Role of Brucella sp. and Gallionella sp. in oil degradation and corrosion

Microbiologically influenced corrosion is responsible for most of the internal corrosion in oil transmission pipelines and storage tanks. In the present study, the role of bacteria on oil degradation and its influence on corrosion have been studied. Two systems (biotic and abiotic) with and without inorganic content and bacteria were employed for studying degradation and corrosion. The aerobic heterotrophic bacterial population (HB) was found to be higher in the presence of inorganic medium than its absence. The oil degradation by microbes was characterized by Fourier transform infrared spectroscopy (FTIR) and nuclear magnetic resonance (NMR). The corrosion studies were carried out by gravimetric method. It was found that Gallionella sp. degraded aliphatic protons CH₂CH₂ to OCH₂ whereas Brucella sp. converted only aromatic ring to aliphatic protons. The following inferences have been made from this study: (a) inorganic contents in contaminated water determine the oil degradation in storage tanks and transporting pipelines; (b) the degraded product may adsorb on pipeline, which would enhance the rate of microbial corrosion.     

CATALOGIC 301C model – validation and improvement

In Europe, REACH legislation encourages the use of alternative in silico methods such as (Q)SAR models. According to the recent progress of Chemical Substances Control Law (CSCL) in Japan, (Q)SAR predictions are also utilized as supporting evidence for the assessment of bioaccumulation potential of chemicals along with read across. Currently, the effective use of read across and QSARs is examined for other hazards, including biodegradability. This paper describes the results of external validation and improvement of CATALOGIC 301C model based on more than 1000 tested new chemical substances of the publication schedule under CSCL. CATALOGIC 301C model meets all REACH requirements to be used for biodegradability assessment. The model formalism built on scientific understanding for the microbial degradation of chemicals has a well-defined and transparent applicability domain. The model predictions are adequate for the evaluation of the ready degradability of chemicals.     

Mechanical degradation of filter polymer materials: Polyphenylene sulfide

Polyphenylene sulfide (PPS) is known as a material resistant to high temperature and chemicals; however, there are arguments on the durability of PPS non-woven fabrics to chemicals, such as nitric acid (HNO₃), sulfuric acid (H₂SO₄), and hydrochloric acid (HCl). Therefore, this work aims at investigating the degradation of PPS non-woven fabrics in HNO₃, H₂SO₄ and HCl, and at confirming acid durability of PPS non-woven fabrics. In addition, this paper also studies the interaction among these three acids by measuring the retention of strength in binary or tertiary mixtures of these three acids. A discussion has been made on the acceleration/retardation of PPS degradation by the interactive effects, and also on the chemistry related to the degradation by these acids. Furthermore, there is a linear relationship between the nitric acid concentration and the proportion of carbon in the remaining PPS structures after 100 h of acid exposure. Also, this proportion of carbon is a good indicator of the retained strength in PPS fabrics.     

Quantitative prediction of biodegradability,metabolite distribution and toxicity of stable metabolites

An evaluation of the capability of organic chemicals to mineralize is an important factor to consider when assessing their fate in the environment. Microbial degradation can convert a toxic chemical into an innocuous one, and vice versa , or alter the toxicity of a chemical. Moreover, primary biodegradation can convert chemicals into stable products that can be difficult to mineralize. In this paper, we present some new results obtained on the basis of a recently developed probabilistic approach to modeling biodegradation based on microbial transformation pathways. The metabolic transformations and their hierarchy were calibrated by making use of the ready biodegradability data from the MITI-I test and expert knowledge for the most probable transformation pathways. A model was developed and integrated into an expert software system named CATABOL that is able to predict the probability of biodegradation of organic chemicals directly from their structure. CATABOL simulates the effects of microbial enzyme systems, generates the most plausible transformation pathways, and quantitatively predicts the persistence and toxicity of the biodegradation products. A subset of 300 organic chemicals were selected from Canada's Domestic Substances List and subjected to CATABOL to compare predicted properties of the parent chemicals with their respective first stable metabolite. The results show that most of the stable metabolites have a lower acute toxicity to fish and a lower bioaccumulation potential compared to the parent chemicals. In contrast, the metabolites appear to be generally more estrogenic than the parent chemicals.     

Biodegradation of Pyridine and Pyridine Derivatives by Soil and Subsurface Microorganisms

Abstract

Large amounts of aromatic compounds are produced by various industries and two thirds of these are heterocyclic chemicals. Compared with the extensive information available on microbial degradation of homocyclic aromatic compounds, relatively little is known on the transformation and biodegradation of heterocyclic chemicals in soil. Recent concerns about the persistence of hazardous pollutants have led to a renewed interest in the biodegradation of heterocyclic compounds. Hence, we investigated the microbial degradation of pyridine and some of its alkylated derivatives under aerobic and anaerobic conditions in groundwater, subsurface sediment, and soil. Results of the investigation revealed that these compounds were degraded predominantly under aerobic conditions and, to a lesser extent, under anaerobic conditions, with nitrate or sulfate serving as electron acceptors. In groundwater polluted with various pyridine derivatives, biodegradation was limited by the absence of oxygen. Therefore, we conclude that, under appropriate conditions, bioremediation is a potentially feasible method for the clean-up of environments contaminated with heterocyclic chemicals and, in particular, pyridine derivatives.     

New tools for analysing degradation

New tools for analysing degradability are presented. The degradation product patterns and morphology changes are proved to be means to differentiate on the one hand physical/chemical (abiotic) and on the other hand biological (biotic) ageing of polymers. In the biotic environment an assimilation of carboxylic acids occurs and a series of longer n-alkanes (C21–C26) is present. In the abiotic samples carboxylic acids are identified but no n-alkanes. This is in agreement with the biodegradation mechanism of LDPE proposed by us 1987. Morphology changes as manifested by crystallinity (w_c) and lamella thickness (l) revealed a slow decrease of w_c and (l) in biotically aged samples while the corresponding abiotically aged ones show constant or increasing values. Chromatography of low molecular weight compounds and x-ray diffraction analysis of crystallinity and lamellae thickness creates an opportunity for a deeper insight into the degradation mechanisms.     

Microbial growth yield estimates from thermodynamics and its importance for degradation of pesticides and formation of biogenic non-extractable residues

In biodegradation studies with isotope-labelled pesticides, fractions of non-extractable residues (NER) remain, but their nature and composition is rarely known, leading to uncertainty about their risk. Microbial growth leads to incorporation of carbon into the microbial mass, resulting in biogenic NER. Formation of microbial mass can be estimated from the microbial growth yield, but experimental data is rare. Instead, we suggest using prediction methods for the theoretical yield based on thermodynamics. Recently, we presented the Microbial Turnover to Biomass (MTB) method that needs a minimum of input data. We have estimated the growth yield of 40 organic chemicals (31 pesticides) using the MTB and two existing methods. The results were compared to experimental values, and the sensitivity of the methods was assessed. The MTB method performed best for pesticides. Having the theoretical yield and using the released CO₂ as a measure for microbial activity, we predicted a range for the formation of biogenic NER. For the majority of the pesticides, a considerable fraction of the NER was estimated to be biogenic. This novel approach provides a theoretical foundation applicable to the evaluation and prediction of biogenic NER formation during pesticide degradation experiments, and may also be employed for the interpretation of NER data from regulatory studies.     

Thermal degradation of phytate produces all four possible inositol pentakisphosphates as determined by ion chromatography and 1H and 31P NMR spectroscopy

Abstract

Decomposition of phytate has recently been shown to occur under mild conditions in the solid state, giving rise to a complex mixture of lower inositol phosphates. In this study, the reaction products of this thermal, abiotic degradation of phytate were separated using ion chromatography and the most highly phosphorylated products subsequently identified using 1D and 2D NMR spectroscopy. Two late eluting fractions were each shown to be a mixture of two specific inositol pentakisphosphate isomers. The peak with shorter retention time contained Ins(1,2,3,4,6)P₅ and DL-Ins(1,2,3,4,5)P₅, while the later eluting fraction contained Ins(1,3,4,5,6)P₅ and DL-Ins(1,2,4,5,6)P₅. The formation of all four possible inositol pentakisphosphate isomers by thermal degradation of phytate contrasts with the selective production of unique inositol pentakisphosphate isomers during enzymatic phytate degradation and therefore suggests a method for differentiating abiotic and biotic processes in environmental samples, including soils and decomposing plant biomass.     

Quantitative prediction of biodegradability,metabolite distribution and toxicity of stable metabolites

An evaluation of the capability of organic chemicals to mineralize is an important factor to consider when assessing their fate in the environment. Microbial degradation can convert a toxic chemical into an innocuous one, and vice versa, or alter the toxicity of a chemical. Moreover, primary biodegradation can convert chemicals into stable products that can be difficult to mineralize. In this paper, we present some new results obtained on the basis of a recently developed probabilistic approach to modeling biodegradation based on microbial transformation pathways. The metabolic transformations and their hierarchy were calibrated by making use of the ready biodegradability data from the MITI-I test and expert knowledge for the most probable transformation pathways. A model was developed and integrated into an expert software system named CATABOL that is able to predict the probability of biodegradation of organic chemicals directly from their structure. CATABOL simulates the effects of microbial enzyme systems, generates the most plausible transformation pathways, and quantitatively predicts the persistence and toxicity of the biodegradation products. A subset of 300 organic chemicals were selected from Canada's Domestic Substances List and subjected to CATABOL to compare predicted properties of the parent chemicals with their respective first stable metabolite. The results show that most of the stable metabolites have a lower acute toxicity to fish and a lower bioaccumulation potential compared to the parent chemicals. In contrast, the metabolites appear to be generally more estrogenic than the parent chemicals.     

Metabolic activation of chemicals: in-silico simulation†

The role of metabolism in prioritising chemicals according to their potential adverse health effects is extremely important given the fact that innocuous parents can be transformed into toxic metabolites. Our recent efforts in simulating metabolic activation of chemicals are reviewed in this work. The application of metabolic simulators to predict biodegradation (microbial degradation pathways), bioaccumulation (fish liver metabolism), skin sensitisation (skin metabolism), mutagenicity (rat liver S-9 metabolism) are discussed. The ability of OASIS approach to predict metabolism (toxicokinetics) and toxicity (toxicodynamics) of chemicals resulting from their metabolic activation in a single modelling platform is an important advantage of the method. It allows prioritisation of chemicals due to predicted toxicity of their metabolites.

     

Prediction of biodegradability from structure: Imidazoles

A project for the development of Structure-Activity Relationship for Biodegradation is presented. The aim of the project is to assemble sets of structural rules governing the potential microbial degradability of (classes of) chemicals. These rules will provide tools to take into account the biodegradation aspects of a product--and all precursors in the production process--early in the product development. The modeling concept is to take all experimental biodegradation data available and combine structural trends in the data with mechanistical information from degradation pathways. The rules that are derived should give insight into the possibility of biodegradation for specific classes of chemicals, thereby revealing why a compound is biodegradable or not. For the class of imidazole derivatives such rules are derived, and a model degradation mechanism is proposed in analogy to the urocanate-hydratase mechanism from histidine metabolism. The model is validated using 12 imidazole-compounds, which are all predicted correctly to be poorly biodegradable. It is demonstrated that both data analysis and information on enzymatic reaction mechanisms are necessary to yield valid Structure-Biodegradation Relationship.     

半导体-微生物界面电子传递及其在环境领域的应用

半导体-微生物复合体系在污染物深度降解、 合成有价化学品及元素生物地球化学循环等领域发挥着重要作用, 其界面反应过程的核心是电子转移. 本文重点阐述了微生物/半导体界面上微生物的种类和功能、 半导体的种类及光催化机制, 总结了半导体-微生物界面的直接和间接电子传递途径, 讨论了强化界面电子传递的方法以及半导体与微生物系统的稳定性, 介绍了近年来半导体-微生物复合体系在污染物转化、 化学品合成以及资源循环利用方面的应用现状, 以期为半导体-微生物复合体系的设计及其环境领域应用提供指导.     

Metabolic activation of chemicals: in-silico simulation

The role of metabolism in prioritising chemicals according to their potential adverse health effects is extremely important given the fact that innocuous parents can be transformed into toxic metabolites. Our recent efforts in simulating metabolic activation of chemicals are reviewed in this work. The application of metabolic simulators to predict biodegradation (microbial degradation pathways), bioaccumulation (fish liver metabolism), skin sensitisation (skin metabolism), mutagenicity (rat liver S-9 metabolism) are discussed. The ability of OASIS approach to predict metabolism (toxicokinetics) and toxicity (toxicodynamics) of chemicals resulting from their metabolic activation in a single modelling platform is an important advantage of the method. It allows prioritisation of chemicals due to predicted toxicity of their metabolites.     

Feasibility of a Two-Step Culture Method to Improve the CO2-Fixing Efficiency of Nonphotosynthetic Microbial Community and Simultaneously Decrease the Spontaneous Oxidative Precipitates from Mixed Electron Donors

When compared with H₂, mixed electron donors (MED), comprising S^2?, S₂O₃ ^2?, and NO₂ ^?, could generally improve the CO₂-fixing efficiency of nonphotosynthetic microbial communities (NPMCs). However, a large amount of abiotic precipitates combined with bacteria produced during culture may be unfavorable for the recycling and reuse of bacteria. The main component of the abiotic precipitates is S⁰, which influences the enrichment and reuse of bacteria but is not conducive for CO₂ fixation in the subsequent step. In this study, a two-step culture method (TSCM), employing H₂ and MED, respectively, was verified to be feasible for improving the CO₂-fixing efficiency of NPMCs in the second step. In the TSCM, the net-fixed CO₂ increased to 854 mg/L and abiotic precipitates were not produced in the medium. Sequence analysis of 16 s rDNA from NPMC indicated the presence of microbial symbioses in the NPMC, supporting the possible applications of TSCM.     

Oxidation and biodegradation of polyethylene films containing pro-oxidant additives: Synergistic effects of sunlight exposure, thermal aging and fungal biodegradation

Synergistic effects of sunlight exposure, thermal aging and fungal biodegradation on the oxidation and biodegradation of linear low density poly(ethylene) PE-LLD films containing pro-oxidant were examined. To achieve oxidation and degradation, films were first exposed to the sunlight for 93 days during the summer months followed by their incubation with fungal strains previously isolated from the soil based on the ability to grow on the oxidized PE-LLD as a sole carbon source. Some films were also thermally aged at temperatures ranging between 45°C and 65 °C, either before or after fungal degradation. Films with pro-oxidant additives exhibited a higher level of oxidation as revealed by increase in their carbonyl index (COi). In addition to increase in the COi, films showed a slight increase in crystallinity and melting temperature (T_m), considerably lower onset degradation temperatures, and a concomitant increase in the % weight of the residues. The level of oxidation observed in thermally aged films was directly proportional to the aging temperature. The PE-LLD films with pro-oxidant exposed to sunlight followed by thermal aging showed even higher rate and extent of oxidation when subsequently subjected to fungal biodegradation. The higher oxidation rate also correlated well with the CO₂ production in the fungal biodegradation tests. Similar films oxidized and aged but not exposed to fungal biodegradation showed much less degradation. Microscopic examination showed a profuse growth and colonization of fungal mycelia on the oxidized films by one strain, while another spore-producing strain grew around the film edges. Data presented here suggest that abiotic oxidation of polymer's carbon backbone produced metabolites which supported metabolic activities in fungal cells leading to further biotically-mediated polymer degradation. Thus, a combined impact of abiotic and biotic factors promoted the oxidation/biodegradation of PE-LLD films containing pro-oxidants.     

Abiotic and biotic degradation of aliphatic polyesters from “petro” versus “green” resources

Aliphatic polyesters are degradable by abiotic and/or biotic hydrolysis. The accessibility of a polymer to degradative attack by living organisms is not dependent on its origin, but on its molecular composition and architecture. Synthetic polymers with intermittent ester linkage (e.g. polyesters, polyurethanes etc.) are accessible to biodegradative attack of esterase. On the other hand aliphatic polyesters are also quickly degraded by a pure abiotic hydrolysis. The results from abiotic and biotic hydrolyses of polycaprolactone (PCL) (from “petro” resource), poly(L-lactide) (PLLA) and polyhydroxyalkanoates (PHA) (from “green” resources) are presented and discussed with the respect to rate of degradation, molecular weight changes and degradation product pattern. For the environmental consequences, the type of formed degradation products are of importance and not the origin of the polymer.     

Biomass valorisation by staged degasification: A new pyrolysis-based thermochemical conversion option to produce value-added chemicals from lignocellulosic biomass

Pyrolysis of lignocellulosic biomass leads to an array of useful solid, liquid and gaseous products. Staged degasification is a pyrolysis-based conversion route to generate value-added chemicals from biomass. Because of different thermal stabilities of the main biomass constituents hemicellulose, cellulose and lignin, different temperatures may be applied for a step-wise degradation into valuable chemicals. Staged degasification experiments were conducted with deciduous (beech, poplar), coniferous (spruce) and herbaceous (straw) biomass. Thermogravimetry was used to estimate appropriate temperatures for a two-stage degradation process that was subsequently evaluated on bench-scale by moving bed and bubbling fluidised bed pyrolysis experiments. Degasification in two consecutive stages at 250–300 °C and 350–400 °C leads to mixtures of degradation products that originate from the whole biomass. The mixtures that were generated at 250–300 °C, predominantly contain hemicellulose degradation products, while the composition of the mixtures that were obtained at 350–400 °C, is more representative for cellulose. Lignin-derived fragments are found in both mixtures. Yields up to 5 wt% of the dry feedstock are obtained for chemicals like acetic acid, furfural, acetol and levoglucosan. Certain groups of thermal degradation products like C₂–C₄ oxygenates and phenols are formed in yields up to 3 wt%. Highest yields have been obtained for beech wood. Staged degasification is a promising pyrolysis-based route to valorise lignocellulosic biomass. Clear opportunities exist to increase product yields and selectivities by optimisation of reactor conditions, application of catalysts and specific biomass pretreatments like demineralisation and pre-hydrolysis.     

Plant Secondary Metabolites Produced in Response to Abiotic Stresses Has Potential Application in Pharmaceutical Product Development

Plant secondary metabolites (PSMs) are vital for human health and constitute the skeletal framework of many pharmaceutical drugs. Indeed, more than 25% of the existing drugs belong to PSMs. One of the continuing challenges for drug discovery and pharmaceutical industries is gaining access to natural products, including medicinal plants. This bottleneck is heightened for endangered species prohibited for large sample collection, even if they show biological hits. While cultivating the pharmaceutically interesting plant species may be a solution, it is not always possible to grow the organism outside its natural habitat. Plants affected by abiotic stress present a potential alternative source for drug discovery. In order to overcome abiotic environmental stressors, plants may mount a defense response by producing a diversity of PSMs to avoid cells and tissue damage. Plants either synthesize new chemicals or increase the concentration (in most instances) of existing chemicals, including the prominent bioactive lead compounds morphine, camptothecin, catharanthine, epicatechin-3-gallate (EGCG), quercetin, resveratrol, and kaempferol. Most PSMs produced under various abiotic stress conditions are plant defense chemicals and are functionally anti-inflammatory and antioxidative. The major PSM groups are terpenoids, followed by alkaloids and phenolic compounds. We have searched the literature on plants affected by abiotic stress (primarily studied in the simulated growth conditions) and their PSMs (including pharmacological activities) from PubMed, Scopus, MEDLINE Ovid, Google Scholar, Databases, and journal websites. We used search keywords: “stress-affected plants,” “plant secondary metabolites, “abiotic stress,” “climatic influence,” “pharmacological activities,” “bioactive compounds,” “drug discovery,” and “medicinal plants” and retrieved published literature between 1973 to 2021. This review provides an overview of variation in bioactive phytochemical production in plants under various abiotic stress and their potential in the biodiscovery of therapeutic drugs. We excluded studies on the effects of biotic stress on PSMs.