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Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation
Authors:Roland Somogyi  Carol Ann Sniegoski
Abstract:Molecular genetics presents an increasingly complex picture of the genome and biological function. Evidence is mounting for distributed function, redundancy, and combinatorial coding in the regulation of genes. Satisfactory explanation will require the concept of a parallel processing signaling network. Here we provide an introduction to Boolean networks and their relevance to present-day experimental research. Boolean network models exhibit global complex behavior, self-organization, stability, redundancy and periodicity, properties that deeply characterize biological systems. While the life sciences must inevitably face the issue of complexity, we may well look to cybernetics for a modeling language such as Boolean networks which can manageably describe parallel processing biological systems and provide a framework for the growing accumulation of data. We finally discuss experimental strategies and database systems that will enable mapping of genetic networks. The synthesis of these approaches holds an immense potential for new discoveries on the intimate nature of genetic networks, bringing us closer to an understanding of complex molecular physiological processes like brain development, and intractable medical problems of immediate importance, such as neurodegenerative disorders, cancer, and a variety of genetic diseases.
Keywords:Boolean networks  attractors  genetic networks  gene expression  molecular signaling  development  molecular evolution  biological rhythms
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