Electron-density-dependent fused-sphere surfaces derived from pseudopotential calculations |
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Authors: | Gustavo A. Arteca Naomi D. Grant |
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Affiliation: | (1) Département de Chimie et Biochimie Laurentian University, Ramsey Lake Road, Sudbury, ON, Canada, P3E 2C6;(2) Department of Biology, Laurentian University, Ramsey Lake Road, Sudbury, ON, Canada, P3E 2C6 |
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Abstract: | Fused-sphere surfaces can be used to mimic a molecular boundary associated with a constant value of the electron density. The simplest of such fused-sphere models are constructed by using the atomic radii for the spherical isodensity surfaces of individual atoms. In this work, we discuss the extension of this model to molecules containing atoms beyond the second row. In these many- electron systems, the computation of electron densities is usually simplified by adopting a pseudopotential (or effective-core potential) approach. Here, we discuss the performance of large- and small-core pseudo-potential calculations as a tool to derive atomic radii. Our results provide an optimum set of variable radii that can be used to build fused-sphere surfaces. This continuum of surfaces provides a simple approximation to the low-electron-density regions around molecules with heavy atoms. |
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Keywords: | atomic radii isodensity contour surface LANL2DZ basis set molecular shape molecular surface |
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