1H and 13C NMR assignments of eight nitrogen containing compounds from Nocardia alba sp.nov (YIM 30243T)

An unprecedented new natural product named nocarsin A (1), 5H‐4a,6,7a‐triazacyclopenta[cd]indene‐5,7(6H)‐dione (1), together with seven known compounds lumichrome (2), cyclo (L ‐Leu‐L ‐Tyr) (3), cyclo (L ‐Ala‐L ‐Ile) (4), cyclo (L ‐Ala‐L ‐Leu) (5), cyclo (L ‐Val‐L ‐Ala) (6), 5‐methyluracil (7) and uracil (8), was isolated from Nocardia alba sp.nov (YIM 30243^T), which was isolated from a soil sample collected from Yunnan Province, P. R. China. NMR techniques including COSY, HSQC, ROESY, and HMBC were used to elucidate the structures of these compounds. We report the unambiguous assignments of the ¹H and ¹³C NMR spectra of the new compound nocarsin A (1). Copyright © 2009 John Wiley & Sons, Ltd.     

Cyclopeptides and Amides from Pseudostellaria heterophylla (Caryophyllaceae)

From the roots of Pseudostellaria heterophylla, three cyclopeptides and three amides were isolated, besides heterophyllin A and B. Their structures were determined as cyclo (Ala‐Gly‐Pro‐Val‐Tyr‐) (heterophyllin J; 1 ), cyclo (Ala‐Gly‐Pro‐Tyr‐Leu‐) (pseudostellarin A; 2 ), cyclo (Gly‐Gly‐Gly‐Pro‐Pro‐Phe‐Gly‐Ile‐) (pseudostellarin B; 3 ), methyl γ‐hydroxypyroglutamate ( 4 ), methyl pyroglutamate ( 5 ), and pyroglutamic acid ( 6 ) on the basis of spectral data, especially 2D‐NMR data. Among them, compounds 1 and 4 are new compounds.     

Two New Cyclic Tetrapeptides of Streptomyces rutgersensis T009 Isolated from Elaphodus davidianus Excrement

Two new cyclic tetrapeptides, cyclo(l ‐Val‐l ‐Leu‐l ‐Val‐l ‐Ile) ( 1 ) and cyclo(l ‐Leu‐l ‐Leu‐l ‐Ala‐l ‐Ala) ( 2 ), and 15 known compounds, cyclo(Gly‐l ‐Leu‐Gly‐l ‐Leu) ( 3 ), cyclo(l ‐Ser‐l ‐Phe) ( 4 ), cyclo(l ‐Leu‐l ‐Ile) ( 5 ), cyclo(l ‐Tyr‐l ‐Phe) ( 6 ), cyclo(Gly‐l ‐Trp) ( 7 ), cyclo(l ‐Leu‐l ‐Tyr) ( 8 ), cyclo(Gly‐l ‐Phe) ( 9 ), cyclo(l ‐Phe‐trans‐4‐hydroxy‐l ‐Pro) ( 10 ), cyclo(l ‐Leu‐l ‐Leu) ( 11 ), cyclo(l ‐Val‐l ‐Phe) ( 12 ), cyclo(l ‐Val‐l ‐Leu) ( 13 ), cyclo(l ‐Ile‐l ‐Ile) ( 14 ), cyclo(l ‐Tyr‐l ‐Tyr) ( 15 ), turnagainolide A ( 16 ), and bacimethrin ( 17 ) were isolated from the fermentation broth of Streptomyces rutgersensis T009 obtained from Elaphodus davidianus excrement. Their structures were identified on the basis of spectroscopic analysis. Meanwhile, the absolute configurations of the amino acid residues of compounds 1 and 2 were determined by advanced Marfey method. Compound 3 was obtained from a natural source for the first time. The X‐ray single crystal diffraction data of bacimethrin ( 17 ) were also reported for the first time. Compounds 1  –  17 exhibited no antimicrobial activities with the MICs > 100 μg/ml.     

Studies on Synthesis of a Cycloheptapeptide and Effects of Different Metal Ions on the Cyclization

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Selective Inhibition of Collagen‐Induced Platelet Aggregation by a Cyclic Peptide from Drymaria diandra

Four cyclic peptides, diandrine A–D ( 1 – 4 ), were isolated from the MeOH extract of Formosan Drymaria diandra. Their structures were elucidated by chemical and spectroscopic analyses as cyclo(‐Gly¹‐Pro²‐Trp³‐Pro⁴‐Tyr⁵‐Phe⁶‐), cyclo(‐Gly¹‐Pro²‐Leu³‐Pro⁴‐Leu⁵‐Trp⁶‐Ser⁷‐Ser⁸‐), cyclo(Gly¹‐Gly²‐Pro³‐Tyr⁴‐Trp⁵‐Pro⁶‐), and cyclo(Gly¹‐Gly²‐Pro³‐Tyr⁴‐Trp⁵‐Pro⁶‐), respectively. Compounds 3 and 4 were stable conformational isomers. Cyclopeptide 1 showed a selective inhibitory effect on collagen‐induced platelet aggregation with an IC₅₀ value of 44.2 μM .     

A New Cyclopeptide from Clausena anisum‐olens

A new cyclopeptide, clausenain I ( 1 ), has been isolated by a multi‐step chromatography procedure from Clausena anisum‐olens. Its structure was elucidated as cyclo (‐Gly¹‐Ile²‐Ile³‐Val⁴‐Leu⁵‐Ile⁶‐Ile⁷‐Leu⁸‐Leu⁹‐) by extensive 2D‐NMR spectroscopic methods and chemical evidence. It is the first time that a natural cyclic peptide has been isolated from the genus Clausena.     

Two New Cyclopeptides from Arenaria oreophila (Caryophyllaceae)

Two new cyclopeptides, named arenariphilin A ( 1 ) and arenariphilin B ( 2 ), were isolated from the whole plants of Arenaria oreophila. Their structures were determined as cyclo‐(Thr‐Gly) ( 1 ) and cyclo‐(Ser₁‐Gly ‐Ser₂‐Ile ‐Phe₁‐Phe₂) ( 2 ) on the basis of spectral data, especially by 2D‐NMR.     

Huangqiyenins G – J,Four New 9,10‐Secocycloartane (=9,19‐Cyclo‐9,10‐secolanostane) Triterpenoidal Saponins from Astragalus membranaceus Bunge Leaves

Four new 9,10‐secocycloartane (=9,19‐cyclo‐9,10‐secolanostane) triterpenoidal saponins, named huangqiyenins G–J ( 1 – 4 , resp.), were isolated from Astragalus membranaceus Bunge leaves. The acid hydrolysis of 1 – 4 with 1M aqueous HCl yielded D ‐glucose, which was identified by GC analysis after treatment with L ‐cysteine methyl ester hydrochloride. The structures of 1 – 4 were established by detailed spectroscopic analysis as (3β,6α,10α,16β,24E)‐3,6‐bis(acetyloxy)‐10,16‐dihydroxy‐12‐oxo‐9,19‐cyclo‐9,10‐secolanosta‐9(11),24‐dien‐26‐yl β‐D ‐glucopyranoside ( 1 ), (3β,6a,10α,24E)‐3,6‐bis(acetyloxy)‐10‐hydroxy‐12,16‐dioxo‐9,19‐cyclo‐9,10‐secolanosta‐9(11),24‐dien‐26‐yl β‐D ‐glucopyranoside ( 2 ), (3β,6α,9α,10α,16β,24E)‐3,6‐bis(acetyloxy)‐9,10,16‐trihydroxy‐9,19‐cyclo‐9,10‐secolanosta‐11,24‐dien‐26‐yl β‐D ‐glucopyranoside ( 3 ), and (3β,6α,10α,24E)‐3,6‐bis(acetyloxy)‐10‐hydroxy‐16‐oxo‐9,19‐cyclo‐9,10‐secolanosta‐9(11),24‐dien‐26‐yl β‐D ‐glucopyranoside ( 4 ).     

An Inverted‐Sandwich Diuranium μ‐η5:η5‐Cyclo‐P5 Complex Supported by U‐P5 δ‐Bonding

Reaction of [U(Tren^TIPS)] [ 1 , Tren^TIPS=N(CH₂CH₂NSiiPr₃)₃] with 0.25 equivalents of P₄ reproducibly affords the unprecedented actinide inverted sandwich cyclo‐P₅ complex [{U(Tren^TIPS)}₂(μ‐η⁵:η⁵‐cyclo‐P₅)] ( 2 ). All prior examples of cyclo‐P₅ are stabilized by d‐block metals, so 2 shows that cyclo‐P₅ does not require d‐block ions to be prepared. Although cyclo‐P₅ is isolobal to cyclopentadienyl, which usually bonds to metals via σ‐ and π‐interactions with minimal δ‐bonding, theoretical calculations suggest the principal bonding in the U(P₅)U unit is polarized δ‐bonding. Surprisingly, the characterization data are overall consistent with charge transfer from uranium to the cyclo‐P₅ unit to give a cyclo‐P₅ charge state that approximates to a dianionic formulation. This is ascribed to the larger size and superior acceptor character of cyclo‐P₅ compared to cyclopentadienyl, the strongly reducing nature of uranium(III), and the availability of uranium δ‐symmetry 5f orbitals.     

Kinetics of the gas‐phase reactions of cyclo‐CF2CFXCHXCHX – (X = H,F, Cl) with OH radicals at 253–328 K

Rate constants were determined for the reactions of OH radicals with halogenated cyclobutanes cyclo‐CF₂CF₂CHFCH₂? (k₁), trans‐cyclo‐CF₂CF₂CHClCHF? (k₂), cyclo‐CF₂CFClCH₂CH₂? (k₃), trans‐cyclo‐CF₂CFClCHClCH₂? (k₄), and cis‐cyclo‐CF₂CFClCHClCH₂? (k₅) by using a relative rate method. OH radicals were prepared by photolysis of ozone at a UV wavelength (254 nm) in 200 Torr of a sample reference H₂O? O₃? O₂? He gas mixture in an 11.5‐dm³ temperature‐controlled reaction chamber. Rate constants of k₁ = (5.52 ± 1.32) × 10^?13 exp[–(1050 ± 70)/T], k₂ = (3.37 ± 0.88) × 10^?13 exp[–(850 ± 80)/T], k₃ = (9.54 ± 4.34) × 10^?13 exp[–(1000 ± 140)/T], k₄ = (5.47 ± 0.90) × 10^?13 exp[–(720 ± 50)/T], and k₅ = (5.21 ± 0.88) × 10^?13 exp[–(630 ± 50)/T] cm³ molecule^?1 s^?1 were obtained at 253–328 K. The errors reported are ± 2 standard deviations, and represent precision only. Potential systematic errors associated with uncertainties in the reference rate constants could add an additional 10%–15% uncertainty to the uncertainty of k₁–k₅. The reactivity trends of these OH radical reactions were analyzed by using a collision theory–based kinetic equation. The rate constants k₁–k₅ as well as those of related halogenated cyclobutane analogues were found to be strongly correlated with their C? H bond dissociation enthalpies. We consider the dominant tropospheric loss process for the halogenated cyclobutanes studied here to be by reaction with the OH radicals, and atmospheric lifetimes of 3.2, 2.5, 1.5, 0.9, and 0.7 years are calculated for cyclo‐CF₂CF₂CHFCH₂? , trans‐cyclo‐CF₂CF₂CHClCHF? , cyclo‐CF₂CFClCH₂CH₂? , trans‐cyclo‐CF₂CFClCHClCH₂? , and cis‐cyclo‐CF₂CFClCHClCH₂? , respectively, by scaling from the lifetime of CH₃CCl₃. © 2009 Wiley Periodicals, Inc. Int J Chem Kinet 41: 532–542, 2009     

Enantioselective Solid‐Phase Peptide Synthesis Using Traceless Chiral Coupling Reagents and Racemic Amino Acids

The enantioselective condensing reagent 4,6‐dimethoxy‐1,3,5‐triazine (DMT)/strychnine/BF$\rm{{_{4}^{-}}}$ was obtained by treatment of 2‐chloro‐4,6‐dimethoxy‐1,3,5‐triazine (CDMT) with strychnine tetrafluoroborate. The reagent was useful under typical conditions of solid‐phase peptide synthesis (SPPS) with enantiomerically homogeneous substrates. By SPPS, desired dipeptides were obtained in 84–94% yield using 4 equiv. of racemic Fmoc‐Ala, Fmoc‐Phe, and/or Fmoc‐Tyr for 1 equiv. of Wang resin loaded with Gly, Ala, Leu, Phe, Glu(^tBu), and/or Pro, respectively. For all three Fmoc‐protected amino acids, the configuration of the enantiomer preferred under SPPS conditions was independent of the structure of the acylated component and identical to that established in condensations proceeding in solution. In all cases, the enantiomer ratios L /D (er) were in a similar range, and varied from 9 : 92 to 2 : 98 for alanine, and from 90 : 10 to 100 : 0 for aromatic amino acids. The synthesis of Ac‐L ‐Lys(Ac)‐D ‐Ala‐D ‐Ala‐OH from racemic Fmoc‐Ala gave an L /D ratio of 10 : 90 for the esterification of Wang resin, and 0 : 100 for the formation of peptide bonds.     

Conjugated Polyelectrolyte‐Induced Self‐Assembly of Alkynylplatinum(II) 2,6‐Bis(benzimidazol‐2′‐yl)pyridine Complexes

Water‐soluble cationic alkynylplatinum(II) 2,6‐bis(benzimidazol‐2′‐yl)pyridine (bzimpy) complexes have been demonstrated to undergo supramolecular assembly with anionic polyelectrolytes in aqueous buffer solution. Metal–metal‐to‐ligand charge transfer (MMLCT) absorptions and triplet MMLCT (³MMLCT) emissions have been found in UV/Vis absorption and emission spectra of the electrostatic assembly of the complexes with non‐conjugated polyelectrolytes, driven by Pt???Pt and π–π interactions among the complex molecules. Interestingly, the two‐component ensemble formed by [Pt(bzimpy‐Et){C?CC₆H₄(CH₂NMe₃‐4)}]Cl₂ ( 1 ) with para‐linked conjugated polyelectrolyte (CPE), PPE‐SO₃^?, shows significantly different photophysical properties from that of the ensemble formed by 1 with meta‐linked CPE, mPPE‐Ala. The helical conformation of mPPE‐Ala allows the formation of strong mPPE‐Ala– 1 aggregates with Pt???Pt, electrostatic, and π–π interactions, as revealed by the large Stern–Volmer constant at low concentrations of 1 . Together with the reasonably large Förster radius, large HOMO–LUMO gap and high triplet state energy of mPPE‐Ala to minimize both photo‐induced charge transfer (PCT) and Dexter triplet energy back‐transfer (TEBT) quenching of the emission of 1 , efficient Förster resonance energy transfer (FRET) from mPPE‐Ala to aggregated 1 molecules and strong ³MMLCT emission have been found, while the less strong PPE‐SO₃^?– 1 aggregates and probably more efficient PCT and Dexter TEBT quenching would account for the lack of ³MMLCT emission in the PPE‐SO₃^?– 1 ensemble.     

Synthesis,structure characterization and catalytic activity of lanthanide complexes containing an ansa carbonous‐bridged cyclopentadienyl—thienyl ligand

A kind of new lanthanocene complex with an ansa carbonous‐bridged cyclopentadienyl/aromatic heterocycle ligand was prepared and characterized. Based on the data of elemental analyses, MS and IR, they were presumed to be solvent‐free complexes (cyclo‐C₄H₃SCMe₂C₅H₄)₂LnCl [Ln = Er (1), Dd ( 2 ), Y ( 3 ), Sm ( 4 )]. These complexes were effective for the polymerization of methyl methacrylate in the presence of co‐catalyst. When AlEt₃ and NaH (nanometric) were used as different co‐catalysts, the lanthanocene complexes 1–4 showed different catalytic behavior. These differences resulted from the formation of different active species. The catalyst system (cyclo‐C₄H₃SCMe₂C₅H₄)₂LnCl/NaH (nanometric) showed high catalytic activity (yield ≥ 95% and Mη > 10⁵) in a short time at the ambient temperature. Copyright © 2008 John Wiley & Sons, Ltd.     

Four pairs of proline-containing cyclic dipeptides from Nocardiopsis sp. HT88, an endophytic bacterium of Mallotus nudiflorus L

Abstract

Strain HT88 was isolated from the fresh stems of Mallotus nudiflorus L, and it was identified as Nocardiopsis sp. by analyzing its morphology and the 16S rRNA sequence. The extracts of fermented HT88 showed potent antimicrobial activities. Bioassay guided separation of extracts led to eight proline (or hydroxyproline, Hyp)-containing cyclic dipeptides. Their structures were determined by 1D and 2D NMR spectroscopy and ESI mass spectrometry and further comparison with existing ¹H and ¹³C NMR, melting points and specific rotation data. The eight 2,5-diketopiperazines (DKPs) were identified as cyclo(L-Pro-L-Leu) (1), cyclo(Pro-Leu) (2), cyclo(L-trans-Hyp-L-Leu) (3), cyclo(D-trans-Hyp-D-Leu) (4), and cyclo(D-Pro-L-Phe) (5), cyclo(L-Pro-L-Phe) (6), and cyclo(D-cis-Hyp-L-Phe) (7), cyclo(L-trans-Hyp-L-Phe) (8), respectively. Up to date, this is the first isolation of four pairs of proline based DKPs from Nocardiopsis sp.     

Mechanism of the Tyrosine Ammonia Lyase Reaction—Tandem Nucleophilic and Electrophilic Enhancement by a Proton Transfer

Quantum mechanics/molecular mechanics calculations in tyrosine ammonia lyase (TAL) ruled out the hypothetical Friedel–Crafts (FC) route for ammonia elimination from L ‐tyrosine due to the high energy of FC intermediates. The calculated pathway from the zwitterionic L ‐tyrosine‐binding state (0.0 kcal mol^?1) to the product‐binding state ((E)‐coumarate+H₂N? MIO; ?24.0 kcal mol^?1; MIO=3,5‐dihydro‐5‐methylidene‐4H‐imidazol‐4‐one) involves an intermediate (IS, ?19.9 kcal mol^?1), which has a covalent bond between the N atom of the substrate and MIO, as well as two transition states (TS1 and TS2). TS1 (14.4 kcal mol^?1) corresponds to a proton transfer from the substrate to the N1 atom of MIO by Tyr300? OH. Thus, a tandem nucleophilic activation of the substrate and electrophilic activation of MIO happens. TS2 (5.2 kcal mol^?1) indicates a concerted C? N bond breaking of the N‐MIO intermediate and deprotonation of the pro‐S β position by Tyr60. Calculations elucidate the role of enzymic bases (Tyr60 and Tyr300) and other catalytically relevant residues (Asn203, Arg303, and Asn333, Asn435), which are fully conserved in the amino acid sequences and in 3D structures of all known MIO‐containing ammonia lyases and 2,3‐aminomutases.     

Designed Beta‐Turn Mimic Based on the Allylic‐Strain Concept: Evaluation of Structural and Biological Features by Incorporation into a Cyclic RGD Peptide (Cyclo(‐L‐arginylglycyl‐L‐α‐aspartyl‐))

The (3R,5S,6E,8S,10R)‐11‐amino‐3,5,8,10‐tetramethylundec‐6‐enoic acid (ATUA; 1 ), which was designed as a βII′‐turn mimic according to the concepts of allylic strain and 2,4‐dimethylpentane units, was incorporated into a cyclic RGD peptide. The three‐dimensional structure of cyclo(‐RGD‐ATUA‐) (=cyclo(‐Arg‐Gly‐Asp‐ATUA‐)) 4 in H₂O was determined by NMR techniques, distance geometry calculations and molecular‐dynamics simulations. The RGD sequence of 4 shows high conformational flexibility but some preference for an extended conformation. The structural features of the RGD sequence of 4 were compared with the RGD moiety of cyclo(‐RGDfV‐) (=cyclo(‐Arg‐Gly‐Asp‐D ‐Phe‐Val‐)). In contrast to cyclo(‐RGDfV‐), which is a highly active αvβ3 antagonist and selective against αIIbβ3, cyclo(‐RGD‐ATUA‐) shows a lower activity and selectivity. The structure of the ATUA residue in the cyclic peptide resembles a βII′‐turn‐like conformation. Its middle part, adjacent to the C?C bond, strongly prefers the designed and desired structure.     

New and Bioactive Sesquiterpenes from Schisandra sphenanthera

Three new sesquiterpenes, schisansphenins A ( 1 ) and B ( 2 ) and (?)‐γ‐cuparenol ( 3 ), were isolated from an acetone extract of the fruits of Schisandra sphenanthera. The known compound 4 was isolated for the frist time from a natural source. The structures of the isolated compounds were elucidated through extensive spectroscopic analyses, particularly 2D‐NMR experiments (¹H,¹H‐COSY, HMQC, HMBC, and NOESY). A plausible biogenetic pathway for schisansphenin B ( 2 ) is proposed. Compounds 2 and 3 significantly reduced activation of NF‐AT and NF‐κB in the luciferase‐reporter assay.     

The Coordination of NiII and CuII Ions to the Polyhistidyl Motif of Hpn Protein: Is It as Strong as We Think?

Hpn, one of Helicobacter pylori′s nickel‐accessory proteins, is an amazingly peculiar protein: Almost half of its sequence consists of polyhistidyl (poly‐His) residues. Herein, we try to understand the origin of this naturally occurring sequence, thereby shedding some light on the bioinorganic chemistry of Hpn′s numerous poly‐His repeats. By using potentiometric, mass spectrometric, and various spectroscopic techniques, we studied the Ni^II‐ and Cu^II complexes of the wild‐type Ac‐THHHHYHGG‐NH₂ fragment of Hpn and of its six analogues, in which consecutive residues (His or Tyr) were replaced by Ala (Ala‐substitution or Ala‐scan approaches), thereby resulting in Ac‐TAHHHYHGG‐NH₂, Ac‐THAHHYHGG‐NH₂, Ac‐THHAHYHGG‐NH₂, Ac‐THHHAYHGG‐NH₂, Ac‐THHHHAHGG‐NH₂, and Ac‐THHHHYAGG‐NH₂ peptides. We found that the His4 residue is critical for both Ni^II‐ and Cu^II‐ion binding and the effectiveness of binding varies even if the substituted amino acid does not take part in the direct binding interactions.     

A New‐Skeleton Diterpenoid,New Prenylbisabolanes,and Their Putative Biogenetic Precursor,from the Red Seaweed Laurencia microcladia from Il Rogiolo: Assigning the Absolute Configuration when Two Chiral Halves are Connected By Single Bonds

We report here a new‐skeleton tricyclic diterpenoid, neorogioldiol ( 8 ), along with new prenylbisabolanes, rogioldiol D ( 6 ) and O¹¹,15‐cyclo‐14‐bromo‐14,15‐dihydrorogiol‐3,11‐diol ( 5 ), and their putative biogenetic precursor, (−)‐geranyllinalool ( 7 ), isolated from the red seaweed Laurencia microcladia, which has colonized a small tract of the Tuscany coast called Il Rogiolo. In a case study of the assignment of the absolute configuration for molecules composed of chiral halves that are connected by single bonds, the absolute configuration of neorogioldiol ( 8 ) was based on a) the assumption of the identity of the cyclohexane moiety with co‐occurring (2S,3R,6S)‐rogiolal ( 4 ) and b) NMR‐derived relative configurations for the bicyclic moiety, and c) the combination of these two pieces of information by molecular‐mechanics‐aided conformational analysis, in agreement with NOE data.     

Differentiation of Boc‐protected α,δ‐/δ,α‐ and β,δ‐/δ,β‐hybrid peptide positional isomers by electrospray ionization tandem mass spectrometry

Two new series of Boc‐N‐α,δ‐/δ,α‐ and β,δ‐/δ,β‐hybrid peptides containing repeats of L ‐Ala‐δ⁵‐Caa/δ⁵‐Caa‐L ‐Ala and β³‐Caa‐δ⁵‐Caa/δ⁵‐Caa‐β³‐Caa (L ‐Ala = L ‐alanine, Caa = C‐linked carbo amino acid derived from D ‐xylose) have been differentiated by both positive and negative ion electrospray ionization (ESI) ion trap tandem mass spectrometry (MS/MS). MSⁿ spectra of protonated isomeric peptides produce characteristic fragmentation involving the peptide backbone, the Boc‐group, and the side chain. The dipeptide positional isomers are differentiated by the collision‐induced dissociation (CID) of the protonated peptides. The loss of 2‐methylprop‐1‐ene is more pronounced for Boc‐NH‐L ‐Ala‐δ‐Caa‐OCH₃ (1), whereas it is totally absent for its positional isomer Boc‐NH‐δ‐Caa‐L ‐Ala‐OCH₃ (7), instead it shows significant loss of t‐butanol. On the other hand, second isomeric pair shows significant loss of t‐butanol and loss of acetone for Boc‐NH‐δ‐Caa‐β‐Caa‐OCH₃ (18), whereas these are insignificant for its positional isomer Boc‐NH‐β‐Caa‐δ‐Caa‐OCH₃ (13). The tetra‐ and hexapeptide positional isomers also show significant differences in MS² and MS³ CID spectra. It is observed that ‘b’ ions are abundant when oxazolone structures are formed through five‐membered cyclic transition state and cyclization process for larger ‘b’ ions led to its insignificant abundance. However, b₁⁺ ion is formed in case of δ,α‐dipeptide that may have a six‐membered substituted piperidone ion structure. Furthermore, ESI negative ion MS/MS has also been found to be useful for differentiating these isomeric peptide acids. Thus, the results of MS/MS of pairs of di‐, tetra‐, and hexapeptide positional isomers provide peptide sequencing information and distinguish the positional isomers. Copyright © 2010 John Wiley & Sons, Ltd.