Two terphenyl‐based diol hosts and corresponding solvent inclusions with dimethylformamide and acetonitrile

Having reference to an elongated structural modification of 2,2′‐bis(hydroxydiphenylmethyl)biphenyl, (I), the two 1,1′:4′,1′′‐terphenyl‐based diol hosts 2,2′′‐bis(hydroxydiphenylmethyl)‐1,1′:4′,1′′‐terphenyl, C₄₄H₃₄O₂, (II), and 2,2′′‐bis[hydroxybis(4‐methylphenyl)methyl]‐1,1′:4′,1′′‐terphenyl, C₄₈H₄₂O₂, (III), have been synthesized and studied with regard to their crystal structures involving different inclusions, i.e. (II) with dimethylformamide (DMF), C₄₄H₃₄O₂·C₂H₆NO, denoted (IIa), (III) with DMF, C₄₈H₄₂O₂·C₂H₆NO, denoted (IIIa), and (III) with acetonitrile, C₄₈H₄₂O₂·CH₃CN, denoted (IIIb). In the solvent‐free crystals of (II) and (III), the hydroxy H atoms are involved in intramolecular O—H...π hydrogen bonding, with the central arene ring of the terphenyl unit acting as an acceptor. The corresponding crystal structures are stabilized by intermolecular C—H...π contacts. Due to the distinctive acceptor character of the included DMF solvent species in the crystal structures of (IIa) and (IIIa), the guest molecule is coordinated to the host via O—H...O=C hydrogen bonding. In both crystal structures, infinite strands composed of alternating host and guest molecules represent the basic supramolecular aggregates. Within a given strand, the O atom of the solvent molecule acts as a bifurcated acceptor. Similar to the solvent‐free cases, the hydroxy H atoms in inclusion structure (IIIb) are involved in intramolecular hydrogen bonding, and there is thus a lack of host–guest interaction. As a result, the solvent molecules are accommodated as C—H...N hydrogen‐bonded inversion‐symmetric dimers in the channel‐like voids of the host lattice.     

Facile,high-yielding synthesis of deepened cavitands: a synthetic and theoretical study

A wide variety of 2-methyl-resorcinol-based deepened cavitands were synthesised from readily available reagents in a four-step procedure with overall yields of up to 62%. A systematic variation of the rim was carried out by building up a flexible upper aromatic wall on the rigid cavitand platform through CH₂, CH₂O and CH₂OCH₂ spacers. These aromatic walls were further extended by a Suzuki cross-coupling reaction. Full characterisation of the synthesised cavitands was carried out. The solid-state structure of tetrakis(phenoxymethyl)cavitand was determined by X-ray crystallography. Gas-phase theoretical calculations for this molecule predict the presence of weak T-shaped interactions between the upper phenyl rings. The host–guest complex formation ability of two deepened cavitand hosts towards 4-chloro-benzotrifluoride was proved by photoluminescence method.     

Flexible host frameworks with diverse cavities in inclusion crystals of bile acids and their derivatives

We have systematically investigated structures and properties of inclusion crystals of bile acids and their derivatives. These steroidal compounds form diverse host frameworks having zero‐, one‐ and two‐dimensional cavities, causing various inclusion behaviors towards many organic compounds. The diverse host frameworks exhibit the following guest‐dependent flexibility. First, the frameworks mainly depend on the included guests in size and shape. The size‐dependence is quantitatively estimated by the parameter PCcavity, which is the volume ratio of a guest molecule to a host cavity. The resulting values of PCcavity lie in the range of 42–76%. Second, each of the host frameworks has its own range of the values. Some guests can employ two different frameworks with the boundary values, explaining formation of polymorphic crystals. Third, the host frameworks are selected by host–guest interactions through weak hydrogen bonds, such as NH/π and CH/O. The weak hydrogen bonds play an important role for various selective inclusion processes. Fourth, the host frameworks are dynamically exchangeable, resulting in intercalation and polymerization in the cavities. These static and dynamic structures of the frameworks demonstrate great potential of crystalline organic inclusion compounds as functional materials. © 2009 The Japan Chemical Journal Forum and Wiley Periodicals, Inc. Chem Rec 9: 124–135; 2009: Published online in Wiley InterScience ( www.interscience.wiley.com ) DOI 10.1002/tcr.20171     

Enhanced and Heteromolecular Guest Encapsulation in Nonporous Crystals of a Perfluorinated Triketonato Dinuclear Copper Complex

The flexible host framework of a perfluorinated mononuclear copper complex, [Cu(L¹)₂] ( 1 , HL¹=3-hydroxy-1,3-bis(pentafluorophenyl)-2-propen-1-one), with a CuO₄ core reversibly encapsulated several organic guest molecules through electrostatic interactions in its crystals. Hence, the corresponding dinuclear complex, [Cu₂(L²)₂] ( 2 , H₂L²=1,5-dihydroxy-1,5-bis(pentafluorophenyl)-1,4-pentadien-3-one), was prepared to enhance guest recognition and the ability to separate molecular mixtures. Complex 2 comprises a Cu₂O₆ core and four pentafluorophenyl groups. In crystal 2 , cavities are formed on the axial sites of the metal core that are surrounded by pentafluorophenyl groups. The crystal of 2 encapsulates various guest molecules, that is, benzene ( 3 ), toluene ( 4 ), xylene ( 5 ), mesitylene ( 6 ), durene ( 7 ), and anisole ( 8 ). X-ray crystallographic and thermogravimetric (TG) studies show that three guest molecules are present in the crystal cavities. The number of guest molecules found in complex 2 was higher than that in complex 1 , for example, ( 2 )₃ ⋅ ( 6 )₁₀> 1⋅ ( 6 )₂, ( 2 )₂ ⋅ ( 7 )₇> 1⋅7 , or 2⋅ ( 8 )₃> 1⋅ ( 8 )₂. Naphthalene ( 9 ), was encapsulated in 2 to give 2⋅ ( 9 )₃, but not in 1 . In the crystal of complex 2 , heteromolecular guest encapsulation was confirmed, designated as 2⋅ ( 3 )₂ ⋅9 . TG analysis indicates that the thermal stability of the guest-included crystals of 2 is higher than that of 1 .     

Crystal structures of a calix[4]arene controlled by two affixed pyrene units

The synthesis and crystal structures of a calix[4]arene (1) with two affixed pyrene units and its corresponding inclusion compound with chloroform (1a) are reported. In both cases, stacking structures resulting from the influencing control of the pyrene units are observed. The occurrence of infinite or dimeric stack motifs of the pyrene units is dependent on the absence or presence of the included guest solvent.

     

Clathrates of organic onium halides,V: preparation of new clathrates and structure of the 1-propanol inclusion of a bis-quinuclidinium salt

Organic onium salts (3–15) are prepared and their inclusion capacity towards solvent molecules is investigated. The crystal structure of the1·propanol·H₂O clathrate ofN,N-[5-tert-butyl-1,3-phenylenebis(methylene)]bis(quinuclidinium)dibromide (4) is reported and compared with the X-ray structures of related clathrates described earlier. Supplementary Data: Details of the crystal structure are available on request from the Fachinformationszentrum Energie-Physik-Mathematik, D-7517 Eggenstein, Leopoldshafen 2, by quoting the depository number CSD 50883, the names of the authors, and the journal citation.     

Crystalline inclusion compounds of tetrabenzo-18-crown-6 with uncharged organic molecules. Solid-state structure of the nitroethane complex

Tetrabenzo-18-crown-6 (1) shows distinct solid-state inclusion properties towards a number of OH-acidic, CH-acidic and low-polar uncharged organic molecules. The single crystal X-ray analysis of the inclusion complex between1 and EtNO₂ (11) is reported. Crystals are monoclinic,P2₁/c, witha=12.887(1),b=19.365(2),c=10.776(1) Å, =96.33(2)^o,D _c=1.321g cm^–1,Z=4. The host macroring has a conformation similar to a dentist's-chair. The complex is stabilized mainly by C–H...O type interactions involving the methyl group of the EtNO₂ guest molecule which is highly disordered. The nitroethane guests are trapped in channels formed by the host macrocycles. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82150 (11 pages)     

Binding of a neutral guest to cucurbiturils: photophysics,thermodynamics and molecular modelling

Steady-state and time-resolved fluorescence techniques were used to study the thermodynamics of binding of a neutral polarity-sensitive guest, the methyl 2-naphthalenecarboxylate (2MN), with three cucurbiturils (CBn; n = 6, 7 and 8) in water. Association constants (K) were obtained from nonlinear regression analysis of the fluorescence intensity against [CB] in the 5–45°C range. 2MN complexed with CB7 exhibited a 1:1 stoichiometry (K ≈ 10³ M^? 1 at 25°C); however, it hardly did with CB6 (K < 10 M^? 1) and it did not with the larger CB8 macrocyclic ring. The (1:1) 2MN:CB7 complexation process was accompanied by a small unfavourable enthalpy change and was, therefore, entropically governed. Molecular mechanics and molecular dynamics calculations in the presence of water were also used to study the geometry of the complexes formed and the driving forces responsible for their formation. The results were compared with those previously obtained for the complexation of the same guest, 2MN, with natural α-, β- and γ-cyclodextrins.     

Complexation with diol host compounds. Part 1. Structures of the 1:2 molecular complexes oftrans-9, 10-dihydroxy-9,10-diphenyl-9,10-dihydroanthracene with acetophenone and with 3-methylcyclopentanone

The structures of the 1:2 molecular complexes of trans -9,10-dihydroxy-9,10-diphenyl-9,10-dihydroanthracene with acetophenone (1), (C₂₆H₂₀O₂·2 C₈H₈O) and with 3-methylcyclopentanone (2), (C₂₆H₂₀O₂·2C₆H₁₀O) have been determined by X-ray crystallography. The crystal data are as follows: Compound (1):P ,a =8.979(5) Å,b =9.316(3) Å,c = 11.12(1) Å, =94.40(6)°, = 106.53(6)°, = 109.92(5)°,V = 822.94 ų,Z = 1,R = 0.097 for 2549 unique reflections. Compound (2):P ,a = 8.958(7) Å,b =9.815(4) Å,c = 9.807(4) Å, = 96.88(3)°, = 109.21(8)°, = 103.33(7)°,V = 774.10 ų,Z = 1,R = 0.059 for 2494 unique reflections. The intermolecular arrangements in both structures are characterised by host-to-guest hydrogen bonding interactions. The thermal properties of compound (2) have been characterised by DTA and TGA thermograms.     

Crystalline host-guest complexes involving carboxylic acid hosts and a dimethyl sulphoxide guest. X-ray crystal structures of two inclusion species

The host compounds 2,2-binaphthyl-3,3-dicarboxylic acid (1) and 1,13–1-terphenyl-2,4,4-tricarboxylic acid (2) have been synthesized, and crystal structures of their inclusion compounds with DMSO {1a [1·DMSO(11)];2a [2·DMSO (12)]} have been determined from single crystal X-ray diffraction data. The crystals show monoclinic symmetry withZ=4 (P2₁/n for1a andP2₁/c for2a), with the unit cell dimensionsa=11.567(1),b=10.206(1),c=17.579(1) Å,=100.50(1)° for1a, anda=14.910(1),b=6.732(1),c=26.084(1) Å,=100.41(1)° for2a. The structural models were refined toR=0.032 with 3127 reflections for1a, andR=0.035 with 3175 observations for2a, collected atT=173(1) K. Both structures comprise a characteristic molecular recognition pattern for DMSO via strong (CO)O–HO(=S) hydrogen bonds and possible C–HO contacts, the latter ones from the guest methyl groups to the carbonyl oxygen of the host carboxyl groups. In the crystals H-bonded endless chains of alternating host and guest molecules are formed, which are held together by ordinary van der Waals' forces. Additionally, host2 binds a second DMSO molecule by a single (CO)O–HO(=S) bond.Supplementary Data relating to this article have been deposited with the British Library at Boston Spa, Wetherby, West Yorkshire, U.K., as Supplementary Publication No. SUP 82186 (9 pages)     

Inclusion by a substituted binaphthyl host: structures and kinetics of desolvation

The host compound 2,2′-bis(hydroxydiphenylmethyl)-1,1′-binaphthyl displays a remarkably constant conformation, which is governed chiefly by an intramolecular O–H…O hydrogen bond. Its inclusion compound with chloroform has been characterised and the dehydration product affords the corresponding oxepine with significantly different conformation.     

Formation of isolated guest dimers vs. host-guest coordination. X-Ray crystal structures of four carboxylic acid inclusion compounds formed by roof-shaped and scissor-like host molecules

The crystal structures of the inclusion compounds oftrans-9,10-dihydro-9,10-ethano-anthracene-11,12-dicarboxylic acid host (1) with formic acid (1a), acetic acid (1b), and propionic acid (1c) as guests, and of the coordinatoclathrate of the 1,1-binaphthyl-2,2-dicarboxylic acid host (2) with acetic acid as guest (2b) have been studied by single crystal X-ray diffraction. These studies show that inclusion of small carboxylic acids by carboxylic acid hosts like1 and2 results in formation of isolated, hydrogen-bonded guest dimers. Additional H-bond contacts between host and guest carboxylic groups are only formed in cases1a and2b. The dimeric acidic guest units are sitting in the cavities of the host or host-guest framework and have no other interactions than those of a weak Van der Waals' type with the neighbouring molecules. Crystal data:1·formic acid (1:2): triclinic (P),a = 11.6769(6),b = 9.4067(4),c = 9.0020(4) Å,a = 81.522(4), = 100.310(6), = 104.208(6)°,Z = 2,R = 0.048 for 2392 reflections;1·acetic acid (1:1): monoclinic (P2₁/n),a = 9.717(2),b = 14.462(2),c = 13.038(3)Å, = 104.27(1)°,Z=4,R=0.046 for 3042 observations;1·propionic acid (1:1): monoclinic (P2₁/n),a = 9.897(4),b = 14.671(7),c = 13.284(7) Å, = 105.92(6)°,Z = 4,R = 0.056 for 2302 reflections;2·acetic acid (2:3): triclinic (P),a = 12.746(1),b = 17.781(2),c = 11.010(1) Å, = 105.606(4), = 112.992(8), = 81.175(6)°,Z = 2,R = 0.067 for 4375 observations.     

Heterocalixarene Inclusion Chemistry. Structure of a Crystalline Host-Guest Complex Including endo-Calix Ethyl Acetate and exo-Calix Clustering of Water

The X-ray crystal structure of the solvent inclusion compound formed between heterocalix[8]arene 1, ethyl acetate and water (1 : 1 : 4.5) has been studied. The compound crystallized in tetragonal space group I4₁/a, a = b = 21.278(3), c = 31.290(4) Å, V = 14167(4) ų, Z = 8. The host molecule, incorporating benzimidazol-2-one and 2,5-dimethoxy-1,3-phenylene subunits in an alternate cyclic arrangement, forms an almost perfectly closed cavity which encapsulates one solvent ethyl acetate guest molecule. Water molecules being entrapped in the lattice cages in the form of cyclic and linear clusters bind the bulky inclusion complexes via H-bonds in infinite layers. Two symmetry center related benzimidazole-2-one moieties of two hosts from neighbouring layers in the crystal lattice are arranged such that they partially overlap exhibiting stacking interaction.     

A concise and versatile route to tetrahydro‐1‐benzazepines carrying [a]‐fused heterocyclic units: synthetic sequence and spectroscopic characterization,and the molecular and supramolecular structures of one intermediate and two products

A concise, efficient and versatile route from simple starting materials to tricyclic tetrahydro‐1‐benzazepines carrying [a]‐fused heterocyclic units is reported. Thus, the easily accessible methyl 2‐[(2‐allyl‐4‐chlorophenyl)amino]acetate, (I), was converted, via (2RS,4SR)‐7‐chloro‐2,3,4,5‐tetrahydro‐1,4‐epoxy‐1‐benzo[b]azepine‐2‐carboxylate, (II), to the key intermediate methyl (2RS,4SR)‐7‐chloro‐4‐hydroxy‐2,3,4,5‐tetrahydro‐1H‐benzo[b]azepine‐2‐carboxylate, (III). Chloroacetylation of (III) provided the two regioisomers methyl (2RS,4SR)‐7‐chloro‐1‐(2‐chloroacetyl)‐4‐hydroxy‐2,3,4,5‐tetrahydro‐1H‐benzo[b]azepine‐2‐carboxylate, (IVa), and methyl (2RS,4SR)‐7‐chloro‐4‐(2‐chloroacetoxy)‐2,3,4,5‐tetrahydro‐1H‐benzo[b]azepine‐2‐carboxylate, C₁₄H₁₅Cl₂NO₄, (IVb), as the major and minor products, respectively, and further reaction of (IVa) with aminoethanol gave the tricyclic target compound (4aRS,6SR)‐9‐chloro‐6‐hydroxy‐3‐(2‐hydroxyethyl)‐2,3,4a,5,6,7‐hexahydrobenzo[f]pyrazino[1,2‐a]azepine‐1,4‐dione, C₁₅H₁₇ClN₂O₄, (V). Reaction of ester (III) with hydrazine hydrate gave the corresponding carbohydrazide (VI), which, with trimethoxymethane, gave a second tricyclic target product, (4aRS,6SR)‐9‐chloro‐6‐hydroxy‐4a,5,6,7‐tetrahydrobenzo[f][1,2,4]triazino[4,5‐a]azepin‐4(3H)‐one, C₁₂H₁₂ClN₃O₂, (VII). Full spectroscopic characterization (IR, ¹H and ¹³C NMR, and mass spectrometry) is reported for each of compounds (I)–(III), (IVa), (IVb) and (V)–(VII), along with the molecular and supramolecular structures of (IVb), (V) and (VII). In each of (IVb), (V) and (VII), the azepine ring adopts a chair conformation and the six‐membered heterocyclic rings in (V) and (VII) adopt approximate boat forms. The molecules in (IVb), (V) and (VII) are linked, in each case, into complex hydrogen‐bonded sheets, but these sheets all contain a different range of hydrogen‐bond types: N—H…O, C—H…O, C—H…N and C—H…π(arene) in (IVb), multiple C—H…O hydrogen bonds in (V), and N—H…N, O—H…O, C—H…N, C—H…O and C—H…π(arene) in (VII).     

Structures of three substituted pentacyclo[5.4.0.02, 6.03, 10.05, 9]undecanes and a computational analysis of bond lengths

5-Methyl-2-phenylpentacyclo[5.4.0.0^{2, 6}.0^{3, 10}.0^{5, 9}]undecane-8, 11-dione,5-methyl-2-phenylpentacyclo [5.4.0.0^2,6.0^3,10.0^5,9]undecane-8-one-11-ol,and 5-methyl-2-phenylpentacyclo[5.4.0.0^2,6.0^3,10.0^5,9]undecane-8,11-diol are three cage compounds which differ only in the oxidation state at C(8) and C(11). The three compounds contain a four-membered, a six-membered, and four five-membered rings fused into a cagelike structure. An X-ray structure analysis shows the C(1)-C(7) and C(9)-C(10) bonds in the diketo cage to be 1.606(2) and 1.586(2) Å, which are significantly longer than in the other two molecules. In order to assess the effects of strain, steric, and electronic factors in these compounds, we investigated the unsubstituted parent cage compounds and a series of derivatives by molecular mechanics (MM3), AMPAC (AM1), MOPAC (PM3), and GAUSSIAN 90 calculations. These data suggest that dipolar through space interactions are responsible for the bond elongation and not a _– ^* interaction, which has been postulated in parallel-systems originating from a common bond. A small degree of _– ^* through-bond interaction may contribute to the lengthening in the dimethylene cage analogues.     

Synthesis and crystal structures of sumpramolecular compounds of cucurbit[n]urils (n = 6, 8) with polynuclear strontium aqua complexes

Crystals of the {[Sr₄(H₂O)₁₂(NO₃)₄](C₃₆H₃₆N₂₄O₁₂)}(NO₃)₄·3H₂O and {[Sr₂(H₂O)₁₂][Sr(H₂O)₃(NO₃)₂]₂(C₄₈H₄₈N₃₂O₁₆)}(NO₃)₄·8H₂O were prepared by slow concentration of aqueous solutions containing strontium nitrate and macrocyclic cavitands, viz., cucurbit[6]uril and cucurbit[8]uril ([C₆H₆N₄O₂] _n , n = 6 and 8), respectively. According to the results of X-ray diffraction analysis, the crystal structures of these supramolecular compounds are built from polymeric chains, which consist of the alternating cucurbit[n]uril molecules and Sr²⁺ cations linked through the bridging aqua ligands and nitrate anions. The supramolecular compound of cucurbit[8]uril provides the first example of compounds in which this macrocycle is bound to metal aqua complexes.     

Three structures of dispirooxindole derivatives generated in situ through a three‐component one‐pot strategy with complete regio‐ and stereoselectivity

The challenging molecular architecture of spirooxindoles is appealing to chemists because it evokes novel synthetic strategies that address configurational demands and provides platforms for further reaction development. The [3+2] cycloaddition of the carbonyl ylide with arylideneoxindole via a five‐membered cyclic transition state gave a novel class of dispirooxindole derivatives, namely tert‐butyl 4′‐(4‐bromophenyl)‐1′′‐methyl‐2,2′′‐dioxo‐5′‐phenyl‐4′,5′‐dihydrodispiro[indoline‐3,2′‐furan‐3′,3′′‐indoline]‐1‐carboxylate, C₃₆H₃₁BrN₂O, (Ia), 5′‐(4‐bromophenyl)‐1,1′′‐dimethyl‐4′‐phenyl‐4′,5′‐dihydrodispiro[indoline‐3,2′‐furan‐3′,3′′‐indoline]‐2,2′′‐dione, C₃₂H₂₅BrN₂O₃, (Ib), and tert‐butyl 1′′‐methyl‐2,2′′‐dioxo‐4′‐phenyl‐5′‐(p‐tolyl)‐4′,5′‐dihydrodispiro[indoline‐3,2′‐furan‐3′,3′′‐indoline]‐1‐carboxylate, C₃₇H₃₄N₂O₅, (Ic). Crystal structure analyses of these dispirooxindoles revealed the formation of two diastereoisomers selectively and confirmed their relative stereochemistry (SSSR and RRRS). In all three structures, intramolecular C—H...O and π–π interactions between oxindole and dihydrofuran rings are the key factors governing the regio‐ and stereoselectivity, and in the absence of conventional hydrogen bonds, their crystal packings are strengthened by intermolecular C—H...π interactions.     

Polyhedral monocarbaborane chemistry : Reactions of the [6-Ph-nido-6-CB9H11] anion with two-electron donors to yield a series of neutral arachno and closo ten-vertex monocarbaborane derivatives

Reaction of the ten-vertex [6-Ph-nido-6-CB₉H₁₁]⁻ anion (1) with two-electron donor ligands L, where L is SMe₂, NH₂Ph, NC₅H₅, NC₅H₄-para-CH₂Ph, NC₅H₄-para-Ph or NC₉H₇ (where NC₉H₇ is quinoline) in the presence of {FeCl₃(OH₂)₆} gives the six neutral arachno ten-vertex monocarbaboranes [6-Ph-9-L-arachno-6-CB₉H₁₂], compounds 2, 3, 4, 7, 9 and 11, respectively, isolatable in yields of up to 63%. On prolonged treatment with {FeCl₃(OH₂)₆} oxidative cluster closure of the four compounds 4, 7, 9 and 11 that have pyridine-type ligands gives the neutral closo ten-vertex monocarbaboranes [1-Ph-6-L-closo-1-CB₉H₈], compounds 6, 8, 10 and 12, respectively, in yields of 49-92%. All new species 2, 3, 4, 6, 7, 8, 9, 10, 11 and 12 are characterised by single-crystal X-ray diffraction analysis and NMR spectroscopy. [This paper is an annotated exposition of parts of an oral presentation at the Third Pan-European Meeting of Boron Chemists, EUROBORON-3, Pruhonice, The Czech Republic, September 2004, of which the proceedings constitute this volume of Journal of Organometallic Chemistry.]