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Comparison of modern Langevin integrators for simulations of coarse-grained polymer melts
Authors:J Finkelstein  G Fiorin  B Seibold
Institution:1. Department of Mathematics, Temple University, Philadelphia, PA, USAjoshua.finkelstein@temple.edu;3. Institute for Computational Molecular Science, Temple University, Philadelphia, PA, USA;4. National Heart, Lung and Blood Institute, Bethesda, MD, USA;5. Department of Mathematics, Temple University, Philadelphia, PA, USA
Abstract:For a wide range of phenomena, current computational ability does not always allow for atomistic simulations of high-dimensional molecular systems to reach time scales of interest. Coarse-graining (CG) is an established approach to alleviate the impact of computational limits while retaining the same algorithms used in atomistic simulations. It is important to understand how algorithms such as Langevin integrators perform on non-trivial CG molecular systems, and in particular how large of an integration time step can be used without introducing unacceptable amounts of error into averaged quantities of interest. To investigate this, we examined three different Langevin integrators on a CG polymer melt: the recently developed BAOAB method by Leimkuhler and Matthews J. Chem. Phys. 138 (17), 05B601_1 (2013)], the Grønbech-Jensen and Farago method Mol. Phys. 111 (8), 983-991 (2013)], or G-JF, and the frequently used Brünger–Brooks–Karplus integrator Chem. Phys. Lett. 105 (5), 495-500 (1984)], known as BBK. We compute and analyse key statistical properties for each. Our results indicate that the integrators perform similarly for a small friction parameter; however outside this regime, the use of large integration steps produces significant deviations from the predicted diffusivity and steady-state distributions for all methods examined with the exception of G-JF.
Keywords:Langevin integrator  coarse-grained  polymer melt  molecular dynamics
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