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Non‐enzymatic Ribonucleotide Reduction in the Prebiotic Context
Authors:Ivan Dragičević  Dr. Danijela Barić  Dr. Borislav Kovačević  Prof. Bernard T. Golding  Dr. David M. Smith
Affiliation:1. Division of Organic Chemistry and Biochemistry, Ru?er Bo?kovi? Institute, Bijeni?ka 54, 10000 Zagreb (Croatia);2. Department of Chemistry, Faculty of Science and Education, University of Mostar, Matice hrvatske bb, 88000 Mostar (Bosnia and Herzegovina);3. School of Chemistry, Newcastle University, Newcastle upon Tyne, NE1 7RU (UK)
Abstract:Model studies of prebiotic chemistry have revealed compelling routes for the formation of the building blocks of proteins and RNA, but not DNA. Today, deoxynucleotides required for the construction of DNA are produced by reduction of nucleotides catalysed by ribonucleotide reductases, which are radical enzymes. This study considers potential non‐enzymatic routes via intermediate radicals for the ancient formation of deoxynucleotides. In this context, several mechanisms for ribonucleotide reduction, in a putative H2S/HS. environment, are characterized using computational chemistry. A bio‐inspired mechanistic cycle involving a keto intermediate and HSSH production is found to be potentially viable. An alternative pathway, proceeding through an enol intermediate is found to exhibit similar energetic requirements. Non‐cyclical pathways, in which HSS. is generated in the final step instead of HS., show a markedly increased thermodynamic driving force (ca. 70 kJ mol?1) and thus warrant serious consideration in the context of the prebiotic ribonucleotide reduction.
Keywords:computational chemistry  DNA  molecular evolution  prebiotic chemistry  radical reactions
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