Determination of nitrogen‐15 isotope fractionation in tropine: evaluation of extraction protocols for isotope ratio measurement by isotope ratio mass spectrometry

N‐Demethylation of tropine is an important step in the degradation of this compound and related metabolites. With the purpose of understanding the reaction mechanism(s) involved, it is desirable to measure the ¹⁵N kinetic isotope effects (KIEs), which can be accessed through the ¹⁵N isotope shift (Δδ¹⁵N) during the reaction. To measure the isotope fractionation in ¹⁵N during tropine degradation necessitates the extraction of the residual substrate from dilute aqueous solution without introducing artefactual isotope fractionation. Three protocols have been compared for the extraction and measurement of the ¹⁵N/¹⁴N ratio of tropine from aqueous medium, involving liquid‐liquid phase partitioning or silica‐C18 solid‐phase extraction. Quantification was by gas chromatography (GC) on the recovered organic phase and δ¹⁵N values were obtained by isotope ratio measurement mass spectrometry (irm‐MS). Although all the protocols used can provide satisfactory data and both irm‐EA‐MS and irm‐GC‐MS can be used to obtain the δ¹⁵N values, the most convenient method is liquid‐liquid extraction from a reduced aqueous volume combined with irm‐GC‐MS. The protocols are applied to the measurement of ¹⁵N isotope shifts during growth of a Pseudomonas strain that uses tropane alkaloids as sole source of carbon and nitrogen. The accuracy of the determination of the ¹⁵N/¹⁴N ratio is sufficient to be used for the determination of ¹⁵N‐KIEs. Copyright © 2009 John Wiley & Sons, Ltd.