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1.
Bethany Lowe Alejandro L. Cardona Juana Salas Andras Bodi Maxi A. Burgos Paci Paul M. Mayer 《Journal of mass spectrometry : JMS》2022,57(6):e4868
The thermal dissociation of the atmospheric constituent methyl formate was probed by coupling pyrolysis with imaging photoelectron photoion coincidence spectroscopy (iPEPICO) using synchrotron VUV radiation at the Swiss Light Source (SLS). iPEPICO allows threshold photoelectron spectra to be obtained for pyrolysis products, distinguishing isomers and separating ionic and neutral dissociation pathways. In this work, the pyrolysis products of dilute methyl formate, CH3OC(O)H, were elucidated to be CH3OH + CO, 2 CH2O and CH4 + CO2 as in part distinct from the dissociation of the radical cation (CH3OH+• + CO and CH2OH+ + HCO). Density functional theory, CCSD(T), and CBS-QB3 calculations were used to describe the experimentally observed reaction mechanisms, and the thermal decomposition kinetics and the competition between the reaction channels are addressed in a statistical model. One result of the theoretical model is that CH2O formation was predicted to come directly from methyl formate at temperatures below 1200 K, while above 1800 K, it is formed primarily from the thermal decomposition of methanol. 相似文献
2.
Bethany Lowe;Alejandro L. Cardona;Juana Salas;Andras Bodi;Paul M. Mayer;Maxi A. Burgos Paci; 《Journal of mass spectrometry : JMS》2024,59(2):e5004
Imaging photoelectron photoion coincidence (iPEPICO) spectroscopy and tandem mass spectrometry were employed to explore the ionisation and dissociative ionisation of phenyl formate (PF) and phenyl chloroformate (PCF). The threshold photoelectron spectra of both compounds are featureless and lack a definitive origin transition, owing to the internal rotation of the formate functional group relative to the benzene ring, active upon ionisation. CBS-QB3 calculations yield ionisation energies of 8.88 and 9.03 eV for PF and PCF, respectively. Ionised PF dissociates by the loss of CO via a transition state composed of a phenoxy cation and HCO moieties. The dissociation of PCF ions involves the competing losses of CO (m/z 128/130), Cl (m/z 121) and CO2 (m/z 112/114), with Cl loss also shown to occur from the second excited state in a non-statistical process. The primary CO- and Cl-loss fragment ions undergo sequential reactions leading to fragment ions at m/z 98 and 77. The mass-analysed ion kinetic energy (MIKE) spectrum of PCF+ showed that the loss of CO2 occurs with a large reverse energy barrier, which is consistent with the computationally derived minimum energy reaction pathway. 相似文献
3.
Dr. Hidde Elferink Wouter A. Remmerswaal Kas J. Houthuijs Oscar Jansen Dr. Thomas Hansen Prof. Dr. Anouk M. Rijs Dr. Giel Berden Dr. Jonathan Martens Prof. Dr. Jos Oomens Prof. Dr. Jeroen D. C. Codée Dr. Thomas J. Boltje 《Chemistry (Weinheim an der Bergstrasse, Germany)》2022,28(63):e202201724
Uronic acids are carbohydrates carrying a terminal carboxylic acid and have a unique reactivity in stereoselective glycosylation reactions. Herein, the competing intramolecular stabilization of uronic acid cations by the C-5 carboxylic acid or the C-4 acetyl group was studied with infrared ion spectroscopy (IRIS). IRIS reveals that a mixture of bridged ions is formed, in which the mixture is driven towards the C-1,C-5 dioxolanium ion when the C-5,C-2-relationship is cis, and towards the formation of the C-1,C-4 dioxepanium ion when this relation is trans. Isomer-population analysis and interconversion barrier computations show that the two bridged structures are not in dynamic equilibrium and that their ratio parallels the density functional theory computed stability of the structures. These studies reveal how the intrinsic interplay of the different functional groups influences the formation of the different regioisomeric products. 相似文献
4.
We report a novel mechanism for the interconversion of 2‐hydroxypropanal with its more‐stable ketone isomer hydroxyacetone. Reaction proceeds via concerted transfer of two H atoms, requires a barrier of only ～40 kcal mol?1, bypasses the enediol intermediate, and is general for α‐hydroxy carbonyls. A similar isomerization mechanism is shown to persist for β, γ, and δ‐hydroxy carbonyls; these compounds are skeletal forms of the monosaccharides and this work, therefore, discloses the gas‐phase mechanism for aldose‐ketose isomerization. As an example, the isomerization of glyceraldehyde to dihydroxyacetone is shown to proceed via this mechanism with a barrier of 31 kcal mol?1. Rate coefficients and thermochemical properties are reported for the isomerization of 2‐hydroxypropanal and hydroxyacetone for use in detailed kinetic models. Additionally, RRKM theory k (E ) values for this reaction suggest that it may transpire in the troposphere following solar excitation. 相似文献
5.
Dr. Saumen Chakraborty Julian Reed Matthew Ross Dr. Mark J. Nilges Igor D. Petrik Dr. Soumya Ghosh Prof. Dr. Sharon Hammes‐Schiffer Prof. Dr. J. Timothy Sage Prof. Dr. Yong Zhang Prof. Dr. Charles E. Schulz Prof. Dr. Yi Lu 《Angewandte Chemie (International ed. in English)》2014,53(9):2417-2421
A major barrier to understanding the mechanism of nitric oxide reductases (NORs) is the lack of a selective probe of NO binding to the nonheme FeB center. By replacing the heme in a biosynthetic model of NORs, which structurally and functionally mimics NORs, with isostructural ZnPP, the electronic structure and functional properties of the FeB nitrosyl complex was probed. This approach allowed observation of the first S=3/2 nonheme {FeNO}7 complex in a protein‐based model system of NOR. Detailed spectroscopic and computational studies show that the electronic state of the {FeNO}7 complex is best described as a high spin ferrous iron (S=2) antiferromagnetically coupled to an NO radical (S= 1/2) [Fe2+‐NO.]. The radical nature of the FeB‐bound NO would facilitate N? N bond formation by radical coupling with the heme‐bound NO. This finding, therefore, supports the proposed trans mechanism of NO reduction by NORs. 相似文献
6.
Shaghayegh Hamzehlou Fernando Ruipérez 《Journal of polymer science. Part A, Polymer chemistry》2022,60(13):1988-1999
One of the key points in the design of vitrimers is controlling the associative exchange kinetics. One common chemistry used in vitrimers is based on the dynamic amine exchange reaction of vinylogous acyl compounds in presence of free amine. Understanding the reaction mechanism is essential to assist the optimization of the reaction conditions as well as the molecular structure of the reactant compounds in the pursuit of new materials. In this work, a computational study has been performed to explore different reaction mechanisms in neutral, acidic and in basic conditions or in the presence of Lewis acids, as well as the effect of chemical modifications in the exchange reaction. The results reveal that the formation of hydrogen bonds are a key feature and that the vinylogous urea improves the transamination compared to vinylogous urethane. The esteric hindrance of the amino group in the vinylogous compound also plays an important role. Finally, the nature of the free amine can improve the reactivity by equilibrating two contrary effects: the basicity favors the nucleophilic attack and the conjugated acidity favors the protonation. The findings of this theoretical work shed light in the design of new vitrimers with controlled exchange kinetics by chemical modifications. 相似文献
7.
Kailai Lin Patrick TomHon Dr. Sören Lehmkuhl Dr. Raul Laasner Prof. Thomas Theis Prof. Volker Blum 《Chemphyschem》2021,22(19):1947-1957
An in-depth theoretical analysis of key chemical equilibria in Signal Amplification by Reversible Exchange (SABRE) is provided, employing density functional theory calculations to characterize the likely reaction network. For all reactions in the network, the potential energy surface is probed to identify minimum energy pathways. Energy barriers and transition states are calculated, and harmonic transition state theory is applied to calculate exchange rates that approximate experimental values. The reaction network energy surface can be modulated by chemical potentials that account for the dependence on concentration, temperature, and partial pressure of molecular constituents (hydrogen, methanol, pyridine) supplied to the experiment under equilibrium conditions. We show that, under typical experimental conditions, the Gibbs free energies of the two key states involved in pyridine-hydrogen exchange at the common Ir-IMes catalyst system in methanol are essentially the same, i. e., nearly optimal for SABRE. We also show that a methanol-containing intermediate is plausible as a transient species in the process. 相似文献
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Dr. Long Zhang Changming Xu Prof. Dr. Xueling Mi Prof. Dr. Sanzhong Luo 《化学:亚洲杂志》2014,9(12):3565-3571
Chemoselective control over N/O selectivity is an intriguing issue in nitroso chemistry. Recently, we reported an unprecedented asymmetric α‐amination reaction of β‐ketocarbonyl compounds that proceeded through the catalytic coupling of enamine carbonyl groups with in‐situ‐generated carbonyl nitroso moieties. This process was facilitated by a simple chiral primary and tertiary diamine that was derived from tert‐leucine. This reaction featured high chemoselectivity and excellent enantioselectivity for a broad range of substrates. Herein, a computational study was performed to elucidate the origins of the enantioselectivity and N/O regioselectivity. We found that a bidentate hydrogen‐bonding interaction between the tertiary N+? H and nitrosocarbonyl groups accounted for the high N selectivity, whilst the enantioselectivity was determined by Si‐facial attack on the (E)‐ and (Z)‐enamines in a Curtin–Hammett‐type manner. The bidentate hydrogen‐bonding interaction with the nitrosocarbonyl moieties reinforced the facial selectivity in this process. 相似文献
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Martin Breugst Hans‐Ulrich Reissig 《Angewandte Chemie (International ed. in English)》2020,59(30):12293-12307
The concept of 1,3‐dipolar cycloadditions was presented by Rolf Huisgen 60 years ago. Previously unknown reactive intermediates, for example azomethine ylides, were introduced to organic chemistry and the (3+2) cycloadditions of 1,3‐dipoles to multiple‐bond systems (Huisgen reaction) developed into one of the most versatile synthetic methods in heterocyclic chemistry. In this Review, we present the history of this research area, highlight important older reports, and describe the evolution and further development of the concept. The most important mechanistic and synthetic results are discussed. Quantum‐mechanical calculations support the concerted mechanism always favored by R. Huisgen; however, in extreme cases intermediates may be involved. The impact of 1,3‐dipolar cycloadditions on the click chemistry concept of K. B. Sharpless will also be discussed. 相似文献
12.
Jesús Sanjosé-Orduna Ángel L. Mudarra Dr. Sara Martínez de Salinas Dr. Mónica H. Pérez-Temprano 《ChemSusChem》2019,12(13):2882-2897
The sustainable synthesis of relevant scaffolds for their use in the pharmaceutical, agrochemical, and materials sectors constitutes one of the most urgent challenges that the chemical community needs to overcome. In this context, the development of innovative and more efficient catalytic processes based on a fundamental understanding of the underlying reaction mechanisms remains a largely unresolved challenge for academic and industrial chemists. Herein, selected examples of computational and experimental knowledge-driven approaches for the rational design of transition-metal-catalyzed transformations are discussed. 相似文献
13.
《Angewandte Chemie (International ed. in English)》2017,56(34):10070-10086
The activation strain or distortion/interaction model is a tool to analyze activation barriers that determine reaction rates. For bimolecular reactions, the activation energies are the sum of the energies to distort the reactants into geometries they have in transition states plus the interaction energies between the two distorted molecules. The energy required to distort the molecules is called the activation strain or distortion energy. This energy is the principal contributor to the activation barrier. The transition state occurs when this activation strain is overcome by the stabilizing interaction energy. Following the changes in these energies along the reaction coordinate gives insights into the factors controlling reactivity. This model has been applied to reactions of all types in both organic and inorganic chemistry, including substitutions and eliminations, cycloadditions, and several types of organometallic reactions. 相似文献
14.
Dr. S. Maryamdokht Taimoory Dr. Vincenzo Alessandro Cataldo Dr. Andreas Schäfer Prof. John F. Trant Dr. Ryan Guterman 《Chemistry (Weinheim an der Bergstrasse, Germany)》2021,27(10):3440-3448
Alkylating reagents based on thioimidazolium ionic liquids were synthesized and the influence of the anion on the alkylation reaction mechanism explored in detail using both experimental and computational methods. Thioimidazolium cations transfer alkyl substituents to nucleophiles, however the reaction rate was highly dependent on anion identity, demonstrating that the anion is not innocent in the mechanism. Detailed analysis of the computationally-derived potential energy surfaces associated with possible mechanisms indicated that this dependence arises from a combination of anion induced electronic, steric and coordinating effects, with highly nucleophilic anions catalyzing a 2-step process while highly non-nucleophilic, delocalized anions favor a 1-step reaction. This work also confirms the presence of ion-pairs and aggregates in solution thus supporting anion-induced control over the reaction rate and mechanism. These findings provide new insight into an old reaction allowing for better design of cationic alkylators in synthesis, gene expression, polymer science, and protein chemistry applications. 相似文献
15.
Prof. Dr. Yong Zhang 《Chemistry (Weinheim an der Bergstrasse, Germany)》2019,25(58):13231-13247
Engineered heme proteins and biomimetic iron porphyrins have been found to possess excellent catalytic properties for numerous carbene transfer reactions. Computational studies, including the use of DFT calculations and molecular dynamics simulations, have been employed to help understand some important mechanistic aspects of heme carbene transfer reactions. This review summarizes advances in the computational results published in the following two areas: 1) the electronic and geometric structures of heme carbenes; spectroscopic properties; and effects of carbene substituent, porphyrin substituent, axial ligand, and spin state on heme carbene formation; and 2) mechanisms of heme carbenoid X−H (X=C, Si, B, N, S) insertions and cyclopropanation, including effects of heme carbene structural components and protein environment, as well as oxidation state and spin state. A brief outlook of future development is also addressed. 相似文献
16.
Kazuya Honda Dr. Travis V. Harris Dr. Miho Hatanaka Prof. Dr. Keiji Morokuma Prof. Dr. Koichi Mikami 《Chemistry (Weinheim an der Bergstrasse, Germany)》2016,22(26):8796-8800
The reaction mechanism for difluoromethylation of lithium enolates with fluoroform was analyzed computationally (DFT calculations with the artificial force induced reaction (AFIR) method and solvation model based on density (SMD) solvation model (THF)), showing an SN2‐type carbon–carbon bond formation; the “bimetallic” lithium enolate and lithium trifluoromethyl carbenoid exert the C?F bond “dual” activation, in contrast to the monometallic butterfly‐shaped carbenoid in the Simmons–Smith reaction. Lithium enolates, generated by the reaction of 2 equiv. of lithium hexamethyldisilazide (rather than 1 or 3 equiv.) with the cheap difluoromethylating species fluoroform, are the most useful alkali metal intermediates for the synthesis of pharmaceutically important α‐difluoromethylated carbonyl products. 相似文献
17.
Belding SR Limon-Petersen JG Dickinson EJ Compton RG 《Angewandte Chemie (International ed. in English)》2010,49(48):9242-9245
18.
Dr. Przemyslaw Dopieralski Dr. Jordi Ribas‐Arino Dr. Padmesh Anjukandi Dr. Martin Krupicka Prof. Dr. Dominik Marx 《Angewandte Chemie (International ed. in English)》2016,55(4):1304-1308
Understanding the impact of tensile forces on disulfide bond cleavage is not only crucial to the breaking of cross‐linkers in vulcanized materials such as strained rubber, but also to the regulation of protein activity by disulfide switches. By using ab initio simulations in the condensed phase, we investigated the response of disulfide cleavage by β‐elimination to mechanical stress. We reveal that the rate‐determining first step of the thermal reaction, which is the abstraction of the β‐proton, is insensitive to external forces. However, forces larger than about 1 nN were found to reshape the free‐energy landscape of the reaction so dramatically that a second channel is created, where the order of the reaction steps is reversed, turning β‐deprotonation into a barrier‐free follow‐up process to C?S cleavage. This transforms a slow and force‐independent process with second‐order kinetics into a unimolecular reaction that is greatly accelerated by mechanical forces. 相似文献
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Dr. Yelu Shi Matthew A. Michael Prof. Dr. Yong Zhang 《Chemistry (Weinheim an der Bergstrasse, Germany)》2021,27(15):5019-5027
The interconversion of NO and HNO, via copper zinc superoxide dismutase (CuZnSOD), is important in biomedicine and for HNO detection. Many mechanistic questions, including the decades-long debate on reversibility, were resolved in this work. Calculations of various active-site and full-protein models show that the basic mechanism is proton-coupled electron transfer with a computed barrier of 10.98 kcal mol−1, which is in excellent agreement with experimental results (10.62 kcal mol−1), and this nonheme protein-mediated reaction has many significant mechanistic differences compared with the conversions mediated by heme proteins due to geometric and electronic factors. The reasons for the irreversible nature of this conversion and models with the first thermodynamically favorable and kinetically feasible mechanism for the experimental reverse reaction were discovered. Such results are the first for nonheme enzyme mediated HNO to NO conversions, which shall facilitate other related studies and HNO probe development. 相似文献