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Acceleration of a QM/MM‐QMC simulation using GPU
Authors:Yutaka Uejima  Tomoharu Terashima  Ryo Maezono
Institution:School of Information Science, Japan Advanced Institute of Science and Technology, Asahidai 1‐1, Nomi, Ishikawa 923‐1292, Japan
Abstract:We accelerated an ab initio molecular QMC calculation by using GPGPU. Only the bottle‐neck part of the calculation is replaced by CUDA subroutine and performed on GPU. The performance on a (single core CPU + GPU) is compared with that on a (single core CPU with double precision), getting 23.6 (11.0) times faster calculations in single (double) precision treatments on GPU. The energy deviation caused by the single precision treatment was found to be within the accuracy required in the calculation, ~10?5 hartree. The accelerated computational nodes mounting GPU are combined to form a hybrid MPI cluster on which we confirmed the performance linearly scales to the number of nodes. © 2011 Wiley Periodicals, Inc. J Comput Chem, 2011
Keywords:GPGPU  quantum Monte Carlo  electronic structure  FMO  CUDA  MPI  QM/MM
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