Theoretical study on the interaction of sulfur‐ and aminopyridine‐containing chelating resins with Hg(II) and Pb(II)

The geometries and energetics of complexes of Hg(II) and Pb(II) with sulfur‐ and aminopyridine‐containing chelating resin including crosslinked polystyrene immobilizing 2‐aminopyridine via sulfur‐containing (PVBS‐AP), sulfoxide‐containing (PVBSO‐AP), and sulfone‐containing (PVBSO₂‐AP) spacer arms have been investigated theoretically, and thus interactions of the metal ions with chelating resins were evaluated. The results indicate that PVBS‐AP behaves as a tridentate ligand to coordinate with the metal ions by S and two N atoms to form chelating compounds with S atom playing a dominant role in the coordination, whereas PVBSO‐AP and PVBSO₂‐AP interact with metal cations, respectively, in a tricoordinate manner by O and two N atoms forming chelating complexes. Furthermore, it is revealed that O and N2 atoms of PVBSO‐AP are the main contributor of coordination to Hg(II), whereas N2 atom of PVBSO₂‐AP is mainly responsible for the coordination to Hg(II). For PVBSO‐AP‐Pb²⁺ and PVBSO₂‐AP‐Pb²⁺ complex, the coordination is dominated by the synergetic effect of N1, N2, and O atoms. Natural bond orbital and second‐order perturbation analyses suggest that the charge transfer from the chelating resins to metal ions is mainly dominated by the interactions of lone pair of electrons of the donor atoms with the unoccupied orbitals of metal ions. Hg(II) complexes exhibit larger binding energies than the corresponding Pb(II) complexes, implying the chelating resins exhibit higher affinity toward Hg(II), which is consistent with the experimental results. Combined the theoretical and experimental results, further understanding of the structural information of the complexes and the coordination mechanism was achieved. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Density functional theory and topological analysis on the hydrogen bonding interactions in cysteine‐thymine complexes

Hydrogen bonding interactions between amino acids and nucleic acid bases constitute the most important interactions responsible for the specificity of protein binding. In this study, complexes formed by hydrogen bonding interactions between cysteine and thymine have been studied by density functional theory. The relevant geometries, energies, and IR characteristics of hydrogen bonds (H‐bonds) have been systematically investigated. The quantum theory of atoms in molecule and natural bond orbital analysis have also been applied to understand the nature of the hydrogen bonding interactions in complexes. More than 10 kinds of H‐bonds including intra‐ and intermolecular H‐bonds have been found in complexes. Most of intermolecular H‐bonds involve O (or N) atom as H‐acceptor, whereas the H‐bonds involving C or S atom usually are weaker than other ones. Both the strength of H‐bonds and the structural deformation are responsible for the stability of complexes. Because of the serious deformation, the complex involving the strongest H‐bond is not the most stable structures. Relationships between H‐bond length (ΔR_X‐H), frequency shifts (Δv), and the electron density (ρ_b) and its Laplace (?²ρ_b) at bond critical points have also been investigated. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Preparation and characterization of polyphenylene sulfide–based chelating resin–functionalized 2‐amino‐1,3,4‐thiadiazole for selective removal Hg(II) from aqueous solutions

A novel chelating resin (PPS‐ATD) containing N and S elements was prepared through the chloromethylation of polyphenylene sulfide resin and subsequent functionalization with 2‐amino‐1,3,4‐thiadiazole (ATD). The structure of PPS‐ATD was systematically characterized and analyzed by the Fourier transform infrared spectroscopy, elemental analysis, thermogravimetric analysis, scanning electron microscope, and energy dispersive spectrometer. The adsorption performance of PPS‐ATD was evaluated by batch methods at different pH, temperature, adsorption time, and initial concentration, and the results showed that the PPS‐ATD exhibited high adsorption capacity (197.79 mg·g⁻¹ at 298 K) and selectivity for Hg(II). The adsorption of PPS‐ATD for Hg(II) was well fitted by the Langmuir isotherm model, and the adsorption process was endothermic. After 5 consecutive regeneration cycles, no obvious loss in the adsorption capacity of the PPS‐ATD was found, which implied that the PPS‐ATD had great application prospects in the treatment of mercury‐containing wastewater.     

Theoretical investigation on charge‐assisted halogen bonding interactions in the complexes of bromocarbons with some anions

A series of dimeric complexes formed between bromocarbon molecules and two anions (Br^? and CN^?) have been investigated by using MP2 method. The quantum theory of atoms in molecules (QTAIM) and the second‐order perturbation natural bond orbital (NBO) approaches were applied to analyze the electron density distributions of these complexes and to explore the nature of charge‐assisted halogen bonding interactions. As anticipated, these interactions are significantly stronger relative to the corresponding neutral ones. The results derived from ab initio calculations described herein reveal a major contribution from the electrostatic interaction on the stability of the systems considered. Beside the electrostatic interaction, the charge‐transfer force and the second‐order orbital interaction also play an important role in the formation of the complexes, as a NBO analysis suggested. The presence of halogen bonds in the complexes has been identified in terms of the QTAIM methodology, and several linear relationships have been established to provide more insight into charge‐assisted halogen bonding interactions. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Isatin‐Schiff base copper(II) complexes—A DFT study of the metal‐ligand bonding situation

Herein, we report results of calculations based on density functional theory (BP86/TZVP) of a set of isatin‐Schiff base copper(II) and related complexes, 1‐12, that have shown significant pro‐apoptotic activity toward diverse tumor cells. The interaction of the copper(II) cation with different ligands has been investigated at the same level of theory. The strength and character of the Cu(II)‐L bonding was characterized by metal‐ligand bond lengths, vibrational frequencies, binding energies, ligand deformation energies, and natural population analysis. The metal‐ligand bonding situation was also characterized by using two complementary topological approaches, the quantum theory of atoms‐in‐molecules (QTAIM) and the electron localization function (ELF). The calculated electronic g‐tensor and hyperfine coupling constants present significant agreement with the EPR experimental data. The calculated parameters pointed to complex 10 as the most stable among the isatin‐Schiff base copper(II) species, in good agreement with experimental data that indicate this complex as the most reactive in the series. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

多核过渡金属配合物自旋阻挫的理论研究

区别于双核配合物，自旋阻挫是多核配合物重要的磁现象之一．在分子磁体系中，自旋阻挫引起体系基态的多变和简并以及可能的基态自旋中间值等特征．简要地介绍多核配合物磁耦合竞争自旋阻挫的理论研究进展．     

Intramolecular hydrogen bonding in 3‐imino‐propenylamine: Theoretical investigations

Intramolecular H‐bonds existing for derivatives of 3‐imino‐propenylamine have been studied using the B3LYP/6‐311++G** level of theory. The nature of these interactions, known as resonance‐assisted hydrogen bonds, has been discussed. Vibrational frequencies for α‐derivatives were calculated at the same level of theory. The topological properties of the electron density distributions for N? H···N intramolecular bridges have been analyzed in terms of the Bader theory of atoms in molecules (AIM). Calculation for 3‐imino‐propenylamine derivatives in water solution were also carried out at B3LYP/6‐311++G** level of theory. Finally, the analysis of hydrogen bond in this molecule and their derivatives by quantum theory of natural bond orbital methods fairly support the ab initio results. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Determination of conditional stability constants for some divalent transition metal ion‐EDTA complexes by electrospray ionization mass spectrometry

Conditional stability constants of coordination complexes comprising divalent transition metals, Cu²⁺, Ni²⁺, Zn²⁺, Co²⁺, and ethylenediaminetetraacetic acid (EDTA) were determined utilizing electrospray ionization mass spectrometry. The deviation of signal response of a reference complex was monitored at addition of a second metal ion. The conditional stability constant for the competing metal was then determined through solution equilibria equations. The method showed to be applicable to a system where Co²⁺ and Zn²⁺ competed for EDTA at pH 5. When Cu²⁺ and Ni²⁺ competed for EDTA, the equilibrium changed over time. This change was shown to be affected in rate and size by the type of organic solvent added. In this work, 30% of either methanol or acetonitrile was used. It was found that if calibration curves are prepared for both metal complexes in solution and the measurements are repeated with sufficient time space, any change in equilibrium of sample solutions will be discovered. Copyright © 2014 John Wiley & Sons, Ltd.     

Density functional calculation of core‐electron binding energies of isomers of C3H6O2 and C3H5NO

The core‐electron binding energies of six isomers of C₃H₆O₂ and four isomers of C₃H₅NO were calculated by a DFT/uGTS/scaled‐pVTZ approach. An average absolute deviation from experiment of 0.15 eV was found for 14 C, N, and O 1s energies. The results confirm the distinctive nature of the X‐ray photoelectron spectra (XPS) of isomers and support the use of electron spectroscopy complemented by accurate theoretical predictions as a tool for chemical analysis. © 1999 John Wiley & Sons, Inc. Int J Quant Chem 76: 44–50, 2000     

Synthesis and application of modified poly (styrene‐alt‐maleic anhydride) networks as a nano chelating resin for uptake of heavy metal ions

A chelating resin based on modified poly (styrene‐alt‐maleic anhydride) with 3‐aminobenzoic acid was synthesized. This modified resin was further reacted by 1,2‐diaminoethane or 1,3‐diaminopropane in the presence of ultrasonic irradiation to prepare tridimensional chelating resin for the removal of heavy metal ions from aqueous solutions. The adsorption behavior of Fe(II), Cu(II), Zn(II) and Pb(II) ions was investigated by synthesized chelating resins in various pH. Among the synthesized resins, CSMA‐AB1 and CSMA‐AB2 demonstrated a high affinity for the selected metal ions compared to SMA‐AB, and the order of removal percentage changes as follow: Fe(II) > Cu(II) > Zn(II) > Pb(II). The adsorption of all metal ions in acidic medium was moderate, and it was favored at the pH value of 6 and 7. Also, the prepared resins were examined for removal of metal ions from industrial wastewater and were shown to have a very efficient adsorption in the case of Cu(II), Fe(II) and Pb(II); however, the adsorption of Zn(II) was lower than others. The resin was characterized by Fourier transform infrared spectroscopy, scanning electron microscopy, X‐ray diffraction analysis and thermogravimetric analysis/derivative thermogravimetry. Copyright © 2012 John Wiley & Sons, Ltd.     

NMR 3J(C1,H3) couplings in 1‐X‐bicyclo[1.1.1]pentanes. FPT–DFT and NBO studies of hyperconjugative interactions and heavy atom substituent effects

In this work a rationalization of the very large substituent effects on ³J(C₁,H₃) couplings in 1‐X‐bicyclo[1.1.1]pentanes is presented. The Fermi contact contribution to such couplings was calculated in a series of 13 X‐derivatives within the DFT–B3LYP framework using the finite perturbation theory. Core electrons for atoms beyond the Second Row were taken into account using effective core potentials. Calculated couplings are in very good agreement with experimental values. The role played by hyperconjugative interactions involving bonds or antibonds belonging to the coupling pathway are studied using the NBO approach. Heavy atom contribution to substituent effects on ³J(C₁,H₃) couplings was estimated as small. This contrasts notably with trends observed in the corresponding ¹³C substituent chemical shifts, SCSs. The latter were estimated comparing for X=Cl, Br, I, SnMe₃, calculated SCSs with their experimental values. Such estimations are in line with explicit calculations of the spin‐orbit contribution reported in the literature for smaller compounds. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1615–1621, 2001     

Novel salep‐based chelating hydrogel for heavy metal removal from aqueous solutions

A novel optimized chelating hydrogel was synthesized via graft copolymerization of acrylamide and 2‐hydroxyethyl methacrylate (as two‐dentate chelating co‐monomer) onto salep (a multicomponent polysaccharide obtained from dried tubers of certain natural terrestrial orchids) using N,N′‐methylenebisacrylamide as a crosslinker and ammonium persulfate as an initiator. Reaction parameters (N,N′‐methylenebisacrylamide and ammonium persulfate amounts as well as acrylamide/2‐hydroxyethyl methacrylate weight ratio) affecting the water absorption of the chelating hydrogel were optimized using a systematic method to achieve a hydrogel with high swelling capacity as possible. Heavy metal ion adsorption capacity of the optimized hydrogel for metal ions [Cu (II), Pb (II), Cd (II), and Cr (III)] were investigated in aqueous media containing different concentrations of these ions (5–50 ppm). The results showed that the hydrogel have great potential for heavy metal removal from aqueous solutions. The hydrogel formation was confirmed by Fourier transform infrared spectroscopy, and surface morphology study of the hydrogel was performed by scanning electron microscope. Copyright © 2016 John Wiley & Sons, Ltd.     

Chemistry of transition‐metal complexes containing functionalized phosphines: synthesis and structural analysis of rhodium(I) complexes containing allyl and cyanoalkylphosphines

A series of related acetylacetonate–carbonyl–rhodium compounds substituted by functionalized phosphines has been prepared in good to excellent yields by the reaction of [Rh(acac)(CO)₂] (acac is acetylacetonate) with the corresponding allyl‐, cyanomethyl‐ or cyanoethyl‐substituted phosphines. All compounds were fully characterized by ³¹P, ¹H, ¹³C NMR and IR spectroscopy. The X‐ray structures of (acetylacetonato‐κ²O,O′)(tert‐butylphosphanedicarbonitrile‐κP)carbonylrhodium(I), [Rh(C₅H₇O₂)(CO)(C₈H₁₃N₂)] or [Rh(acac)(CO)(^tBuP(CH₂CN)₂}] ( 2b ), (acetylacetonato‐κ²O,O′)carbonyl[3‐(diphenylphosphanyl)propanenitrile‐κP]rhodium(I), [Rh(C₅H₇O₂)(C₁₅H₁₄N)(CO)] or [Rh(acac)(CO){Ph₂P(CH₂CH₂CN)}] ( 2h ), and (acetylacetonato‐κ²O,O′)carbonyl[3‐(di‐tert‐butylphosphanyl)propanenitrile‐κP]rhodium(I), [Rh(C₅H₇O₂)(C₁₁H₂₂N)(CO)] or [Rh(acac)(CO){^tBu₂P(CH₂CH₂CN)}] ( 2i ), showed a square‐planar geometry around the Rh atom with a significant trans influence over the acetylacetonate moiety, evidenced by long Rh—O bond lengths as expected for poor π‐acceptor phosphines. The Rh—P distances displayed an inverse linear dependence with the coupling constants J_P‐Rh and the IR ν(C[triple‐bond]O) bands, which accounts for the Rh—P electronic bonding feature (poor π‐acceptors) of these complexes. A combined study from density functional theory (DFT) calculations and an evaluation of the intramolecular H…Rh contacts from X‐ray diffraction data allowed a comparison of the conformational preferences of these complexes in the solid state versus the isolated compounds in the gas phase. For 2b , 2h and 2i , an energy‐framework study evidenced that the crystal structures are mainly governed by dispersive energy. In fact, strong pairwise molecular dispersive interactions are responsible for the columnar arrangement observed in these complexes. A Hirshfeld surface analysis employing three‐dimensional molecular surface contours and two‐dimensional fingerprint plots indicated that the structures are stabilized by H…H, C…H, H…O, H…N and H…Rh intermolecular interactions.     

Theoretical studies on high energetic density nitramine explosives containing pyridine

The insensitive property of explosives containing pyridine is combined with the high energy of nitramine explosives,and the concept of new nitramine explosives containing pyridine is proposed,into which nitramine group with N N bonds is introduced as much as possible.Based on molecular structures of nitramine compounds containing pyridine,density functional theory(DFT) calculation method was applied to study designed molecules at B3LYP/6-31+G(d) level.The geometric and electronic structures,density,heats of formation(HOF),detonation performance and bond dissociation energies(BDE) were investigated and comparable to 1,3,5-trinitro-1,3,5-triazinane(RDX) and 1,3,5,7-tetranitro-1,3,5,7-tetrazocane(HMX).The simulation results reveal that molecules B and D perform similarly to traditionally used RDX.Molecule E outperform RDX,with performance that approach that of HMX and may be considered as potential candidate of high energy density compound(HEDC).These results provide basic information for molecular design of novel high energetic density compounds.     

Combined experimental and computational modeling studies on 4‐[(2‐hydroxy‐3‐methylbenzylidene) amino]‐1,5‐dimethyl‐2‐phenyl‐1,2‐dihydro‐3H‐pyrazol‐3‐one

The Schiff base compound, 4‐[(2‐hydroxy‐3‐methylbenzylidene)amino]‐1,5‐dimethyl‐2‐phenyl‐1,2‐dihydro‐3H‐pyrazol‐3‐one, has been synthesized and characterized by IR, UV–vis, and X‐ray single‐crystal determination. Molecular geometry from X‐ray experiment of the title compound in the ground state have been compared using the density functional method (B3LYP) with 6‐31G(d,p) basis set. Calculated results show that density functional theory (DFT) can well reproduce the structure of the title compound. The energetic behavior of the title compound in solvent media has been examined using B3LYP method with the 6‐31G(d,p) basis set by applying the Onsager and the polarizable continuum model (PCM). The results obtained with these methods reveal that the PCM method provided more stable structure than Onsager's method. By using TD‐DFT method, electronic absorption spectra of the title compound have been predicted and a good agreement with the TD‐DFT method and the experimental one is determined. The predicted nonlinear optical properties of the title compound are much greater than ones of urea. In addition, DFT calculations of the title compound, molecular electrostatic potential and NBO analysis were performed at B3LYP/6‐31G(d,p) level of theory. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Theoretical studies on the aromaticity of η-cyclopentadienyl cobalt dithiolene complexes

Some η⁵-cyclopentadienyl cobalt dithiolene complexes CpCoS₂C₂R₂ have been optimized at B3LYP/6-311++G(d) level. The optimized geometries agree well with experiment. The analyses of nature bond orbital and nucleus-independent chemical shift (NICS) at B3LYP/6-311++G(d) and GIAO-B3LYP/6-311++G(d) levels reveal the aromatic character of the η⁵-cyclopentadienyl cobalt dithiolene complexes. However, their aromaticity is weaker than that of the isolated . There are two reasons for the change of heterocyclic aromaticity of the metal dithiolene in the η⁵-cyclopentadienyl cobalt dithiolene complexes with respect to that of the isolated . The better equalization of bond lengths in the isolated cation is the first reason. The other reason is that the contribution to the NICS from the metallic cobalt atom is much larger in the isolated cation . The planar character of cyclopentadienyl is destroyed slightly in the complexes. At the same time, the size of cyclopentadienyl (Cp) becomes bigger than the isolated Cp⁻¹ and this is caused by the cobalt atom in the pentagon. The π-electron delocalization causes stronger aromaticity of the Cp in the complexes than that of the isolated Cp⁻¹.     

Structural studies and biological activity evaluation of Pd(II), Pt(II) and Ru(II) complexes containing N‐phenyl,N`‐(3‐triazolyl)thiourea

[MCl(H₂L)(OH₂)]·1.5H₂O (M = Pd(II) ( 1 ) and Pt(II) ( 2 )) and [Ru(H₂L)₂(OH₂)₂]·3H₂O ( 3 ) (H₃L: N‐phenyl, N`‐(3‐triazolyl)thiourea) were synthesized, characterized and tested for their antibacterial activities against Staphylococcus aureus and Escherichia coli bacteria. The thiourea derivative is coordinated to Mⁿ⁺ ions as a mono‐negatively N,S‐bidentate ligand via the enolization of C = S group and triazole N center. The density functional theory calculations reveal that presence of a water molecule in a trans position to triazole ring increased the stability of d⁸ metal ions complexes via the formation of strong Cl…NH intramolecular H‐bond. The cis‐Ru(II)‐isomer with two isoenergetically H₂L^? molecules are more stable than the trans‐analog. Coordination of H₃L to Ru(II) ion did not alter the toxicity of the free ligand, while the interaction with the d⁸ metal ions gave rise to inactive compounds.     

Density functional theory study of calix[4]arene‐N‐azacrown‐5, calix[4]arene‐N‐phenyl‐azacrown‐5, and their complexes with alkali‐metal cations: Na+, K+, and Rb+

Theoretical studies of 1,3‐alternate‐25,27‐bis(1‐methoxyethyl)calix[4]arene‐azacrown‐5 ( L₁ ), 1,3‐alternate‐25,27‐bis(1‐methoxyethyl)calix[4]arene‐N‐phenyl‐azacrown‐5 ( L₂ ), and the corresponding complexes M⁺/ L of L₁ and L₂ with the alkali‐metal cations: Na⁺, K⁺, and Rb⁺ have been performed using density functional theory (DFT) at B3LYP/6‐31G* level. The optimized geometric structures obtained from DFT calculations are used to perform natural bond orbital (NBO) analysis. The two main types of driving force metal–ligand and cation–π interactions are investigated. The results indicate that intermolecular electrostatic interactions are dominant and the electron‐donating oxygen offer lone pair electrons to the contacting RY* (1‐center Rydberg) or LP* (1‐center valence antibond lone pair) orbitals of M⁺ (Na⁺, K⁺, and Rb⁺). What's more, the cation–π interactions between the metal ion and π‐orbitals of the two rotated benzene rings play a minor role. For all the structures, the most pronounced changes in geometric parameters upon interaction are observed in the calix[4]arene molecule. In addition, an extra pendant phenyl group attached to nitrogen can promote metal complexation by 3D encapsulation greatly. In addition, the enthalpies of complexation reaction and hydrated cation exchange reaction had been studied by the calculated thermodynamic data. The calculated results of hydrated cation exchange reaction are in a good agreement with the experimental data for the complexes. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

Theoretical study of 3d‐metal mononitrides using DFT method

3d‐Metal mononitrides are studied using the density functional theory method. The lowest spin state for these dimers is obtained using the B3LYP hybrid functional with the 6‐311+G* basis set. The equilibrium geometries, vibrational frequencies, binding energies, Mulliken, and natural orbital population analysis charges, natural orbital electronic configuration, electron affinity, and ionization potential are obtained. Mulliken as well as natural orbital population analysis charges indicate that for all dimers, in cations most of the positive charge localized on the transition metal atom where in anions most of the negative charge localized on nitrogen atom. The binding energies for 3d‐metal mononitrides are higher than those for monocarbides and monoxides. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Transition metal complexes of 6‐mercaptopurine: Characterization,Theoretical calculation,DNA‐Binding,molecular docking,and anticancer activity

6‐mercaptopurine (6‐MP) is used for treating various cancers and autoimmune disorders. A few examples of transition metal complexes of 6‐MP have been shown to enhance its anticancer activity, but many remain untested. We isolated five highly stable and colored metal complexes of 6‐MP and confirmed their structures by elemental analysis, spectral, and thermal techniques. Infrared (IR) spectra revealed that 6‐MP is a bidentate ligand that interacts through sulfur and pyrimidine nitrogen in a 1:2 (M:L) molar ratio. The magnetic susceptibility and electron paramagnetic resonance (EPR) spectra for the Cu(II) complex revealed an octahedral arrangement around the metal ion with strong covalent bonding. The fully optimized geometries of the metal structures obtained using density function theory (DFT)/B3LYP calculations were used to verify the structural and biological features. DNA titration revealed that the octahedral Cu(II) complex has a critical binding constant value of K_b = 8 × 105. Docking studies using three different cancer protein receptors were used to predict the biological applications of the synthesized drug‐metal complexes. Finally, cytotoxicity assays against a myeloma cancer cell line (MM) and a colon cancer cell line (Caco‐2) revealed favorable anticancer activity for the copper complex, exceeding that of the gold‐standard chemotherapeutic cisplatin.