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Mechanistic Study on the Monofunctional Binding of Hydrolysis Products of Non-planar Heterocyclic Complexes Trans-[PtCl_2NH_3(piperidine)] and Trans-[PtCl_2(piperidine)_2] to DNA Purine Bases
作者姓名:CHEN  Jun-Hui ZHOU  Li-Xin
作者单位:Department of Chemistry, Jinan University, Guangzhou, Cruangdong 510632, China
基金项目:This work was financially supported from the National Natural Science Foundation of China (No. 20971056)
摘    要:The monofunctional substitution reactions between trans-PtCl(H2O)(NH3)(pip)]+,trans-Pt(H2O)2(NH3)(pip)]2+,trans-PtCl(H2O)(pip)2]+,trans-Pt(H2O)2(pip)2]2+ (pip = piperidine) and adenine/guanine nucleotides are explored by using B3LYP hybrid functional and IEF-PCM salvation models. For the trans-Pt(H2O)2(NH3)(pip)]2+ and trans-PtCl(H2O)(NH3)(pip)]+ complexes,the computed barrier heights in aqueous solution are 13.5/13.5 and 11.6/11.6 kcal/mol from trans-Pt-chloroaqua complex to trans/cis-monoadduct for adenine and guanine,and the corresponding values are 20.7/20.7 and 18.8/18.8 kcal/mol from trans-Pt-diaqua complex to trans/cis-monoadduct for adenine and guanine,respectively. For trans-PtCl(H2O)(pip)2]+ and trans-Pt(H2O)2(pip)2]2+,the corresponding values are 21.5/21.3 and 19.4/19.4 kcal/mol,and 26.0/26.0 and 20.7/20.8 kal/mol for adenine and guanine,respectively. Our calculations demonstrate that the barrier heights of chloroaqua are lower than the corresponding values of diaqua for adenine and guanine. In addition,the free energies of activation for guanine in aqueous solution are all smaller than that for adenine,which predicts a preference of 1.9 kcal/mol when trans-PtCl(H2O)(NH3)(pip)]+ and trans-Pt(H2O)2(NH3)(pip)]2+ are the active agents and ~1.9 and ~ 5.3 kcal/mol when trans-PtCl(H2O)(pip)2]+ and trans-Pt(H2O)2(pip)2]2+ are the active agents,respectively. For the reaction of trans-Pt-chloroaqua (or diaqua) to cis-monoadduct,we obtain the same transition-state structure as from the reaction of trans-Pt-chloroaqua (or diaqua) to trans-monoadduct,which seems that the trans-Pt-chloroaqua (or diaqua) complex can generate trans-or cis-monoadduct via the same transition-state.

关 键 词:DNA结合  水解  嘌呤碱基  哌啶  鸟嘌呤核苷酸  非平面  电信公司  巴基斯坦

Mechanistic Study on the Monofunctional Binding of Hydrolysis Products of Non-planar Heterocyclic Complexes Trans-[PtCl2NH3(piperidine)] and Trans-[PtCl2(piperidine)2]to DNA Purine Bases
CHEN,Jun-Hui ZHOU,Li-Xin.Mechanistic Study on the Monofunctional Binding of Hydrolysis Products of Non-planar Heterocyclic Complexes Trans-[PtCl2NH3(piperidine)] and Trans-[PtCl2(piperidine)2]to DNA Purine Bases[J].Chinese Journal of Structural Chemistry,2010,29(10):1536-1546.
Authors:CHEN Jun-Hui  ZHOU Li-Xin
Abstract:The monofunctional substitution reactions between trans-PtCl(H2O)(NH3)(pip)]+,trans-Pt(H2O)2(NH3)(pip)]2+,trans-PtCl(H2O)(pip)2]+,trans-Pt(H2O)2(pip)2]2+(pip = piperidine)and adenine/guanine nucleotides are explored by using B3LYP hybrid functional and IEF-PCM salvation models.For the trans-Pt(H2O)2(NH3)(pip)]2+and trans-PtCl(H2O)(NH3)(pip)]+complexes,the computed barrier heights in aqueous solution are 13.5/13.5 and 11.6/11.6 kcal/mol from trans-Pt-chloroaqua complex to trans/cis-monoadduct for adenine and guanine,and the corresponding values are 20.7/20.7 and 18.8/18.8 kcal/mol from trans-Pt-diaqua complex to trans/cis-monoadduct for adenine and guanine,respectively.For trans-PtCl(H2O)(pip)2]+and trans-Pt(H2O)2(pip)2]2+,the corresponding values are 21.5/21.3 and 19.4/19.4 kcal/mol,and26.0/26.0 and 20.7/20.8 kal/mol for adenine and guanine,respectively.Our calculations demonstrate that the barrier heights of chloroaqua are lower than the corresponding values of diaqua for adenine and guanine.In addition,the free energies of activation for guanine in aqueous solution are all smaller than that for adenine,which predicts a preference of 1.9 kcal/mol when trans-PtCl(H2O)(NH3)(Pip)]+and trans-Pt(H2O)2(NH3)(pip)]2+are the active agents and~1.9 and~5.3 kcal/mol when trans-PtCl(H2O)(pip)2]+and trans-Pt(H2O)2(pip)2]2+are the active agents,respectively.For the reaction of trans-Pt-chloroaqua(or diaqua)to cis-monoadduct,we obtain the same transition-state structure as from the reaction of trans-Pt-chloroaqua(or diaqua)to trans-monoadduct,which seems that the trans-Pt-chioroaqua(or diaqua)complex can generate trans-or cis-monoadduct via the same transition-state.
Keywords:DFT  trans-[PtCl2NH3(piperidine)] and trans-[PtCl2(piperidine)2]  DNA bases  transition state  activation energy
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