Theoretical study of the polarized infrared spectra of the hydrogen bond in 2‐furoic acid crystal dimer

This work presents a theoretical simulation of ν_{O? H} and ν_{O? D} band shapes in the polarized infrared spectra of 2‐furoic acid dimer crystals measured at liquid‐nitrogen temperature. The line shapes are studied theoretically within the framework of the anharmonic couplings between low‐frequency hydrogen‐bond vibrations and degenerate excited states of high‐frequency hydrogen vibrations in hydrogen‐bonded dimers and the anharmonic coupling between the first excited state of the fast mode and the harmonics or band combinations of some low‐frequency bending modes, which lead to Fermi resonances.This approach takes into account the adiabatic approximation, the intrinsic anharmonicity of the low‐frequency mode through a Morse potential, Davydov coupling triggered by resonance exchange between the excited states of the fast modes of the two hydrogen bonds involved in the cyclic dimer, and the direct and indirect damping of the fast‐stretching modes of the hydrogen bonds and of the bending modes. The infrared spectral density was calculated within the linear response theory by Fourier transform of the autocorrelation function of the transition dipole moment operator of the fast mode. Numerical results show that mixing of all these effects allows satisfactory reproduction of the main features of the experimental IR line shapes of crystalline H‐ and D‐bonded 2‐furoic acid at liquid‐nitrogen temperature and for different polarizations. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

A Theoretical Study of Correlation between Hydrogen‐Bond Stability and J‐Coupling through a Hydrogen Bond

trans‐Hydrogen‐bond hyperfine splitting via magnetic interaction, which is observed as J‐coupling in NMR experiments, was theoretically studied. trans‐Hydrogen‐bond hyperfine splitting should be closely related to the orbital interaction between the lone‐pair orbital of the H‐bond acceptor and the antibond orbital of the H‐bond donor. A linear relationship was observed between magnetic interaction hyperfine splitting through a H‐bond and the H‐bond strength. The relationship was dependent on the type of the nucleus forming the H‐bond; linear correlation was observed in N H⋅⋅⋅O/N type or O H⋅⋅⋅N type H‐bonded complexes, but not in O H⋅⋅⋅O type H‐bonded complexes.     

Ab initio study of the topology of the charge distribution of H3SiO(H)AlH3 conformers

The topologic properties of the electronic charge distribution of conformers of H₃SiO(H)AlH₃ molecule hydroxyl groups of zeolites are reported. The studied properties—total density, Laplacian density, and bond ellipticity—were evaluated at the position of the critical points of the O Si, O Al, and O H bonds, by using Hartree–Fock and second‐order Møller–Plesset levels of theory, and the STO/6‐31+G(d,p) standard basis set. For the H₃SiO(H)AlH₃ molecule, four conformers are identified. It is demonstrated that for these conformers, the total density and Laplacian density remain almost constant by effect of the rotations of the T H bonds, T=(Si, Al), around the corresponding O T bonds, respectively. However, these rotations induce sensible variations in the ellipticity at the position of the critical point of the O Al bonds, which are reflected in the OH bond distance, OH vibrational mode, and the stabilization energy of conformers. These results lead to a linear relationship between the magnitude of the bond ellipticity at the critical point of the O Al bonds and the frequency values of the OH bonds, with a correlation coefficient of r²=0.98. In addition, a good linear relationship between the ellipticity of the O Al bond and the pattern of the stabilization energy of conformers was also found. © 1999 John Wiley & Sons, Inc. Int J Quant Chem 76: 1–9, 2000     

Rhodium(III)‐Catalyzed C?C and C?O Coupling of Quinoline N‐Oxides with Alkynes: Combination of C?H Activation with O‐Atom Transfer

[Cp*Rh^III]‐catalyzed C H activation of arenes assisted by an oxidizing N O or N N directing group has allowed the construction of a number of hetercycles. In contrast, a polar N O bond is well‐known to undergo O‐atom transfer (OAT) to alkynes. Despite the liability of N O bonds in both C H activation and OAT, these two important areas evolved separately. In this report, [Cp*Rh^III] catalysts integrate both areas in an efficient redox‐neutral coupling of quinoline N‐oxides with alkynes to afford α‐(8‐quinolyl)acetophenones. In this process the N O bond acts as both a directing group for C H activation and as an O‐atom donor.     

Ab Initio energetics of Si?O bond cleavage

A multilevel approach that combines high‐level ab initio quantum chemical methods applied to a molecular model of a single, strain‐free Si O Si bridge has been used to derive accurate energetics for Si O bond cleavage. The calculated Si O bond dissociation energy and the activation energy for water‐assisted Si O bond cleavage of 624 and 163 kJ mol⁻¹, respectively, are in excellent agreement with values derived recently from experimental data. In addition, the activation energy for H₂O‐assisted Si O bond cleavage is found virtually independent of the amount of water molecules in the vicinity of the reaction site. The estimated reaction energy for this process including zero‐point vibrational contribution is in the range of −5 to 19 kJ mol⁻¹. © 2017 Wiley Periodicals, Inc.     

Ruthenium‐Catalyzed Cascade C?H Functionalization of Phenylacetophenones

Three orthogonal cascade C H functionalization processes are described, based on ruthenium‐catalyzed C H alkenylation. 1‐Indanones, indeno indenes, and indeno furanones were accessed through cascade pathways by using arylacetophenones as substrates under conditions of catalytic [{Ru(p‐cymene)Cl₂}₂] and stoichiometric Cu(OAc)₂. Each transformation uses C H functionalization methods to form C C bonds sequentially, with the indeno furanone synthesis featuring a C O bond formation as the terminating step. This work demonstrates the power of ruthenium‐catalyzed alkenylation as a platform reaction to develop more complex transformations, with multiple C H functionalization steps taking place in a single operation to access novel carbocyclic structures.     

Quantum chemical topology: The electronic structure of the alkaline nitrites MONO (M = Li,Na, K) studied by means of topological analysis of the electron localization function

In the search of the protocovalent bonding, previously recognized in the nitrous acid (HONO), a nature of the chemical bonds in the alkaline nitrites MONO (M = Li, Na, K) has been studied by means of the topological analysis of the Electron Localization Function (ELF) and Electron Localizability Indicator (ELI‐D). Calculations carried out with the B3LYP and MP2(full) methods, in conjunction with the aug‐cc‐pVTZ and 6‐311++G(3df,3pd) basis sets, revealed the cis (C_2v, more stable) and trans (C_s) isomers as minima on PES. Alkaline nitrites consist of the alkali metal cation M^δ+ interacting, mainly via electrostatic forces, with the nitrite anion [ONO]^δ− (δ ≈ 1e). The covalent N O bonds are characterized by disynaptic basins V(N,O) with the basin populations: 1.58÷1.62e for cis‐M^δ+[ONO]^δ− but 1.39÷1.49e for single N O bond and 1.81÷1.87e for formally double NO bond in trans M^δ+[O NO]^δ−. The protocovalent nitrogen–oxygen bond has not been observed. The N O bonds are slightly polarized towards the nitrogen atom with the polarity index p_NO ≤ 0.12. Two different sets of the hybrid (Lewis) structures are compared leading to different pictures of the bonding. According to NBO data there is a delocalization between the single N O and double NO type bonds, meanwhile results of the ELF analysis emphasize an electron delocalization between the single N O and ionic O⁻N⁺ hybrids. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Coupling selectivity in the radical‐controlled oxidative polymerization of 4‐phenoxyphenol catalyzed by (1,4,7‐triisopropyl‐1,4,7‐triazacyclononane)copper(II) complex

Various effects on the coupling selectivity of the oxidative polymerization of 4‐phenoxyphenol catalyzed by (1,4,7‐triisopropyl‐1,4,7‐triazacyclononane)copper(II) halogeno complex [Cu(tacn)X₂] are described. With respect to the amount of the catalyst and the nature of the halide ion (X) of Cu(tacn)X₂, the coupling selectivity hardly changed. The Cu(tacn) catalyst possessed a turnover number greater than 1860. As the temperature of the reaction and the polarity of the reaction solvent were elevated, the C O coupling at the o‐position increased, but the C C coupling was not involved. For the polymerization in toluene at 80 °C, poly(1,4‐phenylene oxide), obtained as a methanol‐insoluble part, showed the highest number‐average molecular weight of 4000 with a melting point (T_m) of 195 °C. Only a slight change in the coupling selectivity was observed in the presence or absence of hindered amines as the base. Surprisingly, however, the C O selectivity decreased from 100 to 24% with less hindered amines, indicating that the selectivity drastically changed from a preference for C O coupling to a preference for C C coupling. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 4792–4804, 2000     

Theoretical study of hydrogen and deuterium bond in glutaric acid crystal dimer

In the spirit of the work of Blaise et al. [J Chem Phys, 2005, 122, 64306], we have extended their quantum theoretical approach by accounting for the intrinsic anharmonicity of the slow frequency mode, which is described by a Morse potential to reproduce the polarized infrared line shapes of glutaric acid dimer and its deuterium derivative at different temperatures. In this approach, the adiabatic approximation is performed for each separate H‐bond bridge of the dimer, and a strong nonadiabatic correction is introduced into the model via the resonant exchange between the fast mode excited states of the two moieties. Working within the strong anharmonic coupling theory, according to which the high‐frequency mode is anharmonically coupled to the H‐bond bridge, this approach incorporated the Davydov coupling between the excited states of the two moieties, the quantum direct and indirect dampings and the intrinsic anharmonicity of the H‐bond bridge. The spectral density was obtained within the linear response theory by Fourier transform of the damped autocorrelation functions. The numerical results show that the theoretical line shapes of the glutaric acid dimer are in fairly good agreement with the experimental ones. Using a minimum number of independent parameters, this theoretical approach fits correctly the experimental line shapes of the glutaric acid dimer. The effects of deuteration and temperature have been successfully reproduced by our calculations. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Use of the Wilkinson Catalyst for the ortho‐C?H Heteroarylation of Aromatic Amines: Facile Access to Highly Extended π‐Conjugated Heteroacenes for Organic Semiconductors

An unprecedented catalytic system composed of the Wilkinson catalyst [Rh(PPh₃)₃Cl] and CF₃COOH enabled the highly regioselective cross‐coupling of aromatic amines with a variety of heteroarenes through dual C H bond cleavage. This protocol provided a facile and rapid route from readily available substrates to (2‐aminophenyl)heteroaryl compounds, which may be conveniently transformed into highly extended π‐conjugated heteroacenes. The experimental studies and calculations showed that thianaphtheno[3,2‐b]indoles have large HOMO–LUMO energy gaps and low‐lying HOMO levels, and could therefore potentially be high‐performance organic semiconductors. Herein we report the first use of a rhodium(I) catalyst for oxidative C H/C H coupling reactions. The current innovative catalyst system is much less expensive than [RhCp*Cl₂]₂/AgSbF₆ and could open the door for the application of this approach to other types of C H activation processes.     

Ruthenium–Porphyrin‐Catalyzed Diastereoselective Intramolecular Alkyl Carbene Insertion into C?H Bonds of Alkyl Diazomethanes Generated In Situ from N‐Tosylhydrazones

With a ruthenium–porphyrin catalyst, alkyl diazomethanes generated in situ from N‐tosylhydrazones efficiently underwent intramolecular C(sp³) H insertion of an alkyl carbene to give substituted tetrahydrofurans and pyrrolidines in up to 99 % yield and with up to 99:1 cis selectivity. The reaction displays good tolerance of many functionalities, and the procedure is simple without the need for slow addition with a syringe pump. From a synthetic point of view, the C H insertion of N‐tosylhydrazones can be viewed as reductive coupling between a CO bond and a C H bond to form a new C C bond, since N‐tosylhydrazones can be readily prepared from carbonyl compounds. This reaction was successfully applied in a concise synthesis of (±)‐pseudoheliotridane.     

Kinetic Study and NBO Analysis of the Dehydrogenation Mechanism of Five‐membered Ring Heterocyclic 2,5‐Dihydro‐[furan,thiophene, selenophene

The theoretical study of the dehydrogenation of 2,5‐dihydro‐[furan ( 1 ), thiophene ( 2 ), and selenophene ( 3 )] was carried out using ab initio molecular orbital (MO) and density functional theory (DFT) methods at the B3LYP/6‐311G**//B3LYP/6‐311G** and MP2/6‐311G**//B3LYP/6‐311G** levels of theory. Among the used methods in this study, the obtained results show that B3LYP/6‐311G** method is in good agreement with the available experimental values. Based on the optimized ground state geometries using B3LYP/6‐311G** method, the natural bond orbital (NBO) analysis of donor‐acceptor (bond‐antibond) interactions revealed that the stabilization energies associated with the electronic delocalization from non‐bonding lone‐pair orbitals [LP(e)_X3] to δ*_{C(1)  H(2)} antibonding orbital, decrease from compounds 1 to 3 . The LP(e)_X3→δ*_{C(1)  H(2)} resonance energies for compounds 1 – 3 are 23.37, 16.05 and 12.46 kJ/mol, respectively. Also, the LP(e)_X3→δ*_{C(1)  H(2)} delocalizations could fairly explain the decrease of occupancies of LP(e)_X3 non‐bonding orbitals in ring of compounds 1 – 3 ( 3 > 2 > 1 ). The electronic delocalization from LP(e)_X3 non‐bonding orbitals to δ*_{C(1)  H(2)} antibonding orbital increases the ground state structure stability, Therefore, the decrease of LP(e)_X3→δ*_{C(1)  H(2)} delocalizations could fairly explain the kinetic of the dehydrogenation reactions of compounds 1 – 3 (k ₁ >k ₂ >k ₃ ). Also, the donor‐acceptor interactions, as obtained from NBO analysis, revealed that the (_C(4)C(7)→δ*_{C(1)  H(2)} resonance energies decrease from compounds 1 to 3 . Further, the results showed that the energy gaps between (_C(4)C(7) bonding and δ*_{C(1)  H(2)} antibonding orbitals decrease from compounds 1 to 3 . The results suggest also that in compounds 1 – 3 , the hydrogen eliminations are controlled by LP(e)→δ* resonance energies. Analysis of bond order, natural bond orbital charges, bond indexes, synchronicity parameters, and IRC calculations indicate that these reactions are occurring through a concerted and synchronous six‐membered cyclic transition state type of mechanism.     

Hydride Ligands Make the Difference: Density Functional Study of the Mechanism of the Murai Reaction Catalyzed by [Ru(H)2(H2)2(PR3)2] (R=cyclohexyl)

The catalytic cycle for the Murai reaction at room temperature between ethylene and acetophenone catalyzed by [Ru(H)₂(H₂)₂(PMe₃)₂] has been studied computationally at the B3PW91 level. The active species is the ruthenium dihydride complex [Ru(H)₂(PMe₃)₂]. Coordination of the ketone group to Ru induces very easy C H bond cleavage. Coordination of ethylene after ketone de-coordination, followed by ethylene insertion into a Ru H bond, creates the Ru ethyl bond. Isomerization of the complex to a Ru^IV intermediate creates the geometry adapted to C C bond formation. Re-coordination of the ketone before the C C coupling lowers the energy of the corresponding TS. The highest point on the potential energy surface (PES) is the TS for the isomerization to the Ru^IV intermediate, which prepares the catalyst geometry for the C C coupling step. Inclusion of dispersion corrections significantly lowers the height of the overall activation barrier. The actual bond cleavage and bond forming processes are associated to low activation barriers because of the presence of hydrogen atoms around the Ru center. They act as redox buffers through formation and breaking of H H bonds in the coordination sphere. This flexibility allows optimal repartition of the various ligands according to the change in stereoelectronic demands along the catalytic cycle.     

Alkyne Insertion into the M?P and M?H Bonds (M=Pd,Ni, Pt,and Rh): A Theoretical Mechanistic Study of the C?P and C?H Bond‐Formation Steps

In hydrogen‐metal‐phosphorus (H M P) transition metal complexes (proposed as intermediates of H P bond addition to alkynes in the catalytic hydrophosphorylation, hydrophosphinylation, and hydrophospination reactions), alkyne insertion into the metal‐hydrogen bond was found much more facile compared to alkyne insertion into the metal‐phosphorus bond. The conclusion was verified for different metals (Pd, Ni, Pt, and Rh), ligands, and phosphorus groups at various theory levels (B3LYP, B3PW91, BLYP, MP2, and ONIOM). The relative reactivity of the metal complexes in the reaction with alkynes was estimated and decreased in the order of Ni>Pd>Rh>Pt. A trend in relative reactivity was established for various types of phosphorus groups: PR₂>P(O)R₂>P(O)(OR)₂, which showed a decrease in rate upon increasing the number of the oxygen atoms attached to the phosphorus center.     

Polarized Infrared Spectra of the H(D) Bond in 2‐Thiophenic Acid Crystals: A Spectroscopic and Computational Study

Polarized IR spectra of the hydrogen bond in 2‐thiophenic acid crystals, isotopically neat and of mixed H/D isotopic content, are measured at 298 and 77 K in the “residual” νO? H and νO? D band frequency ranges. This crystalline system provides spectra in these band frequency ranges that differ considerably in intensity distribution from the spectra of other H‐bonded centrosymmetric dimeric species. This change in the spectral properties of the crystals is probably due to the influence of the sulfur atoms from the thiophene aromatic rings, which are directly linked to the (COOH)2 or (COOD)2 cycles. The magnitude of this effect correlates with the net electronic charge distribution at the 2‐ and 3‐positions of substituted thiophene rings, which in a different way influences the electron charge density in the hydrogen bonds of the two thiophenic acid isomers. The experimental results for spectral structures are compared to predictions obtained with theoretical calculations involving the combined effects of anharmonicities, Davydov coupling, Fermi resonances, and direct and indirect relaxations within the framework of the linear response theory. Numerical results show that mixing of all these effects allows satisfactory reproduction of the main features of the experimental IR line shapes of crystalline H‐ and D‐bonded 2‐thiophenic acid at room and liquid‐nitrogen temperatures.     

GIAO,DFT, AIM and NBO analysis of the N?H···O intramolecular hydrogen‐bond influence on the 1J(N,H) coupling constant in push–pull diaminoenones

In the series of diaminoenones, large high‐frequency shifts of the ¹H NMR of the N? H group in the cis‐position relative to the carbonyl group suggests strong N? H···O intramolecular hydrogen bonding comprising a six‐membered chelate ring. The N? H···O hydrogen bond causes an increase of the ¹J(N,H) coupling constant by 2–4 Hz and high‐frequency shift of the ¹⁵N signal by 9–10 ppm despite of the lengthening of the relevant N? H bond. These experimental trends are substantiated by gauge‐independent atomic orbital and density functional theory calculations of the shielding and coupling constants in the 3,3‐bis(isopropylamino)‐1‐(aryl)prop‐2‐en‐1‐one (12) for conformations with the Z‐ and E‐orientations of the carbonyl group relative to the N? H group. The effects of the N? H···O hydrogen‐bond on the NMR parameters are analyzed with the atoms‐in‐molecules (AIM) and natural bond orbital (NBO) methods. The AIM method indicates a weakening of the N? H···O hydrogen bond as compared with that of 1,1‐di(pyrrol‐2‐yl)‐2‐formylethene (13) where N? H···O hydrogen bridge establishes a seven‐membered chelate ring, and the corresponding ¹J(N,H) coupling constant decreases. The NBO method reveals that the LP(O) →σ*_{N? H} hyperconjugative interaction is weakened on going from the six‐membered chelate ring to the seven‐membered one due to a more bent hydrogen bond in the former case. A dominating effect of the N? H bond rehybridization, owing to an electrostatic term in the hydrogen bonding, seems to provide an increase of the ¹J(N,H) value as a consequence of the N? H···O hydrogen bonding in the studied diaminoenones. Copyright © 2010 John Wiley & Sons, Ltd.     

Density functional theory and topological analysis on the hydrogen bonding interactions in cysteine‐thymine complexes

Hydrogen bonding interactions between amino acids and nucleic acid bases constitute the most important interactions responsible for the specificity of protein binding. In this study, complexes formed by hydrogen bonding interactions between cysteine and thymine have been studied by density functional theory. The relevant geometries, energies, and IR characteristics of hydrogen bonds (H‐bonds) have been systematically investigated. The quantum theory of atoms in molecule and natural bond orbital analysis have also been applied to understand the nature of the hydrogen bonding interactions in complexes. More than 10 kinds of H‐bonds including intra‐ and intermolecular H‐bonds have been found in complexes. Most of intermolecular H‐bonds involve O (or N) atom as H‐acceptor, whereas the H‐bonds involving C or S atom usually are weaker than other ones. Both the strength of H‐bonds and the structural deformation are responsible for the stability of complexes. Because of the serious deformation, the complex involving the strongest H‐bond is not the most stable structures. Relationships between H‐bond length (ΔR_X‐H), frequency shifts (Δv), and the electron density (ρ_b) and its Laplace (?²ρ_b) at bond critical points have also been investigated. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

HNgBeF3 (Ng = Ar‐Rn): Superhalogen‐supported noble gas insertion compounds

Ab initio and density functional theory‐based calculations are performed to study the structure, stability, and nature of bonding of superhalogen‐supported noble gas (Ng) compounds of the type HNgY where (Ng = Ar‐Rn; Y = BeF₃). Here, BeF₃ acts as the superhalogen. Calculations show that the HNgBeF₃ spontaneously dissociates into product following the dissociation channels: HNgBeF₃ → HBeF₃ + Ng and HNgBeF₃ → Ng + HF + BeF₂. The transition states are optimized and the energy barriers are computed to show the metastable behavior of HNgBeF₃. HNgBeF₃ molecules are kinetically stable with respect to the first dissociation process having energy barriers of 1.0, 5.0, 10.6, and 13.9 kcal/mol for Ar, Kr, Xe, and Rn analogues, respectively, at CCSD(T)/Aug‐cc‐pVTZ level. These calculations suggest that the HXeBeF₃ and HRnBeF₃ can be shown to be stable up to ∼100 K temperature with a half‐life of ∼10² seconds. The nature of H Ng and two different types of Ng F bonds in HNgBeF₃ molecules is explored through the natural bond orbital and electron density analyses. The large Wiberg bond index (WBI) values for the H Ng bond indicate the formation of almost a single bond in between H‐atoms and Ng‐atoms, whereas small WBI values for the two Ng F bonds indicate a noncovalent interaction in between them. The electron density analysis further supports the covalency of the H Ng bond and noncovalent interaction in the two Ng F bonds in HNgBeF₃.     

Iridium‐Catalyzed Regioselective Silylation of Aromatic and Benzylic C?H Bonds Directed by a Secondary Amine

Reported herein is an iridium‐catalyzed, regioselective silylation of the aromatic C H bonds of benzylamines and the benzylic C H bonds of 2,N‐dialkylanilines. In this process, (hydrido)silyl amines, generated in situ by dehydrogenative coupling of benzylamine or aniline with diethylsilane, undergo selective silylation at the C H bond γ to the amino group. The products of this silylation are suitable for subsequent oxidation, halogenation, and cross‐coupling reactions to deliver benzylamine and arylamine derivatives.     

An Unprecedented‐Type Intramolecular Redox Reaction of Solid Tetraamminecopper(2+) Bis(permanganate) ([Cu(NH3)4](MnO4)2) – A Low‐Temperature Synthesis of Copper Dimanganese Tetraoxide‐Type (CuMn2O4) Nanocrystalline Catalyst Precursors

Tetraamminecopper(2+) bis(permanganate) ([Cu(NH₃)₄](MnO₄)₂; 1 ) was prepared, and its properties were studied in both aqueous solution and the solid phase. The presence of H‐bond interactions between the ammonia ligand of the complex cation and an O‐atom of the permanganate ion was detected by IR and Raman methods. The solid‐phase thermal deammoniation of 1 led to an unusual intramolecular redox reaction between the Mn O⋅⋅⋅H N linkage with formation of NH₄NO₃ and CuMn₂O₄‐type mixed oxides instead of stepwise deammoniation, even below 100°. The thermal deammoniation of 1 in aqueous solution led, instead of to hydrated copper(2+) bis(permanganate), to the formation of NH₄MnO₄ ( 2 ). Since the temperature of the thermal deammoniation of 1 is lower than the decomposition temperature of the permanganate ion, the regulated solid‐phase decomposition of 1 allowed preparation of CuMn₂O₄‐type oxides with mixing of copper and manganese at the atomic level.