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Electron-density-dependent fused-sphere surfaces derived from pseudopotential calculations
Authors:Gustavo A Arteca  Naomi D Grant
Institution:(1) Département de Chimie et Biochimie Laurentian University, Ramsey Lake Road, Sudbury, ON, Canada, P3E 2C6;(2) Department of Biology, Laurentian University, Ramsey Lake Road, Sudbury, ON, Canada, P3E 2C6
Abstract:Fused-sphere surfaces can be used to mimic a molecular lsquoboundaryrsquo associated with a constant value of the electron density. The simplest of such fused-sphere models are constructed by using the atomic radii for the spherical isodensity surfaces of individual atoms. In this work, we discuss the extension of this model to molecules containing atoms beyond the second row. In these many- electron systems, the computation of electron densities is usually simplified by adopting a pseudopotential (or effective-core potential) approach. Here, we discuss the performance of large- and small-core pseudo-potential calculations as a tool to derive atomic radii. Our results provide an optimum set of variable radii that can be used to build fused-sphere surfaces. This continuum of surfaces provides a simple approximation to the low-electron-density regions around molecules with heavy atoms.
Keywords:atomic radii  isodensity contour surface  LANL2DZ basis set  molecular shape  molecular surface
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