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Development of models for prediction of the antioxidant activity of derivatives of natural compounds
Authors:Rok Martinčič  Igor Kuzmanovski  Alain Wagner  Marjana Novič
Affiliation:1. National Institute of Chemistry, Hajdrihova 19, 1001 Ljubljana, Slovenia;2. Institute of Chemistry, Ss. Cyril and Methodius University in Skopje, Arhimedova 5, 1000 Skopje, Macedonia;3. Laboratory of Functional Chemical Systems, Faculty of Pharmacy, 74 Route du Rhin, 67401 Illkirch-Graffenstaden, France
Abstract:
Antioxidants are important for maintaining the appropriate balance between oxidizing and reducing species in the body and thus preventing oxidative stress. Many natural compounds are being screened for their possible antioxidant activity. It was found that a mushroom pigment Norbadione A, which is a pulvinic acid derivative, shows an antioxidant activity; the same was found for other pulvinic acid derivatives and structurally related coumarines. Based on the results of in vitro studies performed on these compounds as a part of this study quantitative structure–activity relationship (QSAR) predictive models were constructed using multiple linear regression, counter-propagation artificial neural networks and support vector regression (SVR). The models have been developed in accordance with current QSAR guidelines, including the assessment of the models applicability domains. A new approach for the graphical evaluation of the applicability domain for SVR models is suggested. The developed models show sufficient predictive abilities for the screening of virtual libraries for new potential antioxidants.
Keywords:AD, applicability domain   CP-ANN, counter-propagation artificial neural network   ED, Euclidean distance   GA, genetic algorithm   MD, Mahalanobis distance   MEDS, minimum Euclidean distance space   QSAR, quantitative structure&ndash  activity relationship   RMSE, root mean square error   ROS, reactive oxygen species   SOM, self-organizing map   SVM, support vector machine   SVR, support vector regression
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