Performance of commercial soil laboratories in a proficiency test program in Brazil

A soil proficiency test (PT) was administered to 50 participant laboratories in which two sets of samples, consisting of 20 yearly PT samples and 5 ‘blind’ samples in clients’ names were analyzed for pH, organic matter, total acidity, extractable calcium, magnesium, potassium and phosphorus by the laboratories. Our objective was to determine whether laboratories take extra care to analyze clients’ samples as they do with regular PT samples. The analytical data were evaluated essentially by the procedure described in the international harmonized protocol for proficiency testing of analytical chemistry laboratories. Performance of participant laboratories was assessed by z-scores and summary z-scores statistics involving sum of squared z-scores interpreted as chi-square ( c_n² ) \left( {\chi_{n}^{2} } \right) distribution for zero-centered z-scores with unit variance. From 8 750 determinations, outliers and stragglers accounted for less than 2% of the entire data. Over 93% of the data were satisfactory, whereas between 2 and 4% were either unsatisfactory or questionable in both the PT and ‘blind’ tests. On the basis of sum of squared z-scores interpreted from c_n² \chi_{n}^{2} distribution table, between 30 and 40% of the laboratories had more than 90% probability of having their measurement data within the robust mean and standard deviation for each soil parameter, while another 30–42% of the laboratories had less than 50% probability of having measurement data within the robust mean and standard deviation. Overall, 21 laboratories (42%) were ranked in Class A either in the PT or ‘blind’ tests out of which 12 of them (57%) retained this ranking in both tests. Fourteen laboratories (28%) were ranked in Class C in either the PT or ‘blind’ tests with only 5 of them (36%) consistently ranking in this class in both tests.     

N-Cα bond cleavage of the peptide backbone via hydrogen abstraction

The specific cleavage of N-C_α bonds on the peptide backbone to form the so-called ‘c’ and ‘z + 2’ products, which can be used for the rapid determination of protein amino-acid sequences, has been examined to clarify the mechanism(s) that occur during hydrogen abstraction induced by bombardment with 337-nm laser photons in matrix-assisted laser desorption/ionization (MALDI) method. Intramolecular hydrogen abstraction, which results from the hydrogen(s) on the C_α or C_β carbon, did not occur with a deuterium-labeled dodecapeptide. To confirm a proposition that intermolecular hydrogen abstraction occurs between the peptide and the MALDI matrix, a deuterium dodecapeptide embedded in a deuterium 2,5-dihydroxybenzoic acid matrix at a molar ratio of 1:7000 was analyzed. The resulting deuterium c product ions suggested that c ions form via intermolecular hydrogen abstraction, although the results obtained did not deny any other possibilities such as intramolecular transfer of labile hydrogen. A mechanism for the N-C_α bond cleavage has been proposed that the formation of hypervalent radical species and subsequent prompt bond cleavages occur. The proposed mechanism successfully rationalizes the formation of both the z + 2 and the c product ions.     

Critical evaluation of laboratory performance from IAEA-452 (fish scallop) inter-comparison exercise results

The International Atomic Energy Agency Marine Environmental Laboratory (IAEA-MEL) conducted an intercomparison exercise for the “Trace elements and methyl mercury in fish scallop: IAEA-452” in 2009. The Neutron Activation Analysis (NAA) laboratory at PINSTECH, Pakistan took part in this exercise. Comparison with the IAEA results showed that of the 18 elements reported to the IAEA 7 had unacceptable z-scores while the data for two elements was questionable (2< |z-score| <3). Upon investigation it was discovered that the large number of elements having unacceptable z-scores was due to human error and the greater difficulty in analyzing biological samples which have low amounts of trace elements. Therefore selection of values corresponding to matrix matched reference materials (RMs), such as IAEA-436 and IAEA-407, and to non-interfering peaks the results obtained became comparable to the IAEA results with only the result for As having |z-score|> 3.     

Visualisation of proficiency test exercise results in Kiri plots

A novel graphical method (‘Kiri plots’) for the presentation of proficiency test exercise results is presented. The Kiri plot visualises the evaluation of the proficiency test results based on three statistical tests (the z score, the zeta score and the relative uncertainty outlier test) by defining six zones including a central “in agreement” zone.     

Determination of ethylphenols in wine by in situ derivatisation and headspace solid-phase microextraction–gas chromatography–mass spectrometry

Contamination by Brettanomyces is a frequent problem in many wineries that has a dramatic effect on wine aroma and hence its quality. The yeast Brettanomyces/Dekkera is involved in the formation of three important volatile ethylphenols—4-ethylphenol, 4-ethylguaiacol and 4-ethylcatechol—that transmit an unpleasant aroma to wine that has often been described as ‘medicinal’, ‘stable’ or ‘leather’. This study proposes an in situ derivatisation and headspace solid-phase microextraction– gas chromatography coupled to mass spectrometry method to determine the three ethylphenols in red Brettanomyces-tainted wines. The most important variables involved in the derivatisation (acetic anhydride and base concentration) and the extraction (extraction temperature and salt addition) processes were optimised by experimental design. The optimal conditions using 4 mL of wine in 20-mL sealed vials were 35 μL of acetic anhydride per millilitre of wine, 1 mL of 5.5% potassium carbonate solution and 0.9 g of sodium chloride and the extraction was performed with a divinylbenzene–carboxen–poly(dimethylsiloxane) fibre at 70 °C for 70 min. Then, the performance characteristics were established using wine samples spiked with the ethylphenols. For all compounds, the detection limits were below the odour threshold reported in the literature and they were between 2 and 17 μg L⁻¹ for 4-ethylguaiacol and 4-ethylphenol, respectively. Intermediate precision (as relative standard deviation) was acceptable, with values ranging from 0.3 to 12.1%. Finally, the method was applied in the analysis of aged Brettanomyces-tainted wines.     

Evaluation of laboratory performance in IMEP water interlaboratory comparisons

The aim of International Evaluation Programme (IMEP) is to present objectively the quality of chemical measurements. Participants in IMEP compare their reported measurement results with independent external certified reference values with demonstrated traceability and uncertainty, as evaluated according to international guidelines. Three major interlaboratory comparisons (ILCs), IMEP-6, IMEP-9 and IMEP-12, on trace elements in water were carried out from 1994 to 2000. Participants' results for Cd, Fe and Pb concentrations from these three different IMEP water ILCs were compared by means of suitable performance indicators. The performance evaluation criteria were set according to the requirements stated in the Council Directive 98/83/EC of 3 November 1998 on the quality of water intended for human consumption. Two different performance indicators were selected for evaluation of the individual participants' results: the commonly used z-score and the not so well-known E _n number. The group performance indicator is based on the variation of z-scores. To assess the individual measurement performance, not only the deviation of the reported measurement values from the certified reference value, but also criteria for maximum and minimum acceptable uncertainties were taken into account. The participants' performance is also reviewed by means of using a simple graphical tool, called “Naji-plots”.     

Software Lock Mass by Two-Dimensional Minimization of Peptide Mass Errors

Mass accuracy is a key parameter in proteomic experiments, improving specificity, and success rates of peptide identification. Advances in instrumentation now make it possible to routinely obtain high resolution data in proteomic experiments. To compensate for drifts in instrument calibration, a compound of known mass is often employed. This ‘lock mass’ provides an internal mass standard in every spectrum. Here we take advantage of the complexity of typical peptide mixtures in proteomics to eliminate the requirement for a physical lock mass. We find that mass scale drift is primarily a function of the m/z and the elution time dimensions. Using a subset of high confidence peptide identifications from a first pass database search, which effectively substitute for the lock mass, we set up a global mathematical minimization problem. We perform a simultaneous fit in two dimensions using a function whose parameterization is automatically adjusted to the complexity of the analyzed peptide mixture. Mass deviation of the high confidence peptides from their calculated values is then minimized globally as a function of both m/z value and elution time. The resulting recalibration function performs equal or better than adding a lock mass from laboratory air to LTQ-Orbitrap spectra. This ‘software lock mass’ drastically improves mass accuracy compared with mass measurement without lock mass (up to 10-fold), with none of the experimental cost of a physical lock mass, and it integrated into the freely available MaxQuant analysis pipeline ().     

A proficiency test scheme for the quality control of black tea and development of quality control material for internal quality control

A proficiency test (PT) was organized for quality control analysis of black tea. Test materials for the analyses of total content of powder tea, moisture, total ash, acid-insoluble ash, water-soluble ash, alkalinity of water-soluble ash, water extract, crude fiber and caffeine were sent to the participant laboratories (n:43) in 2009. The assigned value, standard deviation of the parameters and z-scores of the participant laboratories were calculated using the data reported by the participants. The percentage of the reported results for analytes was found to be ranged from 67.5 to 100%. Acceptable z-scores were achieved by 80.5–97.5% of the participant laboratories. More than 15% of unacceptable results were obtained for acid-insoluble ash and caffeine analyses. The quality control material for quality control analysis of black tea was developed from the remaining material.     

Linear ion trap fabricated using rapid manufacturing technology

This article presents the design, construction, and test results of a linear ion trap, fabricated using digital light processing (DLP), which is a low-cost 3D layer-based manufacturing technique. The ion trap was incorporated into a portable mass spectrometer system and experimental mass spectrum was obtained for methamphetamine (m/z 182), cocaine (m/z 304), and rhodamine B (m/z 443), with a maximum observed resolution (FWHM) of 260. For rhodamine B, tandem MS capability is also demonstrated. The mass range (and resolution at higher m/z) of the instrument is also demonstrated by spectrum obtained from Ultramark (m/z 1621). The spectra obtained for the DLP trap occur at a considerably lower rf voltage than a rectilinear ion trap of similar size, which is a consequence of the hyperbolic electrode geometry and, hence, smaller r ₀ in the DLP case. High mass range with low voltage operation is especially important with regard to ‘in the field’ applications requiring low power consumption for extended periods of operation.     

Enhanced characterization of singly protonated phosphopeptide ions by femtosecond laser-induced ionization/dissociation tandem mass spectrometry (fs-LID-MS/MS)

To develop an improved understanding of the regulatory role that post-translational modifications (PTMs) involving phosphorylation play in the maintenance of normal cellular function, tandem mass spectrometry (MS/MS) strategies coupled with ion activation techniques such as collision-induced dissociation (CID) and electron-transfer dissociation (ETD) are typically employed to identify the presence and site-specific locations of the phosphate moieties within a given phosphoprotein of interest. However, the ability of these techniques to obtain sufficient structural information for unambiguous phosphopeptide identification and characterization is highly dependent on the ion activation method employed and the properties of the precursor ion that is subjected to dissociation. Herein, we describe the application of a recently developed alternative ion activation technique for phosphopeptide analysis, termed femtosecond laser-induced ionization/dissociation (fs-LID). In contrast to CID and ETD, fs-LID is shown to be particularly suited to the analysis of singly protonated phosphopeptide ions, yielding a wide range of product ions including a, b, c, x, y, and z sequence ions, as well as ions that are potentially diagnostic of the positions of phosphorylation (e.g., ‘a _n+1–98’). Importantly, the lack of phosphate moiety losses or phosphate group ‘scrambling’ provides unambiguous information for sequence identification and phosphorylation site characterization. Therefore, fs-LID-MS/MS can serve as a complementary technique to established methodologies for phosphoproteomic analysis.     

Reference materials to evaluate measurement systems for the nutrient composition of foods: results from USDA’s National Food and Nutrient Analysis Program (NFNAP)

Over a 6.5-year period a total of 2554 values were reported by nine laboratories for 259 certified or reference nutrient concentrations in 26 certified reference materials (CRM) submitted to contract laboratories, blinded, as part of the qualifying process for analytical contracts and in the routine sample stream as part of the National Food and Nutrient Analysis Program. Each value was converted to a Z′-score, reflecting the difference from the assigned value related to the combined expected analytical uncertainty plus the uncertainty in the CRM value. Z′-scores >|3.0| were considered unacceptable. For some nutrients (Na, folate, dietary fiber, pantothenic acid, thiamin, tocopherols, carotenoids, monounsaturated, and polyunsaturated fatty acids), >20% of Z′-scores were >|3.0|. For total fat, vitamin C, and niacin >25% of Z′-scores were >|2.0|. Components for which CRM data were best (more than 90% of Z′-scores <|2.0|) were Mg, P, Mn, Se, and vitamin B12. In some cases deviations from assigned values were not uniform across laboratories and materials. For Na almost all high Z′-scores were for low-Na matrices, suggesting analytical problems related to concentration. Figure Z′-scores for vitamins in certified reference materials Disclaimer: Certain commercial equipment, instruments, or materials are identified in this paper in order to specify the experimental procedure adequately. Such identification is not intended to imply recommendation or endorsement by the National Institute of Standards and Technology, or the United States Department of Agriculture, nor is it intended to imply that the materials or equipment identified are necessarily the best available for the purpose.     

The architecture of Platonic polyhedral links

A new methodology for understanding the construction of polyhedral links has been developed on the basis of the Platonic solids by using our method of the ‘n-branched curves and m-twisted double-lines covering’. There are five classes of platonic polyhedral links we can construct: the tetrahedral links; the hexahedral links; the octahedral links; the dodecahedral links; the icosahedral links. The tetrahedral links, hexahedral links, and dodecahedral links are, respectively, assembled by using the method of the ‘3-branched curves and m-twisted double-lines covering’, whereas the octahedral links and dodecahedral links are, respectively, made by using the method of the ‘4-branched curves’ and ‘5-branched curves’, as well as ‘m-twisted double-lines covering’. Moreover, the analysis relating topological properties and link invariants is of considerable importance. Link invariants are powerful tools to classify and measure the complexity of polyhedral catenanes. This study provides further insight into the molecular design, as well as theoretical characterization, of the DNA polyhedral catenanes.     

Modulated-temperature thermomechanical analysis

By employing a ‘modulated-temperature’ heating programme composed of a series of heat-isotherm stages, it is possible to separate the change in dimensions of an oriented material during heating into two contributions: a thermally ‘reversing’ component which is due to linear thermal expansion and a ‘non-reversing’ part arising from relaxation to the disordered state on heating aboveT _g. Some preliminary results for biaxially drawn poly(ethylene terephthalate) film are presented. These experiments were carried out at the Thermal Methods & Conservation Science Laboratory, Department of Chemistry, Birkbeck College, University of London.     

Influence of shearing on impact polypropylene copolymer: Phase morphology,thermal and rheological behavior

The influences of shearing conducted by a Brabender rheometer on phase morphology,thermal and rheological behavior of a commercial impact polypropylene copolymer(IPC) were studied.The crystallization and melting traces show that short-time annealing at 210°C is unable to completely erase the influence of shearing on the samples.When the samples which were treated at a rotation speed of 80 r/min crystallize at a cooling rate of 10 K/min,their 7_cs and corresponding T_ms obviously rise with the increase of shearing time.Furthermore,the POM results reveal that the shearing can lead to the formation of shish-kebab and the shish-kebab amount is proportional to shearing time.The rheological measurement results show that the treated samples exhibit different G’~ωdependences.The ’second plateau’ appears when the sample is treated at a rotation speed of 60 r/min or 80 r/min for 10 min,and linear G’~ωdependence is observed at other rotation speeds.In addition,it is found that the appearance of the ’second plateau’ depends on the shearing time when the rotation speed is fixed. According to SEM observations,it is proposed that the ’second plateau’ of IPC samples should be ascribed to the aggregation of dispersion particles.     

Thermoanalytical behaviour of carbaryl and its copper(II) and zinc(II) complexes

Non-isothermal techniques, i.e. thermogravimetry (TG) and differential scanning calorimetry (DSC), have been applied to investigate the thermal behaviour of carbaryl (1-naphthyl-N-methylcarbamate = 1-Naph-N-Mecbm) and its complexes, M(1-Naph-N-Mecbm)₄X₂, where M = Cu, X = Cl, NO₃ and CH₃COO and M = Zn, X = Cl. Carbaryl and Zn(1-Naph-N-Mecbm)₄Cl₂ complex exhibit two-stage thermal decomposition while the copper(II) complexes exhibit three and four-stage decomposition in their TG curves. The nature of the metal ion has been found to play highly influential role on the nature of thermal decomposition products as well as energy of activation ‘E*’. The presence of different anions does not seem to alter the thermal decomposition patterns. The complexes display weak to medium intensity exothermic and endothermic DSC curves, while the free ligand exhibits two endothermic peaks. The kinetic and thermodynamic parameters namely, the energy of activation ‘E*’, the frequency factor ‘A’ and the entropy of activation ‘S*’ etc. have been rationalized in relation to the bonding aspect of the carbaryl ligand. The nature and chemical composition of the residues of the decomposition steps have been studied by elemental analysis and FTIR data.     

A new form of MgTa2O6 obtained by the molten salt method

Using molten salt route (with NaCl/KCl as the salt) we have been able to synthesize a new form of magnesium tantalate at 850°C. Powder X-ray diffraction data could be inde_xed on an orthorhombic unit cell with lattice parameters, ‘a’ = 15.36(1) ?, ‘b’ = 13.38(1) ? and ‘c’ = 12.10(1) ?. High resolution transmission electron microscopy and electron diffraction studies confirm the results obtained by X-ray studies. Energy dispersive X-ray spectroscopy helps ascertain the composition of MgTa₂O₆. The title compound shows a dielectric constant of ∼24 with a low dielectric loss of 0.006 at 100 kHz at room temperature. Dielectric constant is nearly unchanged with rise in temperature while the loss shows a very marginal increase (0.007 at 300°C). Dedicated to Prof J Gopalakrishnan on his 62nd birthday.     

Interpretation of interlaboratory comparison results to evaluate laboratory proficiency

Guidelines are given for the evaluation of proficiency test (PT) results in order to increase the effectivity of PT participation. For better understanding, some statistical background is given along with some examples to show the effects of the choices made by the PT provider. The calculation method of the assigned value and the selection of the standard deviation both affect the z-score that is used by the participating laboratory to judge the quality of its performance in the PT. Therefore, the participating laboratory is advised to use the PT results with care and, if necessary, to recalculate the z-scores. Finally, advice is given on how not to follow up bad PT results along with some valuable steps that could be part of an effective follow-up procedure.     

Photoinduced Electron Transfer Supramolecular Fluorescent Switch of Mono-6-p-nitrobenzoyl-β-cyclodextrin with Porphyrin Derivative

A novel supramolecular fluorescence switch system consisted of a perfect host/electron-acceptor mono-6-p-nitrobenzoyl-β-cyclodextrin (p-NBCD) and an ideal guest/electron-donor (adamantane-C₄-porphyrin) was reported. The ‘ON’ and ‘OFF’ states of fluorescence switch were droved by solvent polarity.     

Measurement of small quantities: further observations on Bayesian methodology

This article discusses the measurement of the sum of small positive quantities each estimated in separate analyses. It extends criticism recently given of ‘objective Bayesian’ methodology (Accred Qual Assur 15:181–188, 2010) and identifies two troublesome effects: the inherent bias in an analysis for a single quantity is compounded when the measurand is the sum of such quantities, and the precaution of overestimating measurement variability can actually make the resulting interval of measurement uncertainty less reliable! Unacceptable results are obtained. A cause of this behavior is identified, and a distinction between ‘objective’ and ‘subjective’ Bayesian statistics is discussed.