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MM3 Modeling of Ribose and 2-Deoxyribose Ring Puckering
Authors:Michael K Dowd  Alfred D French  Peter J Reilly
Abstract:ABSTRACT

Conformational energy maps for furanosyl and pyranosyl rings of α- and β-ribose and 2-deoxyribose were generated with the molecular mechanics program MM3. For the furanosyl tautomers, low-energy Northern and Southern minima were found. For the pyranosyl rings, lowest-energy minima corresponded to chair forms. Hydrogen-hydrogen coupling constants for the minimal-energy conformers were calculated based on Karplus equations. Computational and experimental results indicate that several tautomeric forms of ribose and 2-deoxyribose exist in multiple conformations in solution. Ring conformations of related crystal structures have energies within ~2 kcal/mol of the calculated global minima.
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