were rapidly incorporated into the drop. The resulting glycerol/analyte drops were then probed with fullerene primary ions under dynamic SIMS conditions. High primary ion beam currents were shown to aid in the mixing of the glycerol drop, thus replenishing the probed area and sustaining high secondary ion yields. Integrated secondary ion signals for tetrabutylammonium iodide and cocaine in the glycerol drops were enhanced by more than a factor of 100 compared with an analogous area on the surface, and a factor of 1000 over the lifetime of the glycerol drop. Once the analyte of interest is incorporated into the glycerol microdrop, the solution chemistry can be tailored for enhanced secondary ion yields, with examples shown for cyclotrimethylenetrinitramine (RDX) chloride adduct formation. In addition, depositing localized glycerol drops may enhance analyte secondary ion count rates to high enough levels to allow for site‐specific chemical maps of molecules in complex matrices such as biological tissues. Published in 2010 by John Wiley & Sons, Ltd.     

Study of adduct ions of meso-phenyl-substituted tetrabenzoporphyrins by fast-atom bombardment mass spectrometry

Mass spectra of meso-phenyl-substituted tetrabenzoporphyrins were investigated by fast-atom bombardment mass spectrometry and tandem mass spectrometry. A cluster of adduct ions with mass-to-charge ratio values higher than the corresponding molecular ions of the porphyrins has been observed. The mass number differences among the series of cluster ions are constant depending on the para-phenyl substituents. Under certain conditions, dimers or trimers of molecular ions with low abundances have been detected. To trace the origin of the adduct ions, a series of experiments based on mass spectrometry have been carried out. The mass spectrum of tetrabenzoporphyrin showed no adduct ions with mass number differences of 90 even with the addition of phenylacetic acid. The mass spectrum of meso-tetraphenylte-trabenzoporphyrin ¹³C-labeled at the meso carbons showed adduct ions with mass number differences of 91. Product spectra of [2M + H]⁺ or [3M + H]⁺ of porphyrins exhibited adduct ions. All these results suggest that fragmentations of [2M + H]⁺ or [3M + H]⁺ may be one of the many possible routes to form the adduct ions, and the mass number differences among the series of these cluster ions should correspond to the benzyl group from the meso positions of meso-phenyl-substituted tetrabenzoporphyrins.     

Fragment-molecule adduct ion formation in the mass spectra of cyclic N-acetylamines and related nitramines

Mass spectra of seven related N-heterocyclics, introduced by direct exposure probe, were determined in electron impact (EI) and positive- and negative-ion chemical ionization (PCI and NCI) modes. Proton adducts were the predominant molecular ion species in the EI and PCI modes. In addition, a variety of fragment–molecule adduct ions were observed for each compound in one or more of the modes. The propensity of 1,3,5-trinitrohexahydro-1,3,5-triazine for fragment–molecule adduct formation was high in all three ionization modes. Fragmentation processes were documented by collision-induced dissociation experiments.     

Matrix‐free detection of intact ions from proteins in argon‐cluster secondary ion mass spectrometry

In the secondary ion mass spectrometry (SIMS) of organic substances, the molecular weight of the intact ions currently detectable is at best only as high as 1000 Da, which for all practical purposes prevents the technique from being applied to biomaterials of higher mass. We have developed SIMS instrumentation in which the primary ions were argon cluster ions having a kinetic energy per atom, controlled down to 1 eV. On applying this instrumentation to several peptides and proteins, the signal intensity of fragment ions was decreased by a factor of 10² when the kinetic energy per atom was decreased below 5 eV; moreover, intact ions of insulin (molecular weight (MW): 5808) and cytochrome C (MW: 12 327) were detected without using any matrix. These results indicate that fragmentation can be substantially suppressed without sacrificing the sputter yield of intact ions when the kinetic energy per atom is decreased to the level of the target's dissociation energy. This principle is fully applicable to other biomolecules, and it can thus be expected to contribute to applications of SIMS to biomaterials in the future. Copyright © 2009 John Wiley & Sons, Ltd.     

Liquid chromatography/mass spectrometric analysis of explosives: RDX adduct ions

In liquid chromatography/mass spectrometry (LC/MS) of 1,3,5-trinitro-1,3,5-triazacyclohexane (RDX), attachment of an anion to the analyte molecule is the major way of producing characteristic ions under electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI) conditions. The formation of RDX cluster ions in LC/MS and the origin of the clustering agents have been studied. In order to determine whether the clustering anions originate from self-decomposition of RDX in the source or from impurities in the mobile phase, isotopically labeled RDX ((13)C(3)-RDX and (15)N(6)-RDX) and isotopically labeled glycolic acid, acetic acid, ammonium formate and formaldehyde have been used in order to establish the composition and formation route of RDX adduct ions produced in ESI and APCI sources. The results showed that, in ESI, self-decomposition of RDX plays no role in adduct ion formation; rather, RDX clusters with formate, acetate, hydroxyacetate, and chloride anions present in the mobile phase as impurities at ppm levels. In APCI, part of the RDX molecules decompose yielding NO(2) (-) species which in turn cluster with a second RDX molecule producing abundant [M+NO(2)](-) cluster ions.