Use of synchrotron-radiation-based FTIR imaging for characterizing changes in cell contents

FTIR imaging of individual cells is still limited by the low signal-to-noise ratio obtained from analysis of such weakly absorbing organic matter when using a Globar IR source. In this study, we used FTIR imaging with a synchrotron radiation source and a focal plane array detector to determine changes in the cellular contents of cryofixed cells after culture for 48 h on Si(3)N(4) substrate. Several spectral differences were observed for cells deprived of glucose compared with control cells: a lower amide I-to-amide II ratio (P < 0.01); a different secondary structure profile of proteins (obtained from amide I spectral region curve fitting), with a significant increase in non-ordered structure components (P < 0.01); and a higher ν(C = C-H)/ν(as)(CH(3)) absorption ratio (P < 0.01), suggesting increased unsaturation of fatty acyl chains. Therefore, our study has shown that FTIR imaging with a synchrotron radiation source enables determination of several spectral changes of individual cells between two experimental conditions, which thus opens the way to cell biology studies with this vibrational spectroscopy technique.     

Differentiation of individual human mesenchymal stem cells probed by FTIR microscopic imaging

Objective of this study is the novel application of Fourier transform infrared (FTIR) microscopic imaging to identify the differentiation state of individual human mesenchymal stem cells with or without osteogenic stimulation. IR spectra of several hundred single cells with lateral resolution of 5-10 microm were recorded using a FTIR imaging spectrometer coupled to a microscope with a focal plane array detector. A classification model based on linear discriminant analysis was trained to distinguish four cell types by their IR spectroscopic fingerprint. Without stimulation two cell types dominated, showing low or high levels of glycogen accumulation at the cell periphery. After stimulation, the protein composition in the cells changed and some cells started expressing calcium phosphate salts such as octacalciumphosphate, a precursor of the bone constituent hydroxyapatite. Few cells were identified which remained in their non-stimulated state. This study demonstrated for the first time that FTIR microscopic imaging can probe stem cell differentiation at the single cell level rapidly, non-destructively and with minimal preparation.     

At the solid/liquid interface: FTIR/ATR--the tool of choice

For the last 7 years, we have been researching various aspects of the Bayer process. Predominant among these has been the surface chemistry of Bayer process solids. To this end, we have been using Fourier transform infrared (FTIR) attenuated total reflection (ATR) spectroscopy for in situ studies of the surfaces of the Bayer process solids sodium oxalate and aluminium trihydroxide under extreme (high ionic strength, high pH), Bayer-like conditions. FTIR/ATR is one of the few techniques currently available to scientists wishing to explore solid/liquid interfacial phenomena in situ. Using this investigative technique, information regarding the nature of adsorbed species can be readily acquired, with details concerning adsorbate orientation and adsorption/desorption equilibria, speciation, mechanisms and kinetics obtainable. Not surprisingly, FTIR/ATR has become one of the tools of choice for those wishing to explore the solid/liquid interface, and the body of literature available on the subject has been steadily growing over the last 10-15 years. This review addresses the current state of knowledge in the area of FTIR/ATR with respect to interfacial spectroscopy, as well as introducing some of the more fundamental theoretical and practical aspects of the technique. Particular emphasis is placed upon applied interfacial research. In writing this review, we draw on a considerable amount of expertise in the use of FTIR/ATR in interfacial studies (in particular, the practical considerations involved), as well as a large and comprehensive literature database focussing primarily on the investigation of interfacial processes using the FTIR/ATR technique.     

Vibrational spectroscopy differentiates between multipotent and pluripotent stem cells

Over the last few years, there has been an increased interest in the study of stem cells in biomedicine for therapeutic use and as a source for healing diseased or injured organs/tissues. More recently, vibrational spectroscopy has been applied to study stem cell differentiation. In this study, we have used both synchrotron based FTIR and Raman microspectroscopies to assess possible differences between human pluripotent (embryonic) and multipotent (adult mesenchymal) stem cells, and how O(2) concentration in cell culture could affect the spectral signatures of these cells. Our work shows that infrared spectroscopy of embryonic (pluripotent) and adult mesenchymal (multipotent) stem cells have different spectral signatures based on the amount of lipids in their cytoplasm (confirmed with cytological staining). Furthermore, O(2) concentration in cell culture causes changes in both the FTIR and Raman spectra of embryonic stem cells. These results show that embryonic stem cells might be more sensitive to O(2) concentration when compared to mesenchymal stem cells. While vibrational spectroscopy could therefore be of potential use in identifying different populations of stem cells further work is required to better understand these differences.     

Review of FTIR microspectroscopy applications to investigate biochemical changes in C. elegans

Caenorhabditis elegans nematode has emerged as a model organism paving the ways for multidisciplinary research in biomedical, environmental toxicology, aging, metabolism, obesity, and drug discovery. The wide range of applications of this model organism are attributed to C. elegans’ unique features: C. elegans are inexpensive, easy to grow and maintain in a laboratory, has a short lifespan, and has a small body size. With this increased interest, the need for analytical techniques to assess the biochemical information on intact worms continues to grow. Fourier Transform Infrared (FTIR) microspectroscopy is considered as a powerful technique that can be used to determine the chemical structure and composition of various materials, including biological samples. Furthermore, the development of focal plane array detectors has made this technique attractive to study complex biological systems such as whole nematodes. This review focuses on the use of FTIR microspectroscopy to study C. elegans. The first published work on the use of FTIR microspectroscopy to study a complex whole animal was reported in 2004. Since then, very few other studies were carried out. The objective of this review is to summarize work conducted to date using FTIR microspectroscopy to study nematodes and to discuss the information that can be gained by using this technique. This could allow scientists to add this technique to the arsenal of techniques already in use for C. elegans studies.     

A quantitative approach to studying structures and orientation at self-assembled monolayer/fluid interfaces

Self-assembled monolayers (SAMs) have become a standard tool for exploring surface interactions. Although well characterized, SAMs are known to undergo structural and conformational changes in the presence of solution, yet the ability to quantify these changes remains an obstacle due to limited analytical techniques. In this study, we determine changes in structure and conformation of CH3, OH, and COOH terminated hexadecanethiols on gold in water by means of a new technique known as evanescence reflection spectroscopy. This FTIR application, in conjunction with a semiempirical formalism, is capable of providing both qualitative and quantitative understanding of the molecular structure and orientation at the solid/liquid interface.     

中红外光纤光谱法在化学反应过程中的应用

将傅里叶变换中红外光纤光谱技术分别用于液相反应体系和固液反应体系的在线监测. 在液相反应体系中, 监测了环烷酸皂化时形成微乳的过程, 初步了解了皂化环烷酸时微乳液的形成机制; 在固液反应体系中, 监测了邻苯二甲酸与氯化铕的配位反应过程, 探索了络合物的生成过程及组分间的相互作用. 该技术有望发展成为一种实时监测化学反应过程的新方法.     

Synthesis,Characterization and Antimicrobial Activity of Zinc Oxide Nanoparticles against Selected Waterborne Bacterial and Yeast Pathogens

The disinfection of wastewater using nanoparticles (NPs) has become a focal area of research in water treatment. In this study, zinc oxide (ZnO) NPs were synthesized using the microwave heating crystallization technique and characterized using transmission electron microscopy (TEM), Fourier transform infrared (FTIR) spectroscopy and X-ray diffraction (XRD). Qualitative well diffusion and quantitative minimum inhibitory concentration (MIC) tests were conducted to determine the antimicrobial activity of ZnO NPs against selected waterborne pathogenic microbes. FTIR spectral studies confirmed that the binding of urea with Zn occurs through Zn–O stretching. XRD confirmed the crystallized identity in a hexagonal ZnO wurtzite-type structure. The formation of zones of inhibition and low MIC values in the antimicrobial analysis were indicative of the effective antimicrobial activity of zinc oxide nanoparticles against the test microorganisms. The application of metallic nanoparticles in water treatment could curb the spread of waterborne microbial diseases.     

The characterization of biomolecular secondary structures by surface plasmon resonance

Recently there has been considerable interest in using surface plasmon resonance (SPR) for the measurement of conformational changes of immobilized biomolecules that are induced by an exogenous analyte. While a number of studies have shown the analytical utility of such measurements, there has been no report which characterizes the specific secondary structure that actuates the change in SPR signal. The use of SPR to indicate the type of secondary structure present in two immobilized polypeptides, poly-L-lysine (PL) and poly-L-glutamic acid (PGA), and a globular protein, concanavalin A (Con A) is described in this report. The PL, PGA and Con A were modified with N-succinimidyl 3-(2-pyridyldithiol) propionate (SPDP) to introduce disulfide groups to facilitate the attachment onto gold-coated surfaces via self-assembly. Ethanol and 2,2,2-trifluoroethanol (TFE) were used to induce changes in the secondary structure of the immobilized polypeptides and the protein respectively. Using both circular dichroism (CD) and Fourier transform infrared (FTIR) spectroscopies, it has been demonstrated that it is possible to correlate the signal changes observed in SPR to the secondary conformation of the biomolecule. Both CD and FTIR showed that a decrease in SPR signal corresponded to a high content of beta, turn or unordered structures while an increase corresponded to a high alpha-helical content. The sensitivity of the SPR technique is comparable to that obtained in solution with CD and FTIR spectroscopies. These results are the first demonstration that SPR can be used to characterize secondary structures. There is potential, therefore, for SPR to be used as a technique to study secondary conformational changes of immobilized polypeptides and proteins.     

Application of FTIR imaging to detect dietary induced biochemical changes in brown and white adipocytes

Fourier Transform Infrared microspectroscopy Imaging (FTIR imaging) has powerful advantages when used as a complementary technique to histopathological investigations. The common histopathological investigations use a number of chemical fixatives and deparaffinizing agents that alter lipid profiles of biological tissues, particularly in lipid-rich adipose tissues. An infrared image is made of a multitude of pixels. For each pixel, identified by its (x,y) coordinates, corresponds an FTIR spectrum that reveals the chemical composition at this specific location. As a result, it allows biochemical analysis in selective locations within samples. Moreover, functional group distribution maps can be used as a staining free technique for spatial characterization of different biomolecules. Though FTIR imaging has been reported as a powerful approach to characterize adipose tissues, the biochemical heterogeneity within adipose tissues has not been acknowledged. This study shows relative changes in brown and white adipose tissues of mice due to consumption of high-fat diet. In particular, we report cryosectioning of adipose tissues, image acquisition, and different image analysis methods to evaluate dietary induced changes in lipids stored in brown and white adipocytes. Since biochemical changes in adipocytes constitute an important component in obesity investigations, this study shows the potential use of FTIR imaging to compare relative biochemical changes associated with dietary interventions.     

Pyrolytic alkylation-gas chromatography-mass spectrometry of model polymers Further insights into the mechanism and scope of the technique

The mechanism of the high-temperature hydrolysis and alkylation with tetraalkylammonium hydroxides of bio- and geopolymers has been approached mainly by studying the behaviour of single standard compounds. In the present work, we have applied this technique to three polymers of known structure, i.e. suberin, polycitraconic acid (PCA) and a lignin dehydrogenase polymer (DHP), related respectively to natural polyesters, fulvic acids and lignins, in order to get new insight into the reaction mechanisms. As further application of the technique, the case study of the lignin signature during the coalification process has been analyzed by pyrolysis-butylation of humic acids extracted from two peat and lignite samples.     

Fourier Transform Infrared Studies of Polymeric Materials

The recent introduction of Fourier Transform Infrared (FTIR) spectrometers that are operable over the entire IR frequency range has revitalized the field of IR spectroscopy. IR studies of complex polymeric materials that were impossible, or at least extremely difficult using conventional dispersive spectrometers, are now readily accomplished. In this review of the application of FTIR to the study of polymeric materials, we initially present a brief critical comparison of the FTIR and dispersive spectrometers followed by a discussion of the results that have been published to date.     

Spectral and thermal characterization of grown organic single crystal

The growth of semicarbazone of p-hydroxy benzaldehyde (SPHB) single crystal by slow evaporation solution growth technique is reported in this article. The grown crystal was subjected to powder XRD study to identify the crystalline nature. Single crystal XRD study was done to measure unit cell parameters and to confirm the crystal structure. In the presence of various functional groups of SPHB was identified by FTIR spectrum. Its optical behavior was examined by UV?CVis?CNIR spectrum and the crystal was found to have transparency in the region between 245 and 1100?nm. Thermal properties of the crystal were investigated using thermogravimetric and differential thermal analysis (TG-DTA), which indicated that the melting of the material occurred before decomposition. The nonlinear optical (NLO) property was tested by Kurtz?CPerry powder technique for second harmonic generations.     

Earth pigments in painting: characterisation and differentiation by means of FTIR spectroscopy and SEM-EDS microanalysis

Analytical characterisation of natural earths (ochres, siennas, umbers and green earths) has been carried out using Fourier transform infrared spectroscopy (FTIR) and scanning electron microscopy (SEM) coupled to an energy dispersive X-Ray spectrometer (EDS). The study of these pigments, which are found in works of art, is very important since it can shed light on their source or the pictorial technique used. FTIR spectroscopy is suitable for the identification and differentiation of ochres and siennas. According to the matrix of the sample, FTIR allows the classification of ochres into ochres containing kaolinite and ochres containing sulphate. One of the goals of this research has been to establish a relationship between the matrix and the source of the samples tested. SEM-EDS is probably a better technique than FTIR for characterising umbers and green earths since they do not exhibit significant differences when FTIR studies are performed.     

Living in a transient world: ICP-MS reinvented via time-resolved analysis for monitoring single events

After 40 years of development, inductively coupled plasma-mass spectrometry (ICP-MS) can hardly be considered as a novel technique anymore. ICP-MS has become the reference when it comes to multi-element bulk analysis at (ultra)trace levels, as well as to isotope ratio determination for metal(loid)s. However, over the last decade, this technique has managed to uncover an entirely new application field, providing information in a variety of contexts related to the individual analysis of single entities (e.g., nanoparticles, cells, or micro/nanoplastics), thus addressing new societal challenges. And this profound expansion of its application range becomes even more remarkable when considering that it has been made possible in an a priori simple way: by providing faster data acquisition and developing the corresponding theoretical substrate to relate the time-resolved signals thus obtained with the elemental composition of the target entities. This review presents the underlying concepts behind single event-ICP-MS, which are needed to fully understand its potential, highlighting key areas of application (e.g., single particle-ICP-MS or single cell-ICP-MS) as well as of future development (e.g., micro/nanoplastics).

This work presents the basic concepts behind single event-ICP-MS, highlighting key areas of application (single particle-ICP-MS or single cell-ICP-MS) as well as of future development (micro/nanoplastics).     

Nanoscale chemical structure variations in nano-patterned and nano-porous low-k dielectrics: A comparative photothermal induced resonance and infrared spectroscopy investigation

The recent development of the photothermal induced resonance (PTIR) technique has enabled atomic force microscope based infrared (AFM-IR) spectroscopy and imaging to be achieved at the nanometer scale. However, a direct correspondance between PTIR/AFM-IR and more traditional Fourier transform IR (FTIR) spectroscopy has been prohibited for nanometer scale features due to Rayleigh diffraction constraints that limit the latter to few micron spatial resolution. In this regard, we have overcome this challenge by fabricating 1 cm² arrays of 90 nm wide fins in a nano-porous low dielectric constant (i.e. low-k) amorphous hybrid inorganic-organic silicate material using standard nano-electronic fabrication techniques. With these structures, we demonstrate both a general correspondance between AFM-IR, FTIR, and Germanium attenuated total reflection (GATR) IR spectroscopy, as well as differences in the sensitivities that these techniques exhibit to the nanoscale variations in chemical structure induced in the low-k dielectric by the nanopatterning method. To further illustrate the sensitivity of AFM-IR to changes in chemical structure with nanometer resolution, the nanopatterned low-k dielectric was exposed to additional oxidizing plasma ash cleans post patterning. Focusing on the Si-CH₃ deformation band at ∼1275 cm⁻¹, both the AFM-IR, FTIR and GATR measurements show a clear reduction in the concentration of terminal methyl groups in the low-k dielectric as the oxidation potential of the plasma ash clean increased. These results further establish the power of AFM-IR to perform nanoscale IR spectroscopy and demonstrates a stronger correspondance between AFM-IR and well-known micron scale IR techniques such as FTIR and GATR.     

Understanding the structural properties of a dendrimeric material directly from powder X-ray diffraction data

Complete structure determination of an early-generation dendrimeric material has been carried out directly from powder X-ray diffraction data, using the direct-space genetic algorithm technique for structure solution followed by Rietveld refinement. This work represents the first application of modern direct-space techniques for structure determination from powder X-ray diffraction data in the case of a dendrimeric material and paves the way for the future application of this approach to enable complete structure determination of other dendrimeric materials that cannot be prepared as single crystal samples suitable for single crystal X-ray diffraction studies.     

Spectroscopic characterization of human and mouse primary cells,cell lines and malignant cells

Fourier transform infrared (FTIR) spectroscopy is currently being developed as a new optical approach to the diagnosis and characterization of cell or tissue pathology. The advantage of FTIR microspectroscopy over conventional FTIR spectroscopy in the diagnosis of malignancies is that it facilitates inspection of restricted regions of the cell culture or tissue. In this study, we set out to evaluate FTIR microspectroscopy as a diagnostic tool for identifying retrovirus-induced malignancies. Our study showed significant and consistent differences between cultures of different types of cells of both mouse and human origin, i.e. primary fibroblast cells (one to two passages in cell culture), fibroblast cell lines and malignant cells transformed by murine sarcoma virus. An impressive decrease in the levels of phosphate and other metabolites was seen in malignant cells compared with primary cells. The levels of these metabolites in the cell lines were significantly lower than in the primary cells but higher than in the malignant cells. In addition, the peak attributed to the PO2- symmetric stretching mode at 1082 cm(-1) in primary cells shifted significantly to 1085 cm(-1) for the cell line and to 1087 cm(-1) for the malignant cells. These differences taken together with differences in the shapes of various bands throughout the spectrum strongly support the possibility of developing FTIR microspectroscopy for the detection and study of malignant--and possibly premalignant--cells.     

Proteins in action monitored by time-resolved FTIR spectroscopy.

In the post genome era proteins coming into the focus of life sciences. X-ray structure analysis and NMR spectroscopy are established methods to determine the geometry of proteins. In order to determine the molecular reaction mechanism of proteins, time-resolved FTIR (trFTIR) difference spectroscopy emerges as a valuable tool. In this Minireview we describe the trFTIR difference spectroscopy and show its application on the light-driven proton pump bacteriorhodopsin (bR), the photosynthetic reaction center and the GTPase Ras, which is crucial in signal transduction. The main principles of the technique are presented, including a summary of triggering techniques, scan modes and analysis.     

Correlated Secondary Ion Mass Spectrometry-Laser Scanning Confocal Microscopy Imaging for Single Cell-Principles and Applications

Secondary ion mass spectrometry (SIMS) as a powerful surface analysis technique has been widely applied in semiconductor industry and geology research. Recently, with the development of instrumental technology, SIMS is attracting more and more attention in life sciences. SIMS can provide surface MS spectra, 2D/3D chemical images and depth profiling of substances simultaneously. The minimal lateral resolution of 2D SIMS imaging is 80–100 nm, and the longitudinal resolution of 3D SIMS imaging is about 1–5 nm. However, owing to lack of specific ions to render the structures of organelles, SIMS imaging for single cells still have great challenges. Optical microscopy, in particular laser scanning confocal microscopy (LSCM), has been emerged to be an indispensable technique for single cell imaging and can obtain high spatial 2D/3D imaging to visualize the structures of organelles. Thus, the combinational use of SIMS and LSCM, which takes advantages of SIMS for molecular imaging and LSCM for morphological imaging, has greatly extended the application of SIMS imaging and ensured its accuracy at single cells level, providing novel insights into better understanding of the biological events inside cells. In this review, we focus on the development and application of SIMS imaging and the correlated SIMS and LSCM imaging in the research of cell biology and drug discovery. We anticipate that the combinational use of SIMS and LSCM imaging has promising future in biomedicine and life sciences.